IVF0026362 (gene) Melon (IVF77) v1

Overview


Name	IVF0026362
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr09: 15140851 .. 15141123 (-)
RNA-Seq Expression	IVF0026362
Synteny	IVF0026362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCCGAGTCTCCATCGCGTCTCCTCCTTCGTTCATGTCTCGTCGTTTTCCGTCGTGTCCTTCAACTGTGCAGCAGCGTCGTCGACGAGCCTTCATCAATCATCGATCATCGCGTGAGTCTAAGCCAGGTTCAGCAAACGCAAGCCGAGTCGTTCTTCACAAACCAAACCACCTGAATCGTCACCTCCTCACAAGTCGCGTGAACTCCAAGCTGTCTGCAAGCCGCGCATCCCAGCCGATCTTCATTCCGAGTCGTATCCTTGTGTAA

mRNA sequence

ATGTCGAGCCGAGTCTCCATCGCGTCTCCTCCTTCGTTCATGTCTCGTCGTTTTCCGTCGTGTCCTTCAACTGTGCAGCAGCGTCGTCGACGAGCCTTCATCAATCATCGATCATCGCGTGAGTCTAAGCCAGGTTCAGCAAACGCAAGCCGAGTCGTTCTTCACAAACCAAACCACCTGAATCGTCACCTCCTCACAAGTCGCGTGAACTCCAAGCTGTCTGCAAGCCGCGCATCCCAGCCGATCTTCATTCCGAGTCGTATCCTTGTGTAA

Coding sequence (CDS)

ATGTCGAGCCGAGTCTCCATCGCGTCTCCTCCTTCGTTCATGTCTCGTCGTTTTCCGTCGTGTCCTTCAACTGTGCAGCAGCGTCGTCGACGAGCCTTCATCAATCATCGATCATCGCGTGAGTCTAAGCCAGGTTCAGCAAACGCAAGCCGAGTCGTTCTTCACAAACCAAACCACCTGAATCGTCACCTCCTCACAAGTCGCGTGAACTCCAAGCTGTCTGCAAGCCGCGCATCCCAGCCGATCTTCATTCCGAGTCGTATCCTTGTGTAA

Protein sequence

MSSRVSIASPPSFMSRRFPSCPSTVQQRRRRAFINHRSSRESKPGSANASRVVLHKPNHLNRHLLTSRVNSKLSASRASQPIFIPSRILV

Homology

[Close]

BLAST of IVF0026362 vs. ExPASy TrEMBL
Match: A0A5A7T374 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold529G00280 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.4e-19
Identity = 59/86 (68.60%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MSSRVSIASPPSFMSRRFPSCPSTVQQRRRRAFINHRSSRESKPGSANASRVVLHKPNHL 60
           MSS+VS+ASPPSF      S P  VQQR RRA IN +SSRESKP SAN S+VVL KPNH 
Sbjct: 408 MSSQVSVASPPSFTPCHLSSRPLAVQQRHRRALINRQSSRESKPSSANTSQVVLRKPNHP 467

Query: 61  NRHLLTSRVNSKLSASRASQPIFIPS 87
           + HLL SR NSKL ASR SQ IFIPS
Sbjct: 468 SCHLLVSRANSKLFASRTSQSIFIPS 493

[Close]

BLAST of IVF0026362 vs. NCBI nr
Match: KAA0035915.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa] >TYK19067.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (254), Expect = 5.71e-23
Identity = 59/86 (68.60%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   MSSRVSIASPPSFMSRRFPSCPSTVQQRRRRAFINHRSSRESKPGSANASRVVLHKPNHL 60
           MSS+VS+ASPPSF      S P  VQQR RRA IN +SSRESKP SAN S+VVL KPNH 
Sbjct: 408 MSSQVSVASPPSFTPCHLSSRPLAVQQRHRRALINRQSSRESKPSSANTSQVVLRKPNHP 467

Query: 61  NRHLLTSRVNSKLSASRASQPIFIPS 86
           + HLL SR NSKL ASR SQ IFIPS
Sbjct: 468 SCHLLVSRANSKLFASRTSQSIFIPS 493

The following BLAST results are available for this feature:

BLAST of IVF0026362 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T374	3.4e-19	68.60	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak...	[more]

BLAST of IVF0026362 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035915.1	5.71e-23	68.60	Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw...	[more]

BLAST of IVF0026362 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026362.1	IVF0026362.1	mRNA