IVF0026192 (gene) Melon (IVF77) v1

Overview
NameIVF0026192
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr01: 9150231 .. 9150710 (-)
RNA-Seq ExpressionIVF0026192
SyntenyIVF0026192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAGACGAGCGAGACGATGTTCCTTTAGCCAGATTGTTAAAGAAAGGGTTATTTTCCAATGTTGTCCCAGCTAAATCTTTTGATCTTGACATGTCAACTCATCCTCATGAGAGCTTCTCCTCTAAAGATGTATTTGTTCCAACACCGGGTCATCTGCCTACGACAAATGAAGAAGCTAGTCCATTACATCGTTCACCACTGGTTCAGTCATCGATTCAGGTTGATGGTTCTGTTACAAATCAGCGGTTAGTGCCTGAACATAATCCTGTTGATGAATCTACTAAGATTGTGGGAAGGAATGATGTTCCTGTTGTTAAGTCTCCGGTTGCTGCTCGGTCTCATGCTACTGATGAACATGTCGGCCCGACTGATACTTGTGCAACGAATACTGTTGAACTAGATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTTCTGGTGTATCTAGGCCAAATGGAAAGAAGGTTTAG

mRNA sequence

ATGGATTCAGACGAGCGAGACGATGTTCCTTTAGCCAGATTGTTAAAGAAAGGGTTATTTTCCAATGTTGTCCCAGCTAAATCTTTTGATCTTGACATGTCAACTCATCCTCATGAGAGCTTCTCCTCTAAAGATGTATTTGTTCCAACACCGGGTCATCTGCCTACGACAAATGAAGAAGCTAGTCCATTACATCGTTCACCACTGGTTCAGTCATCGATTCAGGTTGATGGTTCTGTTACAAATCAGCGGTTAGTGCCTGAACATAATCCTGTTGATGAATCTACTAAGATTGTGGGAAGGAATGATGTTCCTGTTGTTAAGTCTCCGGTTGCTGCTCGGTCTCATGCTACTGATGAACATGTCGGCCCGACTGATACTTGTGCAACGAATACTGTTGAACTAGATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTTCTGGTGTATCTAGGCCAAATGGAAAGAAGGTTTAG

Coding sequence (CDS)

ATGGATTCAGACGAGCGAGACGATGTTCCTTTAGCCAGATTGTTAAAGAAAGGGTTATTTTCCAATGTTGTCCCAGCTAAATCTTTTGATCTTGACATGTCAACTCATCCTCATGAGAGCTTCTCCTCTAAAGATGTATTTGTTCCAACACCGGGTCATCTGCCTACGACAAATGAAGAAGCTAGTCCATTACATCGTTCACCACTGGTTCAGTCATCGATTCAGGTTGATGGTTCTGTTACAAATCAGCGGTTAGTGCCTGAACATAATCCTGTTGATGAATCTACTAAGATTGTGGGAAGGAATGATGTTCCTGTTGTTAAGTCTCCGGTTGCTGCTCGGTCTCATGCTACTGATGAACATGTCGGCCCGACTGATACTTGTGCAACGAATACTGTTGAACTAGATGTTAATGATGAACTCCAATCAGAGACTCAACAATCTTCTGGTGTATCTAGGCCAAATGGAAAGAAGGTTTAG

Protein sequence

MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV
Homology
BLAST of IVF0026192 vs. ExPASy TrEMBL
Match: A0A5D3E8I4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00840 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query: 1   MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
           MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE
Sbjct: 92  MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 151

Query: 61  ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
           ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE
Sbjct: 152 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 211

Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 160
           HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV
Sbjct: 212 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 250

BLAST of IVF0026192 vs. ExPASy TrEMBL
Match: A0A5A7VE22 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00270 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.0e-47
Identity = 108/158 (68.35%), Postives = 122/158 (77.22%), Query Frame = 0

Query: 1   MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
           MD +ERDDVPLARLLKKGLFSNVVPAKS D   STH HES S KD+FVPTP H PTTNE 
Sbjct: 461 MDFNERDDVPLARLLKKGLFSNVVPAKSIDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 520

Query: 61  ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
           A     SPLV+SSIQVD SVT+ RLVP+ NP+D++T+ VGRNDVPV +S +       D 
Sbjct: 521 AGQSGPSPLVKSSIQVDASVTDHRLVPDSNPIDKTTENVGRNDVPVDESII------IDA 580

Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 159
           HV  T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 581 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 612

BLAST of IVF0026192 vs. ExPASy TrEMBL
Match: A0A5D3E0G7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00620 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 107/158 (67.72%), Postives = 122/158 (77.22%), Query Frame = 0

Query: 1   MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
           MD +ERDDVPLARLLKKGLFSNVVPAKS D   STH HES S KD+FVPTP H PTTNE 
Sbjct: 382 MDFNERDDVPLARLLKKGLFSNVVPAKSVDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 441

Query: 61  ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
           A     SPLV+SSIQVD S+T+ RLVP+ NP+D++T+ VGRNDVPV +S +       D 
Sbjct: 442 AGQSGPSPLVKSSIQVDASITDHRLVPDSNPIDKTTENVGRNDVPVDESII------IDA 501

Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 159
           HV  T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 502 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 533

BLAST of IVF0026192 vs. ExPASy TrEMBL
Match: A0A5A7T1I3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001300 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.5e-41
Identity = 95/136 (69.85%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 24  VPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEASPLHRSPLVQSSIQVDGSVTNQ 83
           V AKS + ++  + HES S +DVF PTPGH PTTN EA P  RSP +QSSIQVD SVTNQ
Sbjct: 82  VLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQ 141

Query: 84  RLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHVGPTDTCATNTVELDVNDELQS 143
             V +HNP+D+ST+ VGRNDV VV+SP AA S A +EHV PTDTCATNTVELDVNDELQ 
Sbjct: 142 SSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQL 201

Query: 144 ETQQSSGVSRPNGKKV 160
           ETQQS GVSRP GKKV
Sbjct: 202 ETQQSPGVSRPKGKKV 217

BLAST of IVF0026192 vs. ExPASy TrEMBL
Match: A0A5A7U645 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00870 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 94/156 (60.26%), Postives = 108/156 (69.23%), Query Frame = 0

Query: 5   ERDDV--PLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEAS 64
           E DDV   LAR LKKGLF  VVP KS D   STH HES  ++D+FVPTPGH   TNE A 
Sbjct: 5   EHDDVMPELARFLKKGLFFKVVPTKSVDPVTSTHSHESSFTEDIFVPTPGHSLVTNEGAR 64

Query: 65  PLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHV 124
              RSP ++SSIQV+ SV +QRLVPE NPVD+STK VGRNDV V +SP       TD HV
Sbjct: 65  QSRRSPSIKSSIQVNASVIDQRLVPEPNPVDDSTKNVGRNDVSVDESP------TTDAHV 124

Query: 125 GPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 159
            P +TC T+T+E DVN++ Q ETQ   GVSRP GKK
Sbjct: 125 EPINTCTTDTIEPDVNNDFQLETQHPLGVSRPKGKK 154

BLAST of IVF0026192 vs. NCBI nr
Match: KAA0048750.1 (uncharacterized protein E6C27_scaffold43G00540 [Cucumis melo var. makuwa] >TYK31585.1 uncharacterized protein E5676_scaffold172G00840 [Cucumis melo var. makuwa])

HSP 1 Score: 315 bits (807), Expect = 6.74e-107
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query: 1   MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
           MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE
Sbjct: 92  MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 151

Query: 61  ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
           ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE
Sbjct: 152 ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 211

Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 159
           HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV
Sbjct: 212 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKKV 250

BLAST of IVF0026192 vs. NCBI nr
Match: TYK29294.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (503), Expect = 2.49e-56
Identity = 107/158 (67.72%), Postives = 122/158 (77.22%), Query Frame = 0

Query: 1   MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
           MD +ERDDVPLARLLKKGLFSNVVPAKS D   STH HES S KD+FVPTP H PTTNE 
Sbjct: 382 MDFNERDDVPLARLLKKGLFSNVVPAKSVDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 441

Query: 61  ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
           A     SPLV+SSIQVD S+T+ RLVP+ NP+D++T+ VGRNDVPV +S +       D 
Sbjct: 442 AGQSGPSPLVKSSIQVDASITDHRLVPDSNPIDKTTENVGRNDVPVDESIII------DA 501

Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 158
           HV  T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 502 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 533

BLAST of IVF0026192 vs. NCBI nr
Match: KAA0065524.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (505), Expect = 3.02e-56
Identity = 108/158 (68.35%), Postives = 122/158 (77.22%), Query Frame = 0

Query: 1   MDSDERDDVPLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEE 60
           MD +ERDDVPLARLLKKGLFSNVVPAKS D   STH HES S KD+FVPTP H PTTNE 
Sbjct: 461 MDFNERDDVPLARLLKKGLFSNVVPAKSIDPITSTHSHESSSYKDIFVPTPSHSPTTNEG 520

Query: 61  ASPLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDE 120
           A     SPLV+SSIQVD SVT+ RLVP+ NP+D++T+ VGRNDVPV +S +       D 
Sbjct: 521 AGQSGPSPLVKSSIQVDASVTDHRLVPDSNPIDKTTENVGRNDVPVDESIII------DA 580

Query: 121 HVGPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 158
           HV  T+TCAT+T+E DVNDELQ ETQQS GVSRP GKK
Sbjct: 581 HVESTNTCATDTIEPDVNDELQPETQQSPGVSRPKGKK 612

BLAST of IVF0026192 vs. NCBI nr
Match: KAA0036773.1 (uncharacterized protein E6C27_scaffold20G00570 [Cucumis melo var. makuwa] >TYJ95841.1 uncharacterized protein E5676_scaffold110G001300 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (454), Expect = 1.07e-53
Identity = 95/136 (69.85%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 24  VPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEASPLHRSPLVQSSIQVDGSVTNQ 83
           V AKS + ++  + HES S +DVF PTPGH PTTN EA P  RSP +QSSIQVD SVTNQ
Sbjct: 82  VLAKSVNPNIFIYSHESSSFEDVFAPTPGHPPTTNVEAGPSRRSPPIQSSIQVDASVTNQ 141

Query: 84  RLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHVGPTDTCATNTVELDVNDELQS 143
             V +HNP+D+ST+ VGRNDV VV+SP AA S A +EHV PTDTCATNTVELDVNDELQ 
Sbjct: 142 SSVSKHNPIDKSTENVGRNDVHVVESPAAAESPAANEHVDPTDTCATNTVELDVNDELQL 201

Query: 144 ETQQSSGVSRPNGKKV 159
           ETQQS GVSRP GKKV
Sbjct: 202 ETQQSPGVSRPKGKKV 217

BLAST of IVF0026192 vs. NCBI nr
Match: KAA0051363.1 (uncharacterized protein E6C27_scaffold55G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 165 bits (417), Expect = 3.75e-46
Identity = 94/156 (60.26%), Postives = 108/156 (69.23%), Query Frame = 0

Query: 5   ERDDV--PLARLLKKGLFSNVVPAKSFDLDMSTHPHESFSSKDVFVPTPGHLPTTNEEAS 64
           E DDV   LAR LKKGLF  VVP KS D   STH HES  ++D+FVPTPGH   TNE A 
Sbjct: 5   EHDDVMPELARFLKKGLFFKVVPTKSVDPVTSTHSHESSFTEDIFVPTPGHSLVTNEGAR 64

Query: 65  PLHRSPLVQSSIQVDGSVTNQRLVPEHNPVDESTKIVGRNDVPVVKSPVAARSHATDEHV 124
              RSP ++SSIQV+ SV +QRLVPE NPVD+STK VGRNDV V +SP       TD HV
Sbjct: 65  QSRRSPSIKSSIQVNASVIDQRLVPEPNPVDDSTKNVGRNDVSVDESPT------TDAHV 124

Query: 125 GPTDTCATNTVELDVNDELQSETQQSSGVSRPNGKK 158
            P +TC T+T+E DVN++ Q ETQ   GVSRP GKK
Sbjct: 125 EPINTCTTDTIEPDVNNDFQLETQHPLGVSRPKGKK 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E8I41.0e-82100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VE221.0e-4768.35Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G0027... [more]
A0A5D3E0G71.8e-4767.72Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G006... [more]
A0A5A7T1I31.5e-4169.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U6451.3e-3760.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0048750.16.74e-107100.00uncharacterized protein E6C27_scaffold43G00540 [Cucumis melo var. makuwa] >TYK31... [more]
TYK29294.12.49e-5667.72gag/pol protein [Cucumis melo var. makuwa][more]
KAA0065524.13.02e-5668.35gag/pol protein [Cucumis melo var. makuwa][more]
KAA0036773.11.07e-5369.85uncharacterized protein E6C27_scaffold20G00570 [Cucumis melo var. makuwa] >TYJ95... [more]
KAA0051363.13.75e-4660.26uncharacterized protein E6C27_scaffold55G00870 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026192.1IVF0026192.1mRNA