IVF0026409 (gene) Melon (IVF77) v1

Overview


Name	IVF0026409
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr04: 21886397 .. 21886798 (-)
RNA-Seq Expression	IVF0026409
Synteny	IVF0026409

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCAAAGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTAGCAGCAAAAGAAACGGGTTGAGCTCGAGGACTTCTAGTGTTCATCCCAAGAAAACGCAAACGAGAATGCCCCGAACTCAGTTTTCTTGTCTTGGTGCCAAAAGCGGTACTTCGACGATTTCTTCCCTTTGCTTTGTATTAGTCATAAGTCTCTCCATCTTTGAGGCTCGTACTCCGAGGAGTTCAACCCACACTCCTGGCATGCTCCCTAACACATTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAATTGTGGTGCGATCCAAAACGATACAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGA

mRNA sequence

ATGCTTCCAAAGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTAGCAGCAAAAGAAACGGGTTGAGCTCGAGGACTTCTAGTGTTCATCCCAAGAAAACGCAAACGAGAATGCCCCGAACTCAGTTTTCTTGTCTTGGTGCCAAAAGCGGTACTTCGACGATTTCTTCCCTTTGCTTTGTATTAGTCATAAGTCTCTCCATCTTTGAGGCTCGTACTCCGAGGAGTTCAACCCACACTCCTGGCATGCTCCCTAACACATTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAATTGTGGTGCGATCCAAAACGATACAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGA

Coding sequence (CDS)

ATGCTTCCAAAGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTGGAAATGCACTAGCAGCAAAAGAAACGGGTTGAGCTCGAGGACTTCTAGTGTTCATCCCAAGAAAACGCAAACGAGAATGCCCCGAACTCAGTTTTCTTGTCTTGGTGCCAAAAGCGGTACTTCGACGATTTCTTCCCTTTGCTTTGTATTAGTCATAAGTCTCTCCATCTTTGAGGCTCGTACTCCGAGGAGTTCAACCCACACTCCTGGCATGCTCCCTAACACATTTTCCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAATTGTGGTGCGATCCAAAACGATACAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGA

Protein sequence

MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPMLPTSGERSSGVRNH

Homology

[Close]

BLAST of IVF0026409 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.9e-51
Identity = 103/133 (77.44%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1    MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTIS 60
            M P +GERSSGVRNHWKCT S+ NGL+SRTS   PKKT+ RMPR+QFS  GAKS T T+S
Sbjct: 1497 MFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVS 1556

Query: 61   SLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPML 120
            SLCFVLVI+LSIFEARTPR+STHT GMLP+ FS+GIG+EASSLEGELWC+PKR KRW ML
Sbjct: 1557 SLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEASSLEGELWCNPKRSKRWTML 1616

Query: 121  PTSGERSSGVRNH 134
            PTS ERSSG+RNH
Sbjct: 1617 PTSVERSSGIRNH 1629

[Close]

BLAST of IVF0026409 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.9e-40
Identity = 101/187 (54.01%), Postives = 109/187 (58.29%), Query Frame = 0


Query: 1   MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTIS 60
           MLP SGERSSGVRN WKCT  + NGLSSRTS   PKKT+ RMP+TQFS  G KS   T+S
Sbjct: 257 MLPTSGERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVS 316

Query: 61  SLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQ-------------------------- 120
           +LC VLV SLSIF A TPR+STHTPGMLP+TFS+                          
Sbjct: 317 TLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRI 376

Query: 121 ----------------------------GIGREASSLEGELWCDPKRYKRWPMLPTSGER 134
                                       GIGREASSLEGEL CDPK  KRWPMLPT GER
Sbjct: 377 GHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGER 436

[Close]

BLAST of IVF0026409 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 88/133 (66.17%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTIS 60
           MLP SGERSSGVRNHWKCT S+ N LSSRT    PKKT  R P+ QFS  G KSG  T+S
Sbjct: 615 MLPTSGERSSGVRNHWKCTCSEGNMLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVS 674

Query: 61  SLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPML 120
           SL  + +I L +F A  P +STHTP ML +T S GIGREASSLE ELWCDPKR K W ML
Sbjct: 675 SL-LLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLML 734

Query: 121 PTSGERSSGVRNH 134
            TSG RSS VRNH
Sbjct: 735 QTSGGRSSDVRNH 746

[Close]

BLAST of IVF0026409 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.9e-27
Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 42  MPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREAS 101
           MPRTQFS   AK           VLVISLSIFEART R+STHT GMLP+ F+QGIGREAS
Sbjct: 1   MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 102 SLEGELWCDPKRYKRWPMLPTSGERSSGVRNH 134
           SLEGELW DPKR+KRWPML TSGER SGVRNH
Sbjct: 61  SLEGELWFDPKRFKRWPMLATSGERLSGVRNH 92

[Close]

BLAST of IVF0026409 vs. ExPASy TrEMBL
Match: A0A5D3CQ36 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00910 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.8e-27
Identity = 69/95 (72.63%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 1  MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTIS 60
          MLP SGER   VRNHWKC  S+ NGLSSRTS   PKKT+ RMP TQFS  G KS   T+S
Sbjct: 1  MLPTSGERLFDVRNHWKCACSEGNGLSSRTSGARPKKTRARMPLTQFSRPGVKSDPPTVS 60

Query: 61 SLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQG 96
          SLCFVL ISLSIFEA T R+STHTPGMLP+TFSQG
Sbjct: 61 SLCFVLAISLSIFEACTLRTSTHTPGMLPDTFSQG 95

[Close]

BLAST of IVF0026409 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (535), Expect = 4.77e-60
Identity = 103/133 (77.44%), Postives = 116/133 (87.22%), Query Frame = 0


Query: 1    MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTIS 60
            M P +GERSSGVRNHWKCT S+ NGL+SRTS   PKKT+ RMPR+QFS  GAKS T T+S
Sbjct: 1497 MFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAKSDTPTVS 1556

Query: 61   SLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPML 120
            SLCFVLVI+LSIFEARTPR+STHT GMLP+ FS+GIG+EASSLEGELWC+PKR KRW ML
Sbjct: 1557 SLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEASSLEGELWCNPKRSKRWTML 1616

Query: 121  PTSGERSSGVRNH 133
            PTS ERSSG+RNH
Sbjct: 1617 PTSVERSSGIRNH 1629

[Close]

BLAST of IVF0026409 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 173 bits (439), Expect = 5.44e-48
Identity = 101/187 (54.01%), Postives = 109/187 (58.29%), Query Frame = 0


Query: 1   MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTIS 60
           MLP SGERSSGVRN WKCT  + NGLSSRTS   PKKT+ RMP+TQFS  G KS   T+S
Sbjct: 257 MLPTSGERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPKSDPPTVS 316

Query: 61  SLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQ-------------------------- 120
           +LC VLV SLSIF A TPR+STHTPGMLP+TFS+                          
Sbjct: 317 TLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLSFLVLGKLWSPDGFFPLLRI 376

Query: 121 ----------------------------GIGREASSLEGELWCDPKRYKRWPMLPTSGER 133
                                       GIGREASSLEGEL CDPK  KRWPMLPT GER
Sbjct: 377 GHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGER 436

[Close]

BLAST of IVF0026409 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 7.09e-43
Identity = 88/133 (66.17%), Postives = 96/133 (72.18%), Query Frame = 0


Query: 1   MLPKSGERSSGVRNHWKCTSSKRNGLSSRTSSVHPKKTQTRMPRTQFSCLGAKSGTSTIS 60
           MLP SGERSSGVRNHWKCT S+ N LSSRT    PKKT  R P+ QFS  G KSG  T+S
Sbjct: 615 MLPTSGERSSGVRNHWKCTCSEGNMLSSRTFGNLPKKTGARKPQIQFSHAGVKSGHPTVS 674

Query: 61  SLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPKRYKRWPML 120
           SL  + +I L +F A  P +STHTP ML +T S GIGREASSLE ELWCDPKR K W ML
Sbjct: 675 SL-LLRIICLLMFGAPNPTNSTHTPDMLSHTLSYGIGREASSLEEELWCDPKRSKSWLML 734

Query: 121 PTSGERSSGVRNH 133
            TSG RSS VRNH
Sbjct: 735 QTSGGRSSDVRNH 746

[Close]

BLAST of IVF0026409 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (329), Expect = 2.53e-35
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 53  KSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREASSLEGELWCDPK 112
           KSG  T+SS+C VLVI LSIF A  PR+STHTPGMLP+ FS GI REA SLEGELWCDPK
Sbjct: 130 KSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCDPK 189

Query: 113 RYKRWPMLPTSGERSSGVRNH 133
           R +RWPMLPTSG+RSS VRNH
Sbjct: 190 RSERWPMLPTSGKRSSDVRNH 210

[Close]

BLAST of IVF0026409 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 4.51e-35
Identity = 68/92 (73.91%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 42  MPRTQFSCLGAKSGTSTISSLCFVLVISLSIFEARTPRSSTHTPGMLPNTFSQGIGREAS 101
           MPRTQFS   AK           VLVISLSIFEART R+STHT GMLP+ F+QGIGREAS
Sbjct: 1   MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 102 SLEGELWCDPKRYKRWPMLPTSGERSSGVRNH 133
           SLEGELW DPKR+KRWPML TSGER SGVRNH
Sbjct: 61  SLEGELWFDPKRFKRWPMLATSGERLSGVRNH 92

The following BLAST results are available for this feature:

BLAST of IVF0026409 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026409 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	2.9e-51	77.44	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3DFP2	3.9e-40	54.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DIF8	2.6e-36	66.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5A7V368	2.9e-27	73.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CQ36	3.8e-27	72.63	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of IVF0026409 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	4.77e-60	77.44	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK22521.1	5.44e-48	54.01	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
TYK23424.1	7.09e-43	66.17	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15439.1	2.53e-35	76.54	uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]	[more]
KAA0061317.1	4.51e-35	73.91	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]

BLAST of IVF0026409 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026409.1	IVF0026409.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity