IVF0026189 (gene) Melon (IVF77) v1

Overview


Name	IVF0026189
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 2246793 .. 2247042 (+)
RNA-Seq Expression	IVF0026189
Synteny	IVF0026189

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGAATTATGATACAATTGAAGCATGAGAATGAATTGAGATGAATGGTGGTACATTACGTATCTCCACATCCTCCACACGGTCTCGCAACCCATCTCCTTCCAATGCTCTAAGAACATCAGACTTGTCATCCTCAGTGACATCAACCACACCCTTTGGTTTCGAGTATCCAGTTCATCCATTTGGATCTCCACCACCTTTGCTCTTCTCAAGACTTTCGCAGTTTCATCAGTGTCCCCTTTTGTTCTAA

mRNA sequence

ACAGAATTATGATACAATTGAAGCATGAGAATGAATTGAGATGAATGGTGGTACATTACGTATCTCCACATCCTCCACACGGTCTCGCAACCCATCTCCTTCCAATGCTCTAAGAACATCAGACTTGTCATCCTCAGTGACATCAACCACACCCTTTGGTTTCGAGTATCCAGTTCATCCATTTGGATCTCCACCACCTTTGCTCTTCTCAAGACTTTCGCAGTTTCATCAGTGTCCCCTTTTGTTCTAA

Coding sequence (CDS)

ATGAATGGTGGTACATTACGTATCTCCACATCCTCCACACGGTCTCGCAACCCATCTCCTTCCAATGCTCTAAGAACATCAGACTTGTCATCCTCAGTGACATCAACCACACCCTTTGGTTTCGAGTATCCAGTTCATCCATTTGGATCTCCACCACCTTTGCTCTTCTCAAGACTTTCGCAGTTTCATCAGTGTCCCCTTTTGTTCTAA

Protein sequence

MNGGTLRISTSSTRSRNPSPSNALRTSDLSSSVTSTTPFGFEYPVHPFGSPPPLLFSRLSQFHQCPLLF

Homology

[Close]

BLAST of IVF0026189 vs. ExPASy TrEMBL
Match: A0A0A0KHY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516710 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.3e-18
Identity = 55/70 (78.57%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MNGGTLRISTSSTRSRNPSPSNALRTSDLSSSVTSTTP-FGFEYPVHPFGSPPPLLFSRL 60
          M+ GTLRISTSST SR  SPSNALRTSDLSSSVTSTT     EYPVHPFGSP PLLFS+L
Sbjct: 1  MSDGTLRISTSSTGSRKSSPSNALRTSDLSSSVTSTTHLLVLEYPVHPFGSPAPLLFSKL 60

Query: 61 SQFHQCPLLF 70
           Q HQCPL F
Sbjct: 61 PQLHQCPLFF 70

The following BLAST results are available for this feature:

BLAST of IVF0026189 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHY6	8.3e-18	78.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516710 PE=4 SV=1	[more]

BLAST of IVF0026189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of IVF0026189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026189.1	IVF0026189.1	mRNA