IVF0026108 (gene) Melon (IVF77) v1

Overview


Name	IVF0026108
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA binding protein, putative
Location	chr04: 29676431 .. 29679708 (-)
RNA-Seq Expression	IVF0026108
Synteny	IVF0026108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAATGTACGTCCGCCGTTCTTTCCCCCGCTCTCTCGACTCGGAAATGGACGCATAGCATCACTCTGATACTACTACCATGGAGGCGATCAGAAAAGCGATAGCAATATCCTCCAACCGTCGTGTTCTTCCCTCTCTATTTCCTCCCCCGTCTCGGCTCGTCTCTTTTAGAGGCATAGCTACGAAGCTTTTTGTTGGTGGTAAACTCAAAATTCCTCCTCTCTACTAACTACTCTGTTCATTTTCCAATTCATCGTATCTACTTACCGTTTCAATCTAAGTTTTAGAATTGAATTAGACTTTTTGTTGCGTTTTTTCTATGCTGATTAACTGTGTATTTATATTCTAAGGTGTCTGCGACGACCGTACGTTAAGTTTCGGAAAGTATAAACTTCGTTTTAATCTTACAAGTGAAAGTACGACTGTCTTAATGTGAGCTAGTGAGTTAATTTACTTCAGGAAACCACGATCGTGGAAAATTCTGGAAAATTCTTGATTGTAAAGGATAAGCATCTGGTGGATTTGCATACTTTCTCCTAATGTTGATGTCAAAGTTCAAAATGACGGATCAATTTGAAAGGAATGTTTAGGATTTCTGCAACGTTTCATTCTTAATCTTAGCTCGTATTTACTTATGGAGAGACAAAAAGTAGCAGAACCAATTAACCTCCTGAGTAGCTTCATCATCCCCTAGGAGTGAAGTGTGGCATGTCTTCAATGCTTTTATTCAAATAGTTACTTCCTAACTATCTTTATGTACGTCTTTATCATTTTCTTTAGCAATTATGCCGAATCTGAAAAGCGACTTGCTGTAGTACATACAGCATCCATGATCATTTTAAAGCCATCTTTGAATTCGAATTTGTGTTAGGACCTTAGGCGGGGTTTCCACATCCTTACCTGAATAAGATCTTTTACTTAGGTTGAACAACTATGCCTACGAGTTTCAAAGGTAGCTTTCCAGAGGCAATAGGCTTCTTCAGCGGGTTTTGAAGGAATGGTCTTTTCCCTGATGTCTTCCTAGTGAATCTTTGCTTGTGCTCTGGCCCTAAAGTATCTGGTAAGGTAATGAACATTAGGAAAGTGGATGGAGGGACTTGAGAGAGTAGGCATTTTTTGGAAGAGAGTAAAATAATTATGGAATTTTACGATAGTGAACTTGGAATTTTCTGGTTCTTGATGTCTAAGAGGGGTTCTAAGGATGCTGTGGGTTCTTGAGGAGCAAGGCTTTGACCCATTTTAATGATTCTATCTAGGGATTTATAATTTTTTTTTACCTTTCATTCTTAAATTTTTTTTTAATTTGTAATTTTCTCTCTCGGGTTCTAATATTATTGGCTCTTCATTTGGGCTTGTGTTTTTGTACGATCCTTAGTTTTGTTATTTCATTTAACCTGATGGAAATTGCTTATTCTGGGATAAACTTAAGACAGTGGTGGATTCGTCGAGGGCAATGGTCCATTTGCTAAGAGCCTTTTGTTTTCTGGTCCTGAAAATGGAAGAGAACATGTATTGAAAGCTTTAGTATTCACATTCTTGCGTCAGAGAATGTGCTTCCTATCAAATAAAACGTTATTGGGTGGTTATAGACATTTCCCCACTAAGATACCTCTTTCTAGTTTGCTACAATTTCTTCATAAACTATCGTGGCTTGTTTCCTTATTCCACGTGCCCGAACTCCCTAAATCCTTCTGCAATTGAATTGGAAAACCTACTTCGCTTGCCATTTCTCGTTGTACGTGATCACGGACACATCAACTTATTCTGTAACAGGGTTGTGAATTTTGAGAAACTGAGCCAATATTTTTCCCACTTTCATTGTTAACCTTTGATCTCAAGTATCTATGCATTTCTGGAAGATTTTTGCATGTCACATTAATTAATAGAATTGTTTACTATTCTCGAAAAAGTACAGAATCATTTGTCTACGAAAATTCTCTTCAGATTTTTGCTCTTGATTTTGTCAGTCAATTCATAGGACAATACCTTATTCCATATTGGAAACCCTCTTTCTGGAATATTCTGCAACAGGACTCTCATATTACACTACGGACAAAGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTATTGAAGGTGACTTCCATTGACATACTTTAGCTTTCATGTCTAACCATGGCAATTTAGTTTCATGGAGCATAACACAATCTTTTCAACTCCAGCTACAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTTGTCACCTTTGCATCCATAGACGAAGCGCACACGGCACTATCAGAGATGAACGGAAAGGTCTGCAAGTTTCTCTATCATGCCTACTACACTTTAAGAAATTAAGTCTAATGGTTGTTTCCTGCAGCCTTTGAACGGAAGGGTTATTTTTGTGAACTATGCAAAGCCAACAACCTCTACTCGTGGTTCAATTCCTATAGCGAGAGGACCTCCCGAGGAGAAAACTGATAAATGATTGCTAAAAAAAATTGTCTATCATTTATCAAAAAGAAATTAGCTGAAAAGAAGAGAACAATCATTGAAGCTGCGCGTAGAAAGTGTGATTCAAACGTGTCTTTTCAAGAATTTGCTTCATGTCAGAGACATGTTTAAAGCTTCGGGAAAAAGAGGTCAGCTTGCTGGAATTTTTAAAAATATTCTTGATTTTCTTATTGGTTAAGTAGTGCTCTGTTAAGTATGGTTAAACTGATGTCCAGACATCTGTCCATATATTTTCTCAGTTTGCTGATTGCCATATTGTGATAATAATATTTCTTTTTGCAGCAATTAGTCTCACGGTTTAGAATAAGGTATAAGTCTGATTTTTATTTTCAATTTTATTCTATTTCGGTGACTTATCTTTAATACTTCTTGAACTTAAAAGATAGAGAACATTTCGGTCCTTCTATTTATTACTTTCGCCTAATGTCTACTACTTTGTGTCTTTATTCAGCATGTGTAGTGGTAATGCATCCTCACATCAACACTTTAATACACATATTCAAAATTATTATTCAATTAAAAAACTGAATAGAAACTTTGAAAGTTTAGAGATTTTATTAGAACTTAGAAAGTTTGGGAAGCTGAGTTTAGGAATTAAAGCCTTTAGATTAGGAAATTTTCCTTTCGAATAGTCCATATTCCATTTCCATGTGACTTCACATGAGCTTGATGGGATGGAAAAGATAATGTCACTAATTACTCACGCAATCGCTGAGGAAAGGCGAGAGTTGCTAGCTATCACATGTAGTTGTGAGAGATAAGACTTAGGTTAGTTTAAGGGAG

mRNA sequence

CTAAAATGTACGTCCGCCGTTCTTTCCCCCGCTCTCTCGACTCGGAAATGGACGCATAGCATCACTCTGATACTACTACCATGGAGGCGATCAGAAAAGCGATAGCAATATCCTCCAACCGTCGTGTTCTTCCCTCTCTATTTCCTCCCCCGTCTCGGCTCGTCTCTTTTAGAGGCATAGCTACGAAGCTTTTTGTTGGTGGACTCTCATATTACACTACGGACAAAGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTATTGAAGCTACAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTTGTCACCTTTGCATCCATAGACGAAGCGCACACGGCACTATCAGAGATGAACGGAAAGCCTTTGAACGGAAGGGTTATTTTTGTGAACTATGCAAAGCCAACAACCTCTACTCGTGGTTCAATTCCTATAGCGAGAGGACCTCCCGAGGAGAAAACTGATAAATGATTGCTAAAAAAAATTGTCTATCATTTATCAAAAAGAAATTAGCTGAAAAGAAGAGAACAATCATTGAAGCTGCGCGTAGAAAGTGTGATTCAAACGTGTCTTTTCAAGAATTTGCTTCATGTCAGAGACATGTTTAAAGCTTCGGGAAAAAGAGGTCAGCTTGCTGGAATTTTTAAAAATATTCTTGATTTTCTTATTGGTTAAGTAGTGCTCTGTTAAGTATGGTTAAACTGATGTCCAGACATCTGTCCATATATTTTCTCAGTTTGCTGATTGCCATATTGTGATAATAATATTTCTTTTTGCAGCAATTAGTCTCACGGTTTAGAATAAGGTATAAGTCTGATTTTTATTTTCAATTTTATTCTATTTCGGTGACTTATCTTTAATACTTCTTGAACTTAAAAGATAGAGAACATTTCGGTCCTTCTATTTATTACTTTCGCCTAATGTCTACTACTTTGTGTCTTTATTCAGCATGTGTAGTGGTAATGCATCCTCACATCAACACTTTAATACACATATTCAAAATTATTATTCAATTAAAAAACTGAATAGAAACTTTGAAAGTTTAGAGATTTTATTAGAACTTAGAAAGTTTGGGAAGCTGAGTTTAGGAATTAAAGCCTTTAGATTAGGAAATTTTCCTTTCGAATAGTCCATATTCCATTTCCATGTGACTTCACATGAGCTTGATGGGATGGAAAAGATAATGTCACTAATTACTCACGCAATCGCTGAGGAAAGGCGAGAGTTGCTAGCTATCACATGTAGTTGTGAGAGATAAGACTTAGGTTAGTTTAAGGGAG

Coding sequence (CDS)

ATGGAGGCGATCAGAAAAGCGATAGCAATATCCTCCAACCGTCGTGTTCTTCCCTCTCTATTTCCTCCCCCGTCTCGGCTCGTCTCTTTTAGAGGCATAGCTACGAAGCTTTTTGTTGGTGGACTCTCATATTACACTACGGACAAAGGACTGTCAGAAGCCTTTTCCCAATACGGTCAGGTTATTGAAGCTACAGTTGTGATGGACAGAGTCTCTGATAAGTCAAAGGGATTCGGATTTGTCACCTTTGCATCCATAGACGAAGCGCACACGGCACTATCAGAGATGAACGGAAAGCCTTTGAACGGAAGGGTTATTTTTGTGAACTATGCAAAGCCAACAACCTCTACTCGTGGTTCAATTCCTATAGCGAGAGGACCTCCCGAGGAGAAAACTGATAAATGA

Protein sequence

MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGSIPIARGPPEEKTDK

Homology

[Close]

BLAST of IVF0026108 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.5e-32
Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 31  RGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASIDEAH 90
           RG+A+KLF+GGLS+ TT++GLSEAFS+ GQV+EA +VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALSEMNGKPLNGRVIFVNYAKPTTST--RGSIPIARGPPE 130
            AL E NG+ LNGR IFV+YAK   S    G  PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of IVF0026108 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-20
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 4   IRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIE 63
           +R+ ++ SSN        P  S L S R +++KLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNG-------PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  ATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTS 117
           ATV+ DR + +S+GFGFV+F+  D A+ A+ EM+GK LNGR I VN A   +S
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSS 116

[Close]

BLAST of IVF0026108 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 10  ISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMD 69
           ISSN  V     P  S L S R ++TKLF+GGLS+ T D  L +AF+ +G V++A V++D
Sbjct: 15  ISSNGNV-----PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD 74

Query: 70  RVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGSIPIARG 127
           R + +S+GFGFV F     A  A+SEM+GK LNGR I VN A    + R S P A G
Sbjct: 75  RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA----NDRPSAPRAYG 122

[Close]

BLAST of IVF0026108 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-17
Identity = 39/86 (45.35%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 34  ATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASIDEAHTAL 93
           ++KLF+GG++Y   +  L EAF++YG+V++  V++DR + +S+GFGFVTF S + A +A+
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 94  SEMNGKPLNGRVIFVNYAKPTTSTRG 120
             ++G+ L+GRV+ VNYA   TS  G
Sbjct: 99  QALDGRDLHGRVVKVNYANDRTSGGG 124

[Close]

BLAST of IVF0026108 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-17
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 36  KLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSE 95
           KLFVGGLS+ T ++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF +ID+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKPLNGRVIFVNYAKPTTSTR 119
           MNGK ++GR I V+ A  ++  R
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNR 89

[Close]

BLAST of IVF0026108 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of IVF0026108 vs. ExPASy TrEMBL
Match: A0A1S3B7I3 (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of IVF0026108 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 128/134 (95.52%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKA+AI+SNRRVLPSLFPPPSRLVS+RGIATKLFVGGLSYYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           VIEATVVMDRVSDKSKGFGFVTFAS+DEAHTALSEMNGKPLNGRVIFVNYAKPTTS+RG+
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of IVF0026108 vs. ExPASy TrEMBL
Match: A0A1S4DUE5 (glycine-rich RNA-binding protein 4, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.9e-65
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           VIE  VVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS
Sbjct: 61  VIE--VVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 132

[Close]

BLAST of IVF0026108 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.3e-56
Identity = 114/134 (85.07%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           M AIRKA+AISSNR VLPS+F PPSRL+SFRGIA+KLFVGGLS+YT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPT++ RG 
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDK 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of IVF0026108 vs. NCBI nr
Match: XP_008442872.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis melo] >KAA0043854.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25281.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (676), Expect = 4.18e-89
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDK 134
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of IVF0026108 vs. NCBI nr
Match: XP_004149190.1 (small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KGN59159.1 hypothetical protein Csa_002166 [Cucumis sativus])

HSP 1 Score: 258 bits (658), Expect = 2.33e-86
Identity = 128/134 (95.52%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKA+AI+SNRRVLPSLFPPPSRLVS+RGIATKLFVGGLSYYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           VIEATVVMDRVSDKSKGFGFVTFAS+DEAHTALSEMNGKPLNGRVIFVNYAKPTTS+RG+
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTDK 134
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of IVF0026108 vs. NCBI nr
Match: XP_016899606.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 256 bits (654), Expect = 8.87e-86
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           VIE  VVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS
Sbjct: 61  VIE--VVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDK 134
           IPIARGPPEEKTDK
Sbjct: 121 IPIARGPPEEKTDK 132

[Close]

BLAST of IVF0026108 vs. NCBI nr
Match: XP_038903502.1 (small RNA-binding protein 11, chloroplastic [Benincasa hispida])

HSP 1 Score: 231 bits (588), Expect = 1.10e-75
Identity = 117/134 (87.31%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           MEAIRKA+AISSNR VLPSLF  PSRLVSFRGIA+KLFVGGLS+YTTDKGLSEAFSQYGQ
Sbjct: 1   MEAIRKAMAISSNRCVLPSLFTLPSRLVSFRGIASKLFVGGLSFYTTDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGKPLNGRVIFV+YAKPT+  R  
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKPLNGRVIFVDYAKPTSKFRSG 120

Query: 121 IPIARGPPEEKTDK 134
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of IVF0026108 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 229 bits (583), Expect = 6.37e-75
Identity = 114/134 (85.07%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60
           M AIRKA+AISSNR VLPS+F PPSRL+SFRGIA+KLFVGGLS+YT+DKGLSEAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPT++ RG 
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDK 134
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of IVF0026108 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 138.3 bits (347), Expect = 4.6e-33
Identity = 69/101 (68.32%), Postives = 82/101 (81.19%), Query Frame = 0


Query: 31  RGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASIDEAH 90
           RG+A+KLF+GGLS+ TT++GLSEAFS+ GQV+EA +VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALSEMNGKPLNGRVIFVNYAKPTTST--RGSIPIARGPPE 130
            AL E NG+ LNGR IFV+YAK   S    G  PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of IVF0026108 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-21
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 4   IRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIE 63
           +R+ ++ SSN        P  S L S R +++KLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNG-------PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  ATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTS 117
           ATV+ DR + +S+GFGFV+F+  D A+ A+ EM+GK LNGR I VN A   +S
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSS 116

[Close]

BLAST of IVF0026108 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-21
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 4   IRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIE 63
           +R+ ++ SSN        P  S L S R +++KLFVGGLS+ T D  L +AF+ +G+V E
Sbjct: 11  LRQGVSQSSNG-------PVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTE 70

Query: 64  ATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTS 117
           ATV+ DR + +S+GFGFV+F+  D A+ A+ EM+GK LNGR I VN A   +S
Sbjct: 71  ATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSS 116

[Close]

BLAST of IVF0026108 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 10  ISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMD 69
           ISSN  V     P  S L S R ++TKLF+GGLS+ T D  L +AF+ +G V++A V++D
Sbjct: 15  ISSNGNV-----PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD 74

Query: 70  RVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGSIPIARG 127
           R + +S+GFGFV F     A  A+SEM+GK LNGR I VN A    + R S P A G
Sbjct: 75  RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA----NDRPSAPRAYG 122

[Close]

BLAST of IVF0026108 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 0


Query: 10  ISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMD 69
           ISSN  V     P  S L S R ++TKLF+GGLS+ T D  L +AF+ +G V++A V++D
Sbjct: 15  ISSNGNV-----PVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVD 74

Query: 70  RVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGSIPIARG 127
           R + +S+GFGFV F     A  A+SEM+GK LNGR I VN A    + R S P A G
Sbjct: 75  RETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA----NDRPSAPRAYG 122

The following BLAST results are available for this feature:

BLAST of IVF0026108 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	6.5e-32	68.32	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9LIS2	5.7e-20	46.90	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	2.4e-18	47.86	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FNR1	2.0e-17	45.35	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
P60826	5.9e-17	50.60	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]

BLAST of IVF0026108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKK4	2.2e-67	100.00	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B7I3	2.2e-67	100.00	glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]
A0A0A0LE31	2.7e-65	95.52	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV...	[more]
A0A1S4DUE5	7.9e-65	98.51	glycine-rich RNA-binding protein 4, mitochondrial isoform X2 OS=Cucumis melo OX=...	[more]
A0A6J1KYF3	1.3e-56	85.07	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of IVF0026108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442872.1	4.18e-89	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X1 [Cucumis...	[more]
XP_004149190.1	2.33e-86	95.52	small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KGN59159.1 hypoth...	[more]
XP_016899606.1	8.87e-86	98.51	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial isoform X2 [Cucumis...	[more]
XP_038903502.1	1.10e-75	87.31	small RNA-binding protein 11, chloroplastic [Benincasa hispida]	[more]
XP_023005174.1	6.37e-75	85.07	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of IVF0026108 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06210.1	4.6e-33	68.32	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	4.0e-21	46.90	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	4.0e-21	46.90	glycine-rich RNA-binding protein 4	[more]
AT4G13850.1	1.7e-19	47.86	glycine-rich RNA-binding protein 2	[more]
AT4G13850.2	1.7e-19	47.86	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 36..109 e-value: 4.4E-27 score: 106.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 37..106 e-value: 1.4E-21 score: 76.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 35..113 score: 20.43993
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 31..132 e-value: 3.4E-29 score: 103.7
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..133
None	No IPR available	PANTHER	PTHR15241:SF335	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 1..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 35..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026108.2	IVF0026108.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901002	positive regulation of response to salt stress
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding