IVF0026053 (gene) Melon (IVF77) v1

Overview


Name	IVF0026053
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr08: 29948477 .. 29948689 (-)
RNA-Seq Expression	IVF0026053
Synteny	IVF0026053

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAAGATGAGACAATTGCTGAGTTCAATGTCCGAGTACTTGACATTGCCAACGAGTCAGATGCGTTAGGAGAAAAGATGTATGACTCAAAACTTGTCCAGAAAGTCTTAAGATCTCTGCCATCCAGGTTCAATATGAAGATCACTGCAATTGAAGAAGCTAATGACCTGTCAAAGATGAAGCTGGATGAGTTGTTTGGGTCGTTATGA

mRNA sequence

ATGACAGAAGATGAGACAATTGCTGAGTTCAATGTCCGAGTACTTGACATTGCCAACGAGTCAGATGCGTTAGGAGAAAAGATGTATGACTCAAAACTTGTCCAGAAAGTCTTAAGATCTCTGCCATCCAGGTTCAATATGAAGATCACTGCAATTGAAGAAGCTAATGACCTGTCAAAGATGAAGCTGGATGAGTTGTTTGGGTCGTTATGA

Coding sequence (CDS)

ATGACAGAAGATGAGACAATTGCTGAGTTCAATGTCCGAGTACTTGACATTGCCAACGAGTCAGATGCGTTAGGAGAAAAGATGTATGACTCAAAACTTGTCCAGAAAGTCTTAAGATCTCTGCCATCCAGGTTCAATATGAAGATCACTGCAATTGAAGAAGCTAATGACCTGTCAAAGATGAAGCTGGATGAGTTGTTTGGGTCGTTATGA

Protein sequence

MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMKLDELFGSL

Homology

[Close]

BLAST of IVF0026053 vs. ExPASy TrEMBL
Match: A0A5A7TSC7 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00740 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   EDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMK 62
           EDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMK
Sbjct: 98  EDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMK 157

Query: 63  LDELFGSL 71
           LDELFGSL
Sbjct: 158 LDELFGSL 165

[Close]

BLAST of IVF0026053 vs. ExPASy TrEMBL
Match: A0A5A7TMW2 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00230 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSK 60
           MTEDETIAEFNVRVLDIANESDA GEKM DSKLV+KVLRSLPS+FNMK+TAIEEANDLSK
Sbjct: 116 MTEDETIAEFNVRVLDIANESDAFGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSK 175

Query: 61  MKLDELFGSL 71
           MKLDELFGSL
Sbjct: 176 MKLDELFGSL 185

[Close]

BLAST of IVF0026053 vs. ExPASy TrEMBL
Match: A0A5A7V046 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001550 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1   MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSK 60
           M E ETIAEFNVRVLDIANESDALGEKM DSKLV+KVLRSLPS+FNMK+TAIEEANDLSK
Sbjct: 107 MGEGETIAEFNVRVLDIANESDALGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSK 166

Query: 61  MKLDELFGSL 71
           MKLDELFGSL
Sbjct: 167 MKLDELFGSL 176

[Close]

BLAST of IVF0026053 vs. ExPASy TrEMBL
Match: A0A5A7TAY2 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G001030 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.4e-25
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1   MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSK 60
           MTEDETI EFNVRVLDI N+SDALG+KM DSKLVQKVLRSLPSRFNMK+TAIEEANDL K
Sbjct: 137 MTEDETIVEFNVRVLDIINKSDALGKKMSDSKLVQKVLRSLPSRFNMKVTAIEEANDLPK 196

Query: 61  MKLDELFGSL 71
           MKLDELFGSL
Sbjct: 197 MKLDELFGSL 206

[Close]

BLAST of IVF0026053 vs. ExPASy TrEMBL
Match: A0A5D3DEI5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001210 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.1e-24
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1   MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSK 60
           MTEDETIAEFNVRVLDI N+SDALG+KM DSKLVQKVLRS+P RFNMK+TAIEEANDL K
Sbjct: 137 MTEDETIAEFNVRVLDIINKSDALGKKMSDSKLVQKVLRSVPFRFNMKVTAIEEANDLPK 196

Query: 61  MKLDELFGSL 71
           MKLDELFGSL
Sbjct: 197 MKLDELFGSL 206

[Close]

BLAST of IVF0026053 vs. NCBI nr
Match: KAA0045046.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYJ96281.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (331), Expect = 2.87e-37
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 3   EDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMK 62
           EDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMK
Sbjct: 98  EDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMK 157

Query: 63  LDELFGSL 70
           LDELFGSL
Sbjct: 158 LDELFGSL 165

[Close]

BLAST of IVF0026053 vs. NCBI nr
Match: KAA0043137.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK23923.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 8.87e-35
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSK 60
           MTEDETIAEFNVRVLDIANESDA GEKM DSKLV+KVLRSLPS+FNMK+TAIEEANDLSK
Sbjct: 116 MTEDETIAEFNVRVLDIANESDAFGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSK 175

Query: 61  MKLDELFGSL 70
           MKLDELFGSL
Sbjct: 176 MKLDELFGSL 185

[Close]

BLAST of IVF0026053 vs. NCBI nr
Match: KAA0040128.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 3.20e-33
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1   MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSK 60
           MTEDETI EFNVRVLDI N+SDALG+KM DSKLVQKVLRSLPSRFNMK+TAIEEANDL K
Sbjct: 137 MTEDETIVEFNVRVLDIINKSDALGKKMSDSKLVQKVLRSLPSRFNMKVTAIEEANDLPK 196

Query: 61  MKLDELFGSL 70
           MKLDELFGSL
Sbjct: 197 MKLDELFGSL 206

[Close]

BLAST of IVF0026053 vs. NCBI nr
Match: TYK21749.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 1.91e-32
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1   MTEDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSK 60
           MTEDETIAEFNVRVLDI N+SDALG+KM DSKLVQKVLRS+P RFNMK+TAIEEANDL K
Sbjct: 137 MTEDETIAEFNVRVLDIINKSDALGKKMSDSKLVQKVLRSVPFRFNMKVTAIEEANDLPK 196

Query: 61  MKLDELFGSL 70
           MKLDELFGSL
Sbjct: 197 MKLDELFGSL 206

[Close]

BLAST of IVF0026053 vs. NCBI nr
Match: KAA0060050.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 2.29e-32
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 3   EDETIAEFNVRVLDIANESDALGEKMYDSKLVQKVLRSLPSRFNMKITAIEEANDLSKMK 62
           EDE IAEFN RVLDIANE DALGEKM DSKLV+KVLRSLPS+FNMK+TAIEEANDLSKMK
Sbjct: 77  EDEFIAEFNARVLDIANELDALGEKMSDSKLVRKVLRSLPSKFNMKVTAIEEANDLSKMK 136

Query: 63  LDELFGSL 70
           LDELFGSL
Sbjct: 137 LDELFGSL 144

The following BLAST results are available for this feature:

BLAST of IVF0026053 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSC7	1.5e-27	100.00	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7TMW2	2.9e-26	92.86	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5A7V046	4.2e-25	91.43	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G...	[more]
A0A5A7TAY2	5.4e-25	90.00	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G...	[more]
A0A5D3DEI5	2.1e-24	88.57	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G...	[more]

BLAST of IVF0026053 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045046.1	2.87e-37	100.00	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYJ96281.1 gag-proteinase...	[more]
KAA0043137.1	8.87e-35	92.86	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK23923.1 gag-proteinase...	[more]
KAA0040128.1	3.20e-33	90.00	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK21749.1	1.91e-32	88.57	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0060050.1	2.29e-32	89.71	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026053 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..70 e-value: 9.9E-11 score: 41.6
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 4..70
None	No IPR available	PANTHER	PTHR35317:SF13	ZINC FINGER, CCHC-TYPE-RELATED	coord: 4..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026053.2	IVF0026053.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding