IVF0026397 (gene) Melon (IVF77) v1

Overview


Name	IVF0026397
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag protease polyprotein
Location	chr11: 23956947 .. 23957162 (-)
RNA-Seq Expression	IVF0026397
Synteny	IVF0026397

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCAAGGAGAGGTGCACGTAGGGGTGGTCGAGGAGGCCGTGGAAGGGGAGCAGGACGCGTTCAGCCTGAGGTGCAGCCTGTAGCCCAAGCCCCTGACCCGACTGCGCCAGTTACTCATGCGGGCCTAGCCGCCATGGAGCAGAGGTTTAGAGATATGATTATGCAGATGCGGGAGCAGCAGCCTGTTGCAGGAGAGGGCCAACTCGTCTAA

mRNA sequence

ATGCCACCAAGGAGAGGTGCACGTAGGGGTGGTCGAGGAGGCCGTGGAAGGGGAGCAGGACGCGTTCAGCCTGAGGTGCAGCCTGTAGCCCAAGCCCCTGACCCGACTGCGCCAGTTACTCATGCGGGCCTAGCCGCCATGGAGCAGAGGTTTAGAGATATGATTATGCAGATGCGGGAGCAGCAGCCTGTTGCAGGAGAGGGCCAACTCGTCTAA

Coding sequence (CDS)

ATGCCACCAAGGAGAGGTGCACGTAGGGGTGGTCGAGGAGGCCGTGGAAGGGGAGCAGGACGCGTTCAGCCTGAGGTGCAGCCTGTAGCCCAAGCCCCTGACCCGACTGCGCCAGTTACTCATGCGGGCCTAGCCGCCATGGAGCAGAGGTTTAGAGATATGATTATGCAGATGCGGGAGCAGCAGCCTGTTGCAGGAGAGGGCCAACTCGTCTAA

Protein sequence

MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMREQQPVAGEGQLV

Homology

[Close]

BLAST of IVF0026397 vs. ExPASy TrEMBL
Match: A0A5A7UJE2 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001490 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
           MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHA LAAMEQRFRD+IMQMRE
Sbjct: 188 MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHADLAAMEQRFRDLIMQMRE 247

Query: 61  QQPVA 66
           QQ  A
Sbjct: 248 QQKPA 252

[Close]

BLAST of IVF0026397 vs. ExPASy TrEMBL
Match: A0A5A7UI54 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004990 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDP APVTHA LAAMEQRFRDMIMQMRE
Sbjct: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMRE 60

Query: 61 QQPVA 66
          QQ  A
Sbjct: 61 QQKPA 65

[Close]

BLAST of IVF0026397 vs. ExPASy TrEMBL
Match: A0A5A7SVV6 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00010 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDP APVTHA LAAMEQRFRDMIMQMRE
Sbjct: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMRE 60

Query: 61 QQPVA 66
          QQ  A
Sbjct: 61 QQKPA 65

[Close]

BLAST of IVF0026397 vs. ExPASy TrEMBL
Match: A0A5A7T3M7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold69G00720 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDP APVTHA LAAMEQRFRDMIMQMRE
Sbjct: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMRE 60

Query: 61 QQPVA 66
          QQ  A
Sbjct: 61 QQKPA 65

[Close]

BLAST of IVF0026397 vs. ExPASy TrEMBL
Match: A0A5D3BPI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002120 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
           MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDP APVTHA LAAMEQRFRDMIMQMRE
Sbjct: 228 MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMRE 287

Query: 61  QQPVA 66
           QQ  A
Sbjct: 288 QQKPA 292

[Close]

BLAST of IVF0026397 vs. NCBI nr
Match: KAA0034778.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 6.42e-31
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDP APVTHA LAAMEQRFRDMIMQMRE
Sbjct: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDMIMQMRE 60

Query: 61 QQPVA 65
          QQ  A
Sbjct: 61 QQKPA 65

[Close]

BLAST of IVF0026397 vs. NCBI nr
Match: KAA0055895.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 9.98e-31
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRG+GAGRVQPEVQPVAQAPDP APVTHA LAAMEQRFRD+IMQMRE
Sbjct: 1  MPPRRGARRGGRGGRGKGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDLIMQMRE 60

Query: 61 QQPVA 65
          QQ  A
Sbjct: 61 QQKPA 65

[Close]

BLAST of IVF0026397 vs. NCBI nr
Match: TYK22524.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 2.61e-30
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDP APVTHA LAAMEQRFRD+IMQMRE
Sbjct: 19 MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDLIMQMRE 78

Query: 61 QQPVA 65
          QQ  A
Sbjct: 79 QQKPA 83

[Close]

BLAST of IVF0026397 vs. NCBI nr
Match: KAA0040379.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 4.66e-30
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRGRGAGRVQPEVQPVA APDP AP+THA LAAMEQRFRD+IMQMRE
Sbjct: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAPAPDPAAPITHADLAAMEQRFRDLIMQMRE 60

Query: 61 QQPVA 65
          QQ  A
Sbjct: 61 QQKPA 65

[Close]

BLAST of IVF0026397 vs. NCBI nr
Match: KAA0062895.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (281), Expect = 5.74e-30
Identity = 59/65 (90.77%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1  MPPRRGARRGGRGGRGRGAGRVQPEVQPVAQAPDPTAPVTHAGLAAMEQRFRDMIMQMRE 60
          MPPRRGARRGGRGGRGRGA RVQPEVQPVAQAPDP APVTHA LAAMEQRFRD+IMQMRE
Sbjct: 1  MPPRRGARRGGRGGRGRGARRVQPEVQPVAQAPDPAAPVTHADLAAMEQRFRDLIMQMRE 60

Query: 61 QQPVA 65
          QQ  A
Sbjct: 61 QQKPA 65

The following BLAST results are available for this feature:

BLAST of IVF0026397 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026397 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJE2	1.8e-23	93.85	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7UI54	3.0e-23	93.85	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7SVV6	3.0e-23	93.85	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7T3M7	3.0e-23	93.85	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3BPI1	3.0e-23	93.85	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45...	[more]

BLAST of IVF0026397 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034778.1	6.42e-31	93.85	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0055895.1	9.98e-31	90.77	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK22524.1	2.61e-30	92.31	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040379.1	4.66e-30	89.23	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0062895.1	5.74e-30	90.77	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026397 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026397.1	IVF0026397.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding