IVF0026483 (gene) Melon (IVF77) v1

Overview
NameIVF0026483
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr09: 12855341 .. 12855547 (-)
RNA-Seq ExpressionIVF0026483
SyntenyIVF0026483
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGATGAAAGTGCAAGTGAATTTAACTATGCTATTGGGAATTGCAATGCATGCTAAAGAGCTTGAAAATTTCATCTTTGACATGGAACAGTACATTAATGCCAGTGGAACCAACTCTGAAGAAGCTAAGGTGACACTAGCCTCCAGGCATTTGTCTGATGATGCAAAACTCTGGTGGAGGTCGAAAGTGAACAACGTATAA

mRNA sequence

ATGGCCGAGATGAAAGTGCAAGTGAATTTAACTATGCTATTGGGAATTGCAATGCATGCTAAAGAGCTTGAAAATTTCATCTTTGACATGGAACAGTACATTAATGCCAGTGGAACCAACTCTGAAGAAGCTAAGGTGACACTAGCCTCCAGGCATTTGTCTGATGATGCAAAACTCTGGTGGAGGTCGAAAGTGAACAACGTATAA

Coding sequence (CDS)

ATGGCCGAGATGAAAGTGCAAGTGAATTTAACTATGCTATTGGGAATTGCAATGCATGCTAAAGAGCTTGAAAATTTCATCTTTGACATGGAACAGTACATTAATGCCAGTGGAACCAACTCTGAAGAAGCTAAGGTGACACTAGCCTCCAGGCATTTGTCTGATGATGCAAAACTCTGGTGGAGGTCGAAAGTGAACAACGTATAA

Protein sequence

MAEMKVQVNLTMLLGIAMHAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV
Homology
[Close]
BLAST of IVF0026483 vs. ExPASy TrEMBL
Match: A0A5D3DTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002600 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MAEMKVQVNLTMLLGIAMHAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLW 60
          MAEMKVQVNLTMLLGIAMHAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLW
Sbjct: 23 MAEMKVQVNLTMLLGIAMHAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLW 82

Query: 61 WRSKVNNV 69
          WRSKVNNV
Sbjct: 83 WRSKVNNV 90

[Close]
BLAST of IVF0026483 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 20   AKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 69
            AKELE FI +MEQY  ASGTNSEE KVTLAS HLSDDAKLWWRSKVN++
Sbjct: 1157 AKELEIFILNMEQYFKASGTNSEETKVTLASMHLSDDAKLWWRSKVNDI 1205

[Close]
BLAST of IVF0026483 vs. ExPASy TrEMBL
Match: A0A5D3D6V5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00130 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 20 AKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 69
          AKELE FI +MEQY  ASGTNSEE KVTLAS HLSDDAKLWWRSKVN++
Sbjct: 43 AKELEIFILNMEQYFKASGTNSEETKVTLASMHLSDDAKLWWRSKVNDI 91

[Close]
BLAST of IVF0026483 vs. ExPASy TrEMBL
Match: A0A5A7URV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00730 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 20 AKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 69
          AKE ENFIFDMEQY  ASGTN E+ KVTLA  HLSDDAKLWWRS+VN++
Sbjct: 39 AKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDI 87

[Close]
BLAST of IVF0026483 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.1e-13
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 20  AKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 69
           AK+LENF+FD+EQY  A+GT SEE KVTLA+ HL+DDAKLWWRSKVN++
Sbjct: 173 AKDLENFLFDVEQYFKATGTTSEEMKVTLATMHLTDDAKLWWRSKVNDI 221

[Close]
BLAST of IVF0026483 vs. NCBI nr
Match: KAA0062358.1 (uncharacterized protein E6C27_scaffold154G001250 [Cucumis melo var. makuwa] >TYK26620.1 uncharacterized protein E5676_scaffold313G002600 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (339), Expect = 1.69e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MAEMKVQVNLTMLLGIAMHAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLW 60
          MAEMKVQVNLTMLLGIAMHAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLW
Sbjct: 23 MAEMKVQVNLTMLLGIAMHAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLW 82

Query: 61 WRSKVNNV 68
          WRSKVNNV
Sbjct: 83 WRSKVNNV 90

[Close]
BLAST of IVF0026483 vs. NCBI nr
Match: WP_217833205.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 87.0 bits (214), Expect = 1.41e-19
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 0 

Query: 20  AKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 68
           AK+LENFIFDM+QY  ASGT SEE KVTLAS HLSDDAKLWWRSKVN+V
Sbjct: 70  AKKLENFIFDMDQYFKASGTVSEEVKVTLASMHLSDDAKLWWRSKVNDV 118

[Close]
BLAST of IVF0026483 vs. NCBI nr
Match: KAA0056239.1 (uncharacterized protein E6C27_scaffold226G00030 [Cucumis melo var. makuwa] >TYK05259.1 uncharacterized protein E5676_scaffold108G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 5.04e-19
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 20 AKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 68
          AKE ENFIFDMEQY  ASGTN E+ KVTLA  HLSDDAKLWWRS+VN++
Sbjct: 39 AKEFENFIFDMEQYFKASGTNYEKTKVTLAFMHLSDDAKLWWRSRVNDI 87

[Close]
BLAST of IVF0026483 vs. NCBI nr
Match: KAA0051577.1 (uncharacterized protein E6C27_scaffold174G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 5.03e-18
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0 

Query: 19  HAKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 68
           + KELENFIFD +QY  ASGTNS+E KVTLA  HLSDDAKLWWRSKVN+ 
Sbjct: 107 NVKELENFIFDTKQYFKASGTNSKETKVTLAYMHLSDDAKLWWRSKVNDT 156

[Close]
BLAST of IVF0026483 vs. NCBI nr
Match: TYK19296.1 (uncharacterized protein E5676_scaffold295G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 8.54e-18
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0 

Query: 20 AKELENFIFDMEQYINASGTNSEEAKVTLASRHLSDDAKLWWRSKVNNV 68
          AKELE FI +MEQY  ASGTNSEE KVTLAS HLSDDAKLWWRSKVN++
Sbjct: 43 AKELEIFILNMEQYFKASGTNSEETKVTLASMHLSDDAKLWWRSKVNDI 91

The following BLAST results are available for this feature:
BLAST of IVF0026483 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0026483 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DTL14.6e-29100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UYE81.6e-1381.63Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015... [more]
A0A5D3D6V51.6e-1381.63Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7URV83.6e-1377.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1D9066.1e-1373.47Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1[more]
BLAST of IVF0026483 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062358.11.69e-39100.00uncharacterized protein E6C27_scaffold154G001250 [Cucumis melo var. makuwa] >TYK... [more]
WP_217833205.11.41e-1983.67retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
KAA0056239.15.04e-1977.55uncharacterized protein E6C27_scaffold226G00030 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0051577.15.03e-1876.00uncharacterized protein E6C27_scaffold174G001170 [Cucumis melo var. makuwa][more]
TYK19296.18.54e-1881.63uncharacterized protein E5676_scaffold295G00130 [Cucumis melo var. makuwa][more]
BLAST of IVF0026483 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026483.1IVF0026483.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity