IVF0026331 (gene) Melon (IVF77) v1

Overview


Name	IVF0026331
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	3'(2'),5'-bisphosphate nucleotidase
Location	chr04: 7743339 .. 7743766 (-)
RNA-Seq Expression	IVF0026331
Synteny	IVF0026331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGGAGAGTACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGTCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGATGATGATTCTCCGGTGACAATTGCCGGTATTCTTTCTTTATTTTGTTGTTTTATCGATGTTCCTTTTCTTGTTGTTGTTGAATGTTACTGTTGATTGCGTTTTGTTTTAACTTTGAAGTGGGAACTGCATGTTATATGTTTGTGTTTGTTTGGCTTATGGAAAATGTAAGAAAATGAATATATGTAATGTATTTGATACTTTGTTGAGATCAAGAAGACACCGTAAAGTCTAATGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATCATTCTCTGTTTTTGTAATTTAGTTTCATGA

mRNA sequence

ATGGAGGATGGAGAGTACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGTCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGATGATGATTCTCCGGTGACAATTGCCGATCAAGAAGACACCGTAAAGTCTAATGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATCATTCTCTGTTTTTGTAATTTAGTTTCATGA

Coding sequence (CDS)

ATGGAGGATGGAGAGTACTCGAAGGAGTTGGATATTGCGGTTCGTGTTGTTCATTTGTCTTGTGCTCTTTGCCGTAGAGTTCAAGAGGGTTTGCTTGAAAACGGCAATGCTCAGGTTAAGGCCAAGGATGATGATTCTCCGGTGACAATTGCCGATCAAGAAGACACCGTAAAGTCTAATGCTGTCATTGTGGGGTACAGGTTGTTTTCATCCATCATTCTCTGTTTTTGTAATTTAGTTTCATGA

Protein sequence

MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTVKSNAVIVGYRLFSSIILCFCNLVS

Homology

[Close]

BLAST of IVF0026331 vs. ExPASy Swiss-Prot
Match: Q38945 (PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana OX=3702 GN=AHL PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-07
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 9  ELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          E+D AVRVVHL+ +LC +VQE L       VK+KDDDSPVT+AD
Sbjct: 9  EIDTAVRVVHLASSLCVKVQEKLHLPNGGHVKSKDDDSPVTVAD 52

[Close]

BLAST of IVF0026331 vs. ExPASy TrEMBL
Match: A0A0A0LDM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851880 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.6e-36
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTVKSN 60
          MEDGEYSKELDIAVRVVHL+CALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDT+KSN
Sbjct: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIADQEDTIKSN 60

Query: 61 AVIVGYRLFSSIILCFCNLVS 82
          AVIVGYRLFSSIILCFCNLVS
Sbjct: 61 AVIVGYRLFSSIILCFCNLVS 81

[Close]

BLAST of IVF0026331 vs. ExPASy TrEMBL
Match: A0A1S3BZX2 (3'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo OX=3656 GN=LOC103495010 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.6e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52

[Close]

BLAST of IVF0026331 vs. ExPASy TrEMBL
Match: A0A5A7SZZ4 (PAP-specific phosphatase HAL2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002040 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.8e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA 52
          MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA 51

[Close]

BLAST of IVF0026331 vs. ExPASy TrEMBL
Match: A0A6J1CDT6 (3'(2'),5'-bisphosphate nucleotidase OS=Momordica charantia OX=3673 GN=LOC111010569 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.8e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          MEDGEYSKELD+AVRVVHL+CALCRRVQEGLL  GNAQV AKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDMAVRVVHLACALCRRVQEGLLSAGNAQVMAKDDDSPVTIAD 52

[Close]

BLAST of IVF0026331 vs. ExPASy TrEMBL
Match: A0A6J1J227 (3'(2'),5'-bisphosphate nucleotidase OS=Cucurbita maxima OX=3661 GN=LOC111480604 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-15
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          ME+GEYSKELD+AVRVVHL+CALCRRVQEGLL  GN  VKAKDDDSPVTIAD
Sbjct: 1  MENGEYSKELDMAVRVVHLACALCRRVQEGLLLVGNDLVKAKDDDSPVTIAD 52

[Close]

BLAST of IVF0026331 vs. NCBI nr
Match: KAA0036834.1 (PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa] >TYJ95901.1 PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 6.40e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA 51
          MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIA 51

[Close]

BLAST of IVF0026331 vs. NCBI nr
Match: XP_008454658.1 (PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo])

HSP 1 Score: 105 bits (262), Expect = 8.87e-25
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52
          MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52

[Close]

BLAST of IVF0026331 vs. NCBI nr
Match: XP_004150105.1 (PAP-specific phosphatase HAL2-like isoform X1 [Cucumis sativus] >KAE8651309.1 hypothetical protein Csa_002485 [Cucumis sativus])

HSP 1 Score: 104 bits (259), Expect = 2.40e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52
          MEDGEYSKELDIAVRVVHL+CALCRRVQEGLLENGNAQVKAKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDIAVRVVHLACALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52

[Close]

BLAST of IVF0026331 vs. NCBI nr
Match: XP_038897109.1 (PAP-specific phosphatase HAL2-like [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.27e-21
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52
          MEDGEYSKELD+AVRVVHL+CALCRRVQ+GLLE GN+Q+KAKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDMAVRVVHLACALCRRVQKGLLEAGNSQIKAKDDDSPVTIAD 52

[Close]

BLAST of IVF0026331 vs. NCBI nr
Match: XP_022139719.1 (PAP-specific phosphatase HAL2-like [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 3.40e-21
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1  MEDGEYSKELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 52
          MEDGEYSKELD+AVRVVHL+CALCRRVQEGLL  GNAQV AKDDDSPVTIAD
Sbjct: 1  MEDGEYSKELDMAVRVVHLACALCRRVQEGLLSAGNAQVMAKDDDSPVTIAD 52

[Close]

BLAST of IVF0026331 vs. TAIR 10
Match: AT5G54390.1 (HAL2-like )

HSP 1 Score: 55.5 bits (132), Expect = 2.4e-08
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 9  ELDIAVRVVHLSCALCRRVQEGLLENGNAQVKAKDDDSPVTIAD 53
          E+D AVRVVHL+ +LC +VQE L       VK+KDDDSPVT+AD
Sbjct: 9  EIDTAVRVVHLASSLCVKVQEKLHLPNGGHVKSKDDDSPVTVAD 52

The following BLAST results are available for this feature:

BLAST of IVF0026331 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38945	3.3e-07	61.36	PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana OX=3702 GN=AHL PE=2 S...	[more]

BLAST of IVF0026331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDM4	3.6e-36	97.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851880 PE=4 SV=1	[more]
A0A1S3BZX2	3.6e-20	100.00	3'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo OX=3656 GN=LOC103495010 PE=3...	[more]
A0A5A7SZZ4	1.8e-19	100.00	PAP-specific phosphatase HAL2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1CDT6	2.8e-17	90.38	3'(2'),5'-bisphosphate nucleotidase OS=Momordica charantia OX=3673 GN=LOC1110105...	[more]
A0A6J1J227	2.0e-15	86.54	3'(2'),5'-bisphosphate nucleotidase OS=Cucurbita maxima OX=3661 GN=LOC111480604 ...	[more]

BLAST of IVF0026331 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036834.1	6.40e-27	100.00	PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa] >TYJ95901.1 PAP-sp...	[more]
XP_008454658.1	8.87e-25	100.00	PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo]	[more]
XP_004150105.1	2.40e-24	98.08	PAP-specific phosphatase HAL2-like isoform X1 [Cucumis sativus] >KAE8651309.1 hy...	[more]
XP_038897109.1	1.27e-21	88.46	PAP-specific phosphatase HAL2-like [Benincasa hispida]	[more]
XP_022139719.1	3.40e-21	90.38	PAP-specific phosphatase HAL2-like [Momordica charantia]	[more]

BLAST of IVF0026331 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54390.1	2.4e-08	61.36	HAL2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.540.10		coord: 5..65 e-value: 1.2E-10 score: 43.3
None	No IPR available	PANTHER	PTHR43200	PHOSPHATASE	coord: 3..53
None	No IPR available	PANTHER	PTHR43200:SF23	PAP-SPECIFIC PHOSPHATASE HAL2-LIKE	coord: 3..53
None	No IPR available	SUPERFAMILY	56655	Carbohydrate phosphatase	coord: 6..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026331.1	IVF0026331.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046855	inositol phosphate dephosphorylation
biological_process	GO:0046854	phosphatidylinositol phosphate biosynthetic process
biological_process	GO:0006790	sulfur compound metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008441	3'(2'),5'-bisphosphate nucleotidase activity
molecular_function	GO:0046872	metal ion binding