IVF0026098 (gene) Melon (IVF77) v1

Overview


Name	IVF0026098
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 2952517 .. 2952762 (-)
RNA-Seq Expression	IVF0026098
Synteny	IVF0026098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAATAATGGAAATAAGAGACAAGAAAAGAACAACAACAATAGCAATAGCAATAATTCATCATGGTCGCCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACCCAGATCGACAATGTCCTCCATGGCCCCAAAACGACTACTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA

mRNA sequence

ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAATAATGGAAATAAGAGACAAGAAAAGAACAACAACAATAGCAATAGCAATAATTCATCATGGTCGCCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACCCAGATCGACAATGTCCTCCATGGCCCCAAAACGACTACTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Coding sequence (CDS)

ATGGATCAGAAGAGATATTACAGAGTGGTGAATAACAAGAATAATGGAAATAAGAGACAAGAAAAGAACAACAACAATAGCAATAGCAATAATTCATCATGGTCGCCAATTTCAGATCTCAAATTACCACAACAACTAGCAAATGGAGATCAAGATGTTCAAACCCAGATCGACAATGTCCTCCATGGCCCCAAAACGACTACTCGTTTGCTGGTATTCAAACAAATTTGCCCTGATCAAAATTGA

Protein sequence

MDQKRYYRVVNNKNNGNKRQEKNNNNSNSNNSSWSPISDLKLPQQLANGDQDVQTQIDNVLHGPKTTTRLLVFKQICPDQN

Homology

[Close]

BLAST of IVF0026098 vs. ExPASy TrEMBL
Match: A0A0A0KHZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDQKRYYRVVNNKNNG-NKRQEKNNNNSNSNNSSWSPISDLKLPQQLANGDQDVQTQIDN 60
          MDQKRYYRVVNNKNNG NK+QEKNNNN+NS NSSWSPISDLKLPQQLANGDQDVQTQIDN
Sbjct: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNS-NSSWSPISDLKLPQQLANGDQDVQTQIDN 60

Query: 61 VLHGPKTTTRLLVFKQICPDQN 82
          VLHGPKTT RLLVFKQICPDQN
Sbjct: 61 VLHGPKTTARLLVFKQICPDQN 81

[Close]

BLAST of IVF0026098 vs. NCBI nr
Match: KGN48424.1 (hypothetical protein Csa_003981 [Cucumis sativus])

HSP 1 Score: 143 bits (361), Expect = 9.84e-43
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDQKRYYRVVNNKNNG-NKRQEKNNNNSNSNNSSWSPISDLKLPQQLANGDQDVQTQIDN 60
          MDQKRYYRVVNNKNNG NK+QEKNNNN+NSN SSWSPISDLKLPQQLANGDQDVQTQIDN
Sbjct: 1  MDQKRYYRVVNNKNNGINKKQEKNNNNNNSN-SSWSPISDLKLPQQLANGDQDVQTQIDN 60

Query: 61 VLHGPKTTTRLLVFKQICPDQN 81
          VLHGPKTT RLLVFKQICPDQN
Sbjct: 61 VLHGPKTTARLLVFKQICPDQN 81

The following BLAST results are available for this feature:

BLAST of IVF0026098 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHZ5	2.0e-31	93.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1	[more]

BLAST of IVF0026098 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48424.1	9.84e-43	93.90	hypothetical protein Csa_003981 [Cucumis sativus]	[more]

BLAST of IVF0026098 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026098.2	IVF0026098.2	mRNA