IVF0026184 (gene) Melon (IVF77) v1

Overview


Name	IVF0026184
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 22577398 .. 22577653 (+)
RNA-Seq Expression	IVF0026184
Synteny	IVF0026184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCTCGCCGGCGGTGGATGGCCCCGGCGGTGGTAGGACTATAGCATCGGGGGCAGAAGGGGGGTTTAGCGGCGGAAATTTATTAGTGTGATAGAGTTGAGGAAGAGAAGGGATTTGTGAAGGCGAGGCGGTGGAGTGGAGATTATCGAGAGGAAGATTTGCTGAAGGATTCGAGAATTGGGATATGGGATTGGTTGTCGGAGCCGGTGCCGGAGATGGCGGTGATTATAGAAGAAAGTGAAGTACAGTAG

mRNA sequence

ATGGAACCCTCGCCGGCGGTGGATGGCCCCGGCGGTGGTAGGACTATAGCATCGGGGGCAGAAGGGGGGTTTAGCGGCGGAAATTTATTAGATTCGAGAATTGGGATATGGGATTGGTTGTCGGAGCCGGTGCCGGAGATGGCGGTGATTATAGAAGAAAGTGAAGTACAGTAG

Coding sequence (CDS)

ATGGAACCCTCGCCGGCGGTGGATGGCCCCGGCGGTGGTAGGACTATAGCATCGGGGGCAGAAGGGGGGTTTAGCGGCGGAAATTTATTAGATTCGAGAATTGGGATATGGGATTGGTTGTCGGAGCCGGTGCCGGAGATGGCGGTGATTATAGAAGAAAGTGAAGTACAGTAG

Protein sequence

MEPSPAVDGPGGGRTIASGAEGGFSGGNLLDSRIGIWDWLSEPVPEMAVIIEESEVQ

Homology

[Close]

BLAST of IVF0026184 vs. ExPASy TrEMBL
Match: A0A0A0L9B8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653420 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.1e-21
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MEPSPAVDGPGGGRTIASGAEGGFSGGNLLDSRIGIWDWLSEPVPEMAVIIEESEVQ 58
          MEPSPAVDGPGGGR IASGAEGGFSGGNL D+R GIWDWLSEPVPEMAVIIEESEVQ
Sbjct: 1  MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ 57

[Close]

BLAST of IVF0026184 vs. NCBI nr
Match: KGN58510.1 (hypothetical protein Csa_001074 [Cucumis sativus])

HSP 1 Score: 110 bits (275), Expect = 2.48e-30
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  MEPSPAVDGPGGGRTIASGAEGGFSGGNLLDSRIGIWDWLSEPVPEMAVIIEESEVQ 57
          MEPSPAVDGPGGGR IASGAEGGFSGGNL D+R GIWDWLSEPVPEMAVIIEESEVQ
Sbjct: 1  MEPSPAVDGPGGGRAIASGAEGGFSGGNLEDARFGIWDWLSEPVPEMAVIIEESEVQ 57

The following BLAST results are available for this feature:

BLAST of IVF0026184 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9B8	5.1e-21	92.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G653420 PE=4 SV=1	[more]

BLAST of IVF0026184 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58510.1	2.48e-30	92.98	hypothetical protein Csa_001074 [Cucumis sativus]	[more]

BLAST of IVF0026184 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026184.1	IVF0026184.1	mRNA