IVF0026448 (gene) Melon (IVF77) v1

Overview


Name	IVF0026448
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	NBS-LRR type resistance protein
Location	chr01: 25241336 .. 25241611 (-)
RNA-Seq Expression	IVF0026448
Synteny	IVF0026448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGACTGAGCTCGAGGACTTTCGGTGCTCGTCCCAAGAAAACGCGAGCGAGACTGCCCCAGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACTATTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGA

mRNA sequence

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGACTGAGCTCGAGGACTTTCGGTGCTCGTCCCAAGAAAACGCGAGCGAGACTGCCCCAGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACTATTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGA

Coding sequence (CDS)

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGACTGAGCTCGAGGACTTTCGGTGCTCGTCCCAAGAAAACGCGAGCGAGACTGCCCCAGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACTATTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGA

Protein sequence

MANASNEWRTLVWCQKPLEMHLQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPDYFFPLLRIGHKSFDLRGSCSEDFNPHSWHAP

Homology

[Close]

BLAST of IVF0026448 vs. ExPASy TrEMBL
Match: A0A5A7UVV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00020 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.9e-34
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPD 60
          MANASNEW+TLV CQKPLEM+LQRRK+TEL+DF CSSQENAS+ APDS FSSWGKKRSP 
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 YFFPLLRIGHKSFDLRGSCSEDFNPHSWHA 91
           FF LLRIGHKSFDL+GS  EDFN HSWH+
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWHS 90

[Close]

BLAST of IVF0026448 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.2e-29
Identity = 65/72 (90.28%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPD 60
           MANASNEWR LV CQKPLEMHLQRRKR ELEDFRCSSQEN SE APDS FSSWGKKRSPD
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  YFFPLLRIGHKS 73
            FFPLLRIGHKS
Sbjct: 225 GFFPLLRIGHKS 236

[Close]

BLAST of IVF0026448 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.9e-26
Identity = 68/102 (66.67%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKRTELED---------------FRCSSQENASETA 60
           + NAS EWRTLV CQKPL+MHLQ+RK  ELED               FRCSS ENASE A
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENA 343

Query: 61  PDSVFSSWGKKRSPDYFFPLLRIGHKSFDLRGSCSEDFNPHS 88
            DSVFSS G+K+  D FFPLLRIGH+SFDLRGS SEDFNPHS
Sbjct: 344 LDSVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPHS 385

[Close]

BLAST of IVF0026448 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-24
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 22   LQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPDYFFPLLRIGHKSFDLRGSCSE 81
            ++RR R +L+DFRCSSQENASE   DSVFSSW KK +PD FFPLLRIGHKSFDLRGS SE
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   DFNPHSWHAP 92
            DFNPHSWHAP
Sbjct: 1077 DFNPHSWHAP 1086

[Close]

BLAST of IVF0026448 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPD 60
          M +ASNEWRTLV CQKPLEMHLQ+RKR ELEDF   SQEN SE A + VFSSWGKK SP+
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 YFFPLLRIGHKSFDL 76
           FFPL RIGHKSFDL
Sbjct: 61 GFFPLFRIGHKSFDL 75

[Close]

BLAST of IVF0026448 vs. NCBI nr
Match: KAA0057641.1 (hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 6.92e-41
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPD 60
          MANASNEW+TLV CQKPLEM+LQRRK+TEL+DF CSSQENAS+ APDS FSSWGKKRSP 
Sbjct: 1  MANASNEWQTLVRCQKPLEMYLQRRKQTELKDFWCSSQENASDNAPDSAFSSWGKKRSPY 60

Query: 61 YFFPLLRIGHKSFDLRGSCSEDFNPHSWHA 90
           FF LLRIGHKSFDL+GS  EDFN HSWH+
Sbjct: 61 GFFHLLRIGHKSFDLQGSYYEDFNRHSWHS 90

[Close]

BLAST of IVF0026448 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 7.26e-35
Identity = 65/72 (90.28%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPD 60
           MANASNEWR LV CQKPLEMHLQRRKR ELEDFRCSSQEN SE APDS FSSWGKKRSPD
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  YFFPLLRIGHKS 72
            FFPLLRIGHKS
Sbjct: 225 GFFPLLRIGHKS 236

[Close]

BLAST of IVF0026448 vs. NCBI nr
Match: KAA0040927.1 (hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK10610.1 hypothetical protein E5676_scaffold315G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.42e-32
Identity = 68/102 (66.67%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MANASNEWRTLVWCQKPLEMHLQRRKRTELEDF---------------RCSSQENASETA 60
           + NAS EWRTLV CQKPL+MHLQ+RK  ELEDF               RCSS ENASE A
Sbjct: 284 LGNASKEWRTLVRCQKPLKMHLQQRKWAELEDFWCSSQQRKRVELDVFRCSSLENASENA 343

Query: 61  PDSVFSSWGKKRSPDYFFPLLRIGHKSFDLRGSCSEDFNPHS 87
            DSVFSS G+K+  D FFPLLRIGH+SFDLRGS SEDFNPHS
Sbjct: 344 LDSVFSSCGEKQFFDDFFPLLRIGHQSFDLRGSYSEDFNPHS 385

[Close]

BLAST of IVF0026448 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 1.11e-29
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MANASNEWRTLVWCQKPLEMHLQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPD 60
          M +ASNEWRTLV CQKPLEMHLQ+RKR ELEDF   SQEN SE A + VFSSWGKK SP+
Sbjct: 1  MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61 YFFPLLRIGHKSFDL 75
           FFPL RIGHKSFDL
Sbjct: 61 GFFPLFRIGHKSFDL 75

[Close]

BLAST of IVF0026448 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 2.96e-29
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 22   LQRRKRTELEDFRCSSQENASETAPDSVFSSWGKKRSPDYFFPLLRIGHKSFDLRGSCSE 81
            ++RR R +L+DFRCSSQENASE   DSVFSSW KK +PD FFPLLRIGHKSFDLRGS SE
Sbjct: 1017 VERRNRADLKDFRCSSQENASENDSDSVFSSWCKKWTPDGFFPLLRIGHKSFDLRGSYSE 1076

Query: 82   DFNPHSWHAP 91
            DFNPHSWHAP
Sbjct: 1077 DFNPHSWHAP 1086

The following BLAST results are available for this feature:

BLAST of IVF0026448 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026448 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVV0	2.9e-34	81.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFP2	6.2e-29	90.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CGX3	2.9e-26	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V5J2	2.7e-24	80.00	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3E5W4	1.3e-23	77.33	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of IVF0026448 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057641.1	6.92e-41	81.11	hypothetical protein E6C27_scaffold43054G00020 [Cucumis melo var. makuwa]	[more]
TYK22521.1	7.26e-35	90.28	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0040927.1	1.42e-32	66.67	hypothetical protein E6C27_scaffold125G00720 [Cucumis melo var. makuwa] >TYK1061...	[more]
KAA0035524.1	1.11e-29	77.33	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
KAA0062888.1	2.96e-29	80.00	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]

BLAST of IVF0026448 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026448.1	IVF0026448.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003964	RNA-directed DNA polymerase activity