IVF0026268 (gene) Melon (IVF77) v1

Overview
NameIVF0026268
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pro-like protein
Locationchr04: 14819199 .. 14819441 (-)
RNA-Seq ExpressionIVF0026268
SyntenyIVF0026268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAAAGAATGTTGAAACTTTTAAGGAATATGCACATCGATGGAGAGAGTTAGCTGTACAAGTGCAACCTCCCCTGACCGATAAAGAATTGATGGTTATGTTCATAAACACTCTTCGGGCCCCATACTATGATAGAATGGTTGGAAGTGCTTCAACTAATTTCTCGGACATCATAACCATTGGAGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCTCTGATCCCGCTTCATAG

mRNA sequence

ATGGAAAAAAAGAATGTTGAAACTTTTAAGGAATATGCACATCGATGGAGAGAGTTAGCTGTACAAGTGCAACCTCCCCTGACCGATAAAGAATTGATGGTTATGTTCATAAACACTCTTCGGGCCCCATACTATGATAGAATGGTTGGAAGTGCTTCAACTAATTTCTCGGACATCATAACCATTGGAGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCTCTGATCCCGCTTCATAG

Coding sequence (CDS)

ATGGAAAAAAAGAATGTTGAAACTTTTAAGGAATATGCACATCGATGGAGAGAGTTAGCTGTACAAGTGCAACCTCCCCTGACCGATAAAGAATTGATGGTTATGTTCATAAACACTCTTCGGGCCCCATACTATGATAGAATGGTTGGAAGTGCTTCAACTAATTTCTCGGACATCATAACCATTGGAGAGAGGATTGAATTTGGAGTGAAGAATGGAAGGATCTCTGATCCCGCTTCATAG

Protein sequence

MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDIITIGERIEFGVKNGRISDPAS
Homology
[Close]
BLAST of IVF0026268 vs. ExPASy TrEMBL
Match: A0A5A7U4N8 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00580 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII
Sbjct: 240 MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 299

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEFGVKNGRISDPAS
Sbjct: 300 TIGERIEFGVKNGRISDPAS 319

[Close]
BLAST of IVF0026268 vs. ExPASy TrEMBL
Match: A0A1S3BHD8 (uncharacterized protein LOC103490085 OS=Cucumis melo OX=3656 GN=LOC103490085 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.4e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII
Sbjct: 240 MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 299

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEFGVKNGRISDPAS
Sbjct: 300 TIGERIEFGVKNGRISDPAS 319

[Close]
BLAST of IVF0026268 vs. ExPASy TrEMBL
Match: A0A5A7ULI2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00770 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYA RWRELA QVQPPLTDKELM MFINTLRAPYYDRMVGSASTNFSD+I
Sbjct: 254 MEKKNVETFKEYAQRWRELAAQVQPPLTDKELMAMFINTLRAPYYDRMVGSASTNFSDVI 313

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEFGVKNGRISDPAS
Sbjct: 314 TIGERIEFGVKNGRISDPAS 333

[Close]
BLAST of IVF0026268 vs. ExPASy TrEMBL
Match: A0A5A7TCG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00600 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.3e-35
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYA RWRELA QVQPPLTDKELM MFINTLRAPYYDRMVGSASTNFSD+I
Sbjct: 171 MEKKNVETFKEYAQRWRELAAQVQPPLTDKELMAMFINTLRAPYYDRMVGSASTNFSDVI 230

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEFGVKNGRISDPAS
Sbjct: 231 TIGERIEFGVKNGRISDPAS 250

[Close]
BLAST of IVF0026268 vs. ExPASy TrEMBL
Match: A0A5A7SNV0 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002750 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.9e-35
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKN ETFKEYAHRWRELA QVQPPLTDKELM MFINT+RAPYYDRMVGSASTNFSD+I
Sbjct: 105 MEKKNAETFKEYAHRWRELAAQVQPPLTDKELMTMFINTIRAPYYDRMVGSASTNFSDVI 164

Query: 61  TIGERIEFGVKNGRISDPAS 81
           TIGERIEFGVKNGRISDP S
Sbjct: 165 TIGERIEFGVKNGRISDPTS 184

[Close]
BLAST of IVF0026268 vs. NCBI nr
Match: XP_008447676.1 (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo] >KAA0050803.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (409), Expect = 4.76e-47
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII
Sbjct: 240 MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 299

Query: 61  TIGERIEFGVKNGRISDPAS 80
           TIGERIEFGVKNGRISDPAS
Sbjct: 300 TIGERIEFGVKNGRISDPAS 319

[Close]
BLAST of IVF0026268 vs. NCBI nr
Match: KAA0026273.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 8.38e-46
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKN ETFKEYAHRWRELA QVQPPLTDKELM MFINT+RAPYYDRMVGSASTNFSD+I
Sbjct: 105 MEKKNAETFKEYAHRWRELAAQVQPPLTDKELMTMFINTIRAPYYDRMVGSASTNFSDVI 164

Query: 61  TIGERIEFGVKNGRISDPAS 80
           TIGERIEFGVKNGRISDP S
Sbjct: 165 TIGERIEFGVKNGRISDPTS 184

[Close]
BLAST of IVF0026268 vs. NCBI nr
Match: TYK21469.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 2.88e-45
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKN ETFKEYAHRWRELA QVQPPLTDKELM MFINT+RAPYYDRMVGSASTNFSD+I
Sbjct: 147 MEKKNAETFKEYAHRWRELAAQVQPPLTDKELMTMFINTIRAPYYDRMVGSASTNFSDVI 206

Query: 61  TIGERIEFGVKNGRISDPAS 80
           TIGERIEFGVKNGRISDP S
Sbjct: 207 TIGERIEFGVKNGRISDPTS 226

[Close]
BLAST of IVF0026268 vs. NCBI nr
Match: KAA0038979.1 (uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 2.01e-43
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEKKNVETFKEYA RWRELA QVQPPLTDKELM MFINTLRAPYYDRMVGSASTNFSD+I
Sbjct: 171 MEKKNVETFKEYAQRWRELAAQVQPPLTDKELMAMFINTLRAPYYDRMVGSASTNFSDVI 230

Query: 61  TIGERIEFGVKNGRISDPAS 80
           TIGERIEFGVKNGRISDPAS
Sbjct: 231 TIGERIEFGVKNGRISDPAS 250

[Close]
BLAST of IVF0026268 vs. NCBI nr
Match: KAA0056810.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYJ99931.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (381), Expect = 1.00e-42
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 1   MEKKNVETFKEYAHRWRELAVQVQPPLTDKELMVMFINTLRAPYYDRMVGSASTNFSDII 60
           MEK NVE FKEYAHRWREL  QVQPPLTDKELM MFINTLRAPYYDRMVGSASTNFSD+I
Sbjct: 240 MEKNNVENFKEYAHRWRELDAQVQPPLTDKELMAMFINTLRAPYYDRMVGSASTNFSDVI 299

Query: 61  TIGERIEFGVKNGRISDPAS 80
           T+GERIEFGVKNGRISDPAS
Sbjct: 300 TMGERIEFGVKNGRISDPAS 319

The following BLAST results are available for this feature:
BLAST of IVF0026268 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0026268 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U4N82.4e-37100.00Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404... [more]
A0A1S3BHD82.4e-37100.00uncharacterized protein LOC103490085 OS=Cucumis melo OX=3656 GN=LOC103490085 PE=... [more]
A0A5A7ULI22.3e-3595.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TCG92.3e-3595.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SNV03.9e-3592.50Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G... [more]
BLAST of IVF0026268 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447676.14.76e-47100.00PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo] >KAA0050803.1 Gag... [more]
KAA0026273.18.38e-4692.50Gag-pro-like protein [Cucumis melo var. makuwa][more]
TYK21469.12.88e-4592.50Gag-pro-like protein [Cucumis melo var. makuwa][more]
KAA0038979.12.01e-4395.00uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa][more]
KAA0056810.11.00e-4291.25Gag-pro-like protein [Cucumis melo var. makuwa] >TYJ99931.1 Gag-pro-like protein... [more]
BLAST of IVF0026268 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026268.1IVF0026268.1mRNA