Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAGACGAGCGAGACGATGTTCCTTTAGCCAGATTGTTAAAGAAAGGGTTATTTTCCAATGTTGTCCCAGCTAAATCTTTTGATCTTGACATGTCAACTCATCCTCATGAGAGCTTCTCCTCTAAAGATGTATTTGTTCCAACACCGGGTCATCTGCCTACGACAAATGAAGAAGCTAGTCCATTACATCGTTCACCACTGGTTCAGTCATCGATTCAGGTTGATGGTTCTGTTACAAATCAGCGGTTAGTGCCTGAACATAATCCTGTTGATGAATCTACTAAGATTGTGGGAAGGAATGATGTTCCTGTTGTTAAGTCTCCGGTTGCTGCTCGGTCTCATGCTACTGATGAACATGTCGGCCCGACTGATACTTGTGCAACGAATACTGTTGAACTAGATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTTCTGGTGTATCTAGGCCAAATGGAAAGAAGGTTTAG
mRNA sequence
ATGGATTCAGACGAGCGAGACGATGTTCCTTTAGCCAGATTGTTAAAGAAAGGGTTATTTTCCAATGTTGTCCCAGCTAAATCTTTTGATCTTGACATGTCAACTCATCCTCATGAGAGCTTCTCCTCTAAAGATGTATTTGTTCCAACACCGGGTCATCTGCCTACGACAAATGAAGAAGCTAGTCCATTACATCGTTCACCACTGGTTCAGTCATCGATTCAGGTTGATGGTTCTGTTACAAATCAGCGGTTAGTGCCTGAACATAATCCTGTTGATGAATCTACTAAGATTGTGGGAAGGAATGATGTTCCTGTTGTTAAGTCTCCGGTTGCTGCTCGGTCTCATGCTACTGATGAACATGTCGGCCCGACTGATACTTGTGCAACGAATACTGTTGAACTAGATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTTCTGGTGTATCTAGGCCAAATGGAAAGAAGGTTTAG
Coding sequence (CDS)
ATGGATTCAGACGAGCGAGACGATGTTCCTTTAGCCAGATTGTTAAAGAAAGGGTTATTTTCCAATGTTGTCCCAGCTAAATCTTTTGATCTTGACATGTCAACTCATCCTCATGAGAGCTTCTCCTCTAAAGATGTATTTGTTCCAACACCGGGTCATCTGCCTACGACAAATGAAGAAGCTAGTCCATTACATCGTTCACCACTGGTTCAGTCATCGATTCAGGTTGATGGTTCTGTTACAAATCAGCGGTTAGTGCCTGAACATAATCCTGTTGATGAATCTACTAAGATTGTGGGAAGGAATGATGTTCCTGTTGTTAAGTCTCCGGTTGCTGCTCGGTCTCATGCTACTGATGAACATGTCGGCCCGACTGATACTTGTGCAACGAATACTGTTGAACTAGATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTTCTGGTGTATCTAGGCCAAATGGAAAGAAGGTTTAG
Protein sequence
MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV
Homology
BLAST of IVF0026192 vs. ExPASy TrEMBL
Match:
A0A5D3E8I4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00840 PE=4 SV=1)
HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE
Sbjct: 92 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 151
Query: 61 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE
Sbjct: 152 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 211
Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 160
HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV
Sbjct: 212 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 250
BLAST of IVF0026192 vs. ExPASy TrEMBL
Match:
A0A5A7VE22 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00270 PE=4 SV=1)
HSP 1 Score: 199.5 bits (506), Expect = 1.0e-47
Identity = 108/158 (68.35%), Postives = 122/158 (77.22%), Query Frame = 0
Query: 1 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
MD +ERDDVPLARLLKKGLFSNVVPAKS D STH HES S KD+FVPTP H PTTNE
Sbjct: 461 MDFNERDDVPLARLLKKGLFSNVVPAKSIDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 520
Query: 61 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
A SPLV+SSIQVD SVT+ RLVP+ NP+D++T+ VGRNDVPV +S + D
Sbjct: 521 AGQSGPSPLVKSSIQVDASVTDHRLVPDSNPIDKTTENVGRNDVPVDESII------IDA 580
Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 159
HV T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 581 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 612
BLAST of IVF0026192 vs. ExPASy TrEMBL
Match:
A0A5D3E0G7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00620 PE=4 SV=1)
HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 107/158 (67.72%), Postives = 122/158 (77.22%), Query Frame = 0
Query: 1 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
MD +ERDDVPLARLLKKGLFSNVVPAKS D STH HES S KD+FVPTP H PTTNE
Sbjct: 382 MDFNERDDVPLARLLKKGLFSNVVPAKSVDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 441
Query: 61 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
A SPLV+SSIQVD S+T+ RLVP+ NP+D++T+ VGRNDVPV +S + D
Sbjct: 442 AGQSGPSPLVKSSIQVDASITDHRLVPDSNPIDKTTENVGRNDVPVDESII------IDA 501
Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 159
HV T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 502 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 533
BLAST of IVF0026192 vs. ExPASy TrEMBL
Match:
A0A5A7T1I3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001300 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 95/136 (69.85%), Postives = 107/136 (78.68%), Query Frame = 0
Query: 24 VPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEASPLHRSPLVQSSIQVDGSVTNQ 83
V AKS + ++ + HES S +DVF PTPGH PTTN EA P RSP +QSSIQVD SVTNQ
Sbjct: 82 VLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQ 141
Query: 84 RLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHVGPTDTCATNTVELDVNDELQS 143
V +HNP+D+ST+ VGRNDV VV+SP AA S A +EHV PTDTCATNTVELDVNDELQ
Sbjct: 142 SSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQL 201
Query: 144 ETQQSSGVSRPNGKKV 160
ETQQS GVSRP GKKV
Sbjct: 202 ETQQSPGVSRPKGKKV 217
BLAST of IVF0026192 vs. ExPASy TrEMBL
Match:
A0A5A7U645 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00870 PE=4 SV=1)
HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 94/156 (60.26%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 5 ERDDV--PLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEAS 64
E DDV LAR LKKGLF VVP KS D STH HES ++D+FVPTPGH TNE A
Sbjct: 5 EHDDVMPELARFLKKGLFFKVVPTKSVDPVTSTHSHESSFTEDIFVPTPGHSLVTNEGAR 64
Query: 65 PLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHV 124
RSP ++SSIQV+ SV +QRLVPE NPVD+STK VGRNDV V +SP TD HV
Sbjct: 65 QSRRSPSIKSSIQVNASVIDQRLVPEPNPVDDSTKNVGRNDVSVDESP------TTDAHV 124
Query: 125 GPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 159
P +TC T+T+E DVN++ Q ETQ GVSRP GKK
Sbjct: 125 EPINTCTTDTIEPDVNNDFQLETQHPLGVSRPKGKK 154
BLAST of IVF0026192 vs. NCBI nr
Match:
KAA0048750.1 (uncharacterized protein E6C27_scaffold43G00540 [Cucumis melo var. makuwa] >TYK31585.1 uncharacterized protein E5676_scaffold172G00840 [Cucumis melo var. makuwa])
HSP 1 Score: 315 bits (807), Expect = 6.74e-107
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE
Sbjct: 92 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 151
Query: 61 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE
Sbjct: 152 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 211
Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 159
HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV
Sbjct: 212 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 250
BLAST of IVF0026192 vs. NCBI nr
Match:
TYK29294.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 198 bits (503), Expect = 2.49e-56
Identity = 107/158 (67.72%), Postives = 122/158 (77.22%), Query Frame = 0
Query: 1 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
MD +ERDDVPLARLLKKGLFSNVVPAKS D STH HES S KD+FVPTP H PTTNE
Sbjct: 382 MDFNERDDVPLARLLKKGLFSNVVPAKSVDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 441
Query: 61 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
A SPLV+SSIQVD S+T+ RLVP+ NP+D++T+ VGRNDVPV +S + D
Sbjct: 442 AGQSGPSPLVKSSIQVDASITDHRLVPDSNPIDKTTENVGRNDVPVDESIII------DA 501
Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 158
HV T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 502 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 533
BLAST of IVF0026192 vs. NCBI nr
Match:
KAA0065524.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 199 bits (505), Expect = 3.02e-56
Identity = 108/158 (68.35%), Postives = 122/158 (77.22%), Query Frame = 0
Query: 1 MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
MD +ERDDVPLARLLKKGLFSNVVPAKS D STH HES S KD+FVPTP H PTTNE
Sbjct: 461 MDFNERDDVPLARLLKKGLFSNVVPAKSIDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 520
Query: 61 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
A SPLV+SSIQVD SVT+ RLVP+ NP+D++T+ VGRNDVPV +S + D
Sbjct: 521 AGQSGPSPLVKSSIQVDASVTDHRLVPDSNPIDKTTENVGRNDVPVDESIII------DA 580
Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 158
HV T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 581 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 612
BLAST of IVF0026192 vs. NCBI nr
Match:
KAA0036773.1 (uncharacterized protein E6C27_scaffold20G00570 [Cucumis melo var. makuwa] >TYJ95841.1 uncharacterized protein E5676_scaffold110G001300 [Cucumis melo var. makuwa])
HSP 1 Score: 179 bits (454), Expect = 1.07e-53
Identity = 95/136 (69.85%), Postives = 107/136 (78.68%), Query Frame = 0
Query: 24 VPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEASPLHRSPLVQSSIQVDGSVTNQ 83
V AKS + ++ + HES S +DVF PTPGH PTTN EA P RSP +QSSIQVD SVTNQ
Sbjct: 82 VLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQ 141
Query: 84 RLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHVGPTDTCATNTVELDVNDELQS 143
V +HNP+D+ST+ VGRNDV VV+SP AA S A +EHV PTDTCATNTVELDVNDELQ
Sbjct: 142 SSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQL 201
Query: 144 ETQQSSGVSRPNGKKV 159
ETQQS GVSRP GKKV
Sbjct: 202 ETQQSPGVSRPKGKKV 217
BLAST of IVF0026192 vs. NCBI nr
Match:
KAA0051363.1 (uncharacterized protein E6C27_scaffold55G00870 [Cucumis melo var. makuwa])
HSP 1 Score: 165 bits (417), Expect = 3.75e-46
Identity = 94/156 (60.26%), Postives = 108/156 (69.23%), Query Frame = 0
Query: 5 ERDDV--PLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEAS 64
E DDV LAR LKKGLF VVP KS D STH HES ++D+FVPTPGH TNE A
Sbjct: 5 EHDDVMPELARFLKKGLFFKVVPTKSVDPVTSTHSHESSFTEDIFVPTPGHSLVTNEGAR 64
Query: 65 PLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHV 124
RSP ++SSIQV+ SV +QRLVPE NPVD+STK VGRNDV V +SP TD HV
Sbjct: 65 QSRRSPSIKSSIQVNASVIDQRLVPEPNPVDDSTKNVGRNDVSVDESPT------TDAHV 124
Query: 125 GPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 158
P +TC T+T+E DVN++ Q ETQ GVSRP GKK
Sbjct: 125 EPINTCTTDTIEPDVNNDFQLETQHPLGVSRPKGKK 154
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3E8I4 | 1.0e-82 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VE22 | 1.0e-47 | 68.35 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G0027... | [more] |
A0A5D3E0G7 | 1.8e-47 | 67.72 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G006... | [more] |
A0A5A7T1I3 | 1.5e-41 | 69.85 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U645 | 1.3e-37 | 60.26 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0048750.1 | 6.74e-107 | 100.00 | uncharacterized protein E6C27_scaffold43G00540 [Cucumis melo var. makuwa] >TYK31... | [more] |
TYK29294.1 | 2.49e-56 | 67.72 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0065524.1 | 3.02e-56 | 68.35 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
KAA0036773.1 | 1.07e-53 | 69.85 | uncharacterized protein E6C27_scaffold20G00570 [Cucumis melo var. makuwa] >TYJ95... | [more] |
KAA0051363.1 | 3.75e-46 | 60.26 | uncharacterized protein E6C27_scaffold55G00870 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |