IVF0026074 (gene) Melon (IVF77) v1

Overview
NameIVF0026074
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr04: 15607270 .. 15607473 (-)
RNA-Seq ExpressionIVF0026074
SyntenyIVF0026074
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTATTGTCTACTCCATGATTTAATAAATCTTGAGATGACGAATGCTGACATATTGGACGACAAAGATAAGGGTGACTCGACATACACAACTACTAGCGATGACAACATCAACTACATTGAGGCCTCAAACAAATGGACTCAATGGAGAGATGCCCTTGCGGAATTGATGTTCAACGAATGGCAGTTGCCTAATGATTAG

mRNA sequence

ATGACTTATTGTCTACTCCATGATTTAATAAATCTTGAGATGACGAATGCTGACATATTGGACGACAAAGATAAGGGTGACTCGACATACACAACTACTAGCGATGACAACATCAACTACATTGAGGCCTCAAACAAATGGACTCAATGGAGAGATGCCCTTGCGGAATTGATGTTCAACGAATGGCAGTTGCCTAATGATTAG

Coding sequence (CDS)

ATGACTTATTGTCTACTCCATGATTTAATAAATCTTGAGATGACGAATGCTGACATATTGGACGACAAAGATAAGGGTGACTCGACATACACAACTACTAGCGATGACAACATCAACTACATTGAGGCCTCAAACAAATGGACTCAATGGAGAGATGCCCTTGCGGAATTGATGTTCAACGAATGGCAGTTGCCTAATGATTAG

Protein sequence

MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFNEWQLPND
Homology
BLAST of IVF0026074 vs. ExPASy TrEMBL
Match: A0A5D3BZZ3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002080 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 3  YCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFNE 62
          Y LLH+LIN EMTNADILDD+DKGDST+TTTS +NI YIE SN+WTQWRDALAE M NE
Sbjct: 18 YSLLHNLINWEMTNADILDDEDKGDSTHTTTSGENITYIEVSNEWTQWRDALAESMLNE 76

BLAST of IVF0026074 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.8e-17
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFN 60
           M  CLLH+LIN EMTN++I+DD D+GDSTY TT  D INYIEASN+W++WRD LA  MF+
Sbjct: 258 MACCLLHNLINREMTNSEIIDDLDEGDSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 317

Query: 61  EWQL 65
           +W+L
Sbjct: 318 DWEL 321

BLAST of IVF0026074 vs. ExPASy TrEMBL
Match: A0A5A7V6M3 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00030 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-16
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFN 60
           M  CLLH+LIN EMTN++I+DD D+ DSTY TT  D INYIEASN+W++WRD LA  MF+
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  EWQL 65
           +W+L
Sbjct: 240 DWEL 243

BLAST of IVF0026074 vs. ExPASy TrEMBL
Match: A0A5D3CHV9 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00220 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.8e-16
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFN 60
           M  CLLH+LIN EMTN++I D+ D+ DSTYTTT  D INYIEASN+W++WRD LA  MF+
Sbjct: 130 MVCCLLHNLINREMTNSEITDNLDEDDSTYTTTGGDEINYIEASNEWSEWRDQLAHTMFS 189

Query: 61  EWQL 65
           +W+L
Sbjct: 190 DWEL 193

BLAST of IVF0026074 vs. ExPASy TrEMBL
Match: A0A5D3BQ11 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00510 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFN 60
           +T CLLH+LIN EMTN DILDD D+ DST+ TT+ D+I+YIE  N+WTQWRD LA+ MF+
Sbjct: 155 LTCCLLHNLINREMTNFDILDDIDEVDSTHVTTAGDDIHYIETFNEWTQWRDELADEMFS 214

Query: 61  EWQLPN 67
           +W+L N
Sbjct: 215 DWELRN 220

BLAST of IVF0026074 vs. NCBI nr
Match: XP_031742024.1 (uncharacterized protein LOC105435527 [Cucumis sativus] >KAE8648564.1 hypothetical protein Csa_009116 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 3.78e-24
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDD-KDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMF 60
           M  CLLH+LIN EMTN D LD+ +D+GDS Y TT  D+INYIEASN+WTQWRD LA+ MF
Sbjct: 40  MACCLLHNLINCEMTNVDTLDENEDEGDSNYATTGGDHINYIEASNEWTQWRDDLAQSMF 99

Query: 61  NEWQLPND 67
           NEWQ  ND
Sbjct: 100 NEWQSRND 107

BLAST of IVF0026074 vs. NCBI nr
Match: KAA0051984.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04574.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (248), Expect = 3.86e-24
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 3  YCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFNE 61
          Y LLH+LIN EMTNADILDD+DKGDST+TTTS +NI YIE SN+WTQWRDALAE M NE
Sbjct: 18 YSLLHNLINWEMTNADILDDEDKGDSTHTTTSGENITYIEVSNEWTQWRDALAESMLNE 76

BLAST of IVF0026074 vs. NCBI nr
Match: KAA0063753.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 7.78e-22
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFN 60
           M  CLLH+LIN EMTN++I+DD D+ DSTY TT  D INYIEASN+W++WRD LA  MF+
Sbjct: 180 MACCLLHNLINREMTNSEIIDDLDEADSTYATTGGDEINYIEASNEWSEWRDQLAHTMFS 239

Query: 61  EWQL 64
           +W+L
Sbjct: 240 DWEL 243

BLAST of IVF0026074 vs. NCBI nr
Match: TYK10940.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.05e-21
Identity = 41/64 (64.06%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFN 60
           M  CLLH+LIN EMTN++I D+ D+ DSTYTTT  D INYIEASN+W++WRD LA  MF+
Sbjct: 130 MVCCLLHNLINREMTNSEITDNLDEDDSTYTTTGGDEINYIEASNEWSEWRDQLAHTMFS 189

Query: 61  EWQL 64
           +W+L
Sbjct: 190 DWEL 193

BLAST of IVF0026074 vs. NCBI nr
Match: KAA0035628.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK30914.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.23e-21
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 1   MTYCLLHDLINLEMTNADILDDKDKGDSTYTTTSDDNINYIEASNKWTQWRDALAELMFN 60
           +T CLLH+LIN EMTN DI D+ D+ DST+ TT+ D+I+YIE SN+W+QWRD LAE MF+
Sbjct: 40  LTCCLLHNLINREMTNFDIQDNIDEVDSTHATTAADDIHYIEMSNEWSQWRDDLAEEMFS 99

Query: 61  EWQLPN 66
           EW+L N
Sbjct: 100 EWELRN 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZZ38.1e-1879.66Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DG226.8e-1765.63Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V6M33.4e-1664.06Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3CHV99.8e-1664.06Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3BQ111.3e-1563.64Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
Match NameE-valueIdentityDescription
XP_031742024.13.78e-2469.12uncharacterized protein LOC105435527 [Cucumis sativus] >KAE8648564.1 hypothetica... [more]
KAA0051984.13.86e-2479.66retrotransposon protein [Cucumis melo var. makuwa] >TYK04574.1 retrotransposon p... [more]
KAA0063753.17.78e-2264.06putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK05505.1 putative nucleas... [more]
TYK10940.11.05e-2164.06putative nuclease HARBI1 [Cucumis melo var. makuwa][more]
KAA0035628.11.23e-2163.64putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK30914.1 putative nucleas... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026074.1IVF0026074.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding