IVF0026032 (gene) Melon (IVF77) v1

Overview
NameIVF0026032
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr04: 23817937 .. 23818326 (-)
RNA-Seq ExpressionIVF0026032
SyntenyIVF0026032
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGAGGCCTTGGAGTACAAAGCACGGCCATGGGCGCGTGCGGCGTGCATCAATGAGCGTGTGTGTGGAGCTCGTTGTATGCCCATGCATCTGCGGGGGGCGTGCCCCCTGGGTGCCGCGCACGCCATGCGTCTGGGGGCGTGTGTGGGGCGTGCATCGCAAGCCCATGCGACTGCAGTGGGGCGTGCGCGTAGGGTGCCGCGCACGCCATGCTTGTGCGAGCGTGGGGATCCGTCTAAGGGGCGTGCATTCTTGGCTTGTAAGTTGCAGATGAGCCTTATTGCCATGATCCACCGAGATTCAGCTCGACCTTACCCACACACAACTTATATATTTATTCCAATTGCCATGGAGGTTATAGCTTATGTAAAAGGACGAAAAACATAA

mRNA sequence

ATGGCCGAGGCCTTGGAGTACAAAGCACGGCCATGGGCGCGTGCGGCGTGCATCAATGAGCGTGTGTGTGGAGCTCGTTGTATGCCCATGCATCTGCGGGGGGCGTGCCCCCTGGGTGCCGCGCACGCCATGCGTCTGGGGGCGTGTGTGGGGCGTGCATCGCAAGCCCATGCGACTGCAGTGGGGCGTGCGCGTAGGGTGCCGCGCACGCCATGCTTGTGCGAGCGTGGGGATCCGTCTAAGGGGCGTGCATTCTTGGCTTGTAAGTTGCAGATGAGCCTTATTGCCATGATCCACCGAGATTCAGCTCGACCTTACCCACACACAACTTATATATTTATTCCAATTGCCATGGAGGTTATAGCTTATGTAAAAGGACGAAAAACATAA

Coding sequence (CDS)

ATGGCCGAGGCCTTGGAGTACAAAGCACGGCCATGGGCGCGTGCGGCGTGCATCAATGAGCGTGTGTGTGGAGCTCGTTGTATGCCCATGCATCTGCGGGGGGCGTGCCCCCTGGGTGCCGCGCACGCCATGCGTCTGGGGGCGTGTGTGGGGCGTGCATCGCAAGCCCATGCGACTGCAGTGGGGCGTGCGCGTAGGGTGCCGCGCACGCCATGCTTGTGCGAGCGTGGGGATCCGTCTAAGGGGCGTGCATTCTTGGCTTGTAAGTTGCAGATGAGCCTTATTGCCATGATCCACCGAGATTCAGCTCGACCTTACCCACACACAACTTATATATTTATTCCAATTGCCATGGAGGTTATAGCTTATGTAAAAGGACGAAAAACATAA

Protein sequence

MAEALEYKARPWARAACINERVCGARCMPMHLRGACPLGAAHAMRLGACVGRASQAHATAVGRARRVPRTPCLCERGDPSKGRAFLACKLQMSLIAMIHRDSARPYPHTTYIFIPIAMEVIAYVKGRKT
Homology
[Close]
BLAST of IVF0026032 vs. ExPASy TrEMBL
Match: A0A5A7UI67 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1775G00050 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 2   AEALEYKARPWARAACINERVCGARCMPMHLRGACPLGAAHAMRLGACVGRASQAHATAV 61
           AEALEYKARPWA A C++ R   AR MP+ LR             GAC  RA QAHATAV
Sbjct: 39  AEALEYKARPWACAPCVSGRQWVARSMPVRLR-------------GACAWRAPQAHATAV 98

Query: 62  GRARRVPRTPCLC--ERGDPSKGRAFLA 88
           G ARRVPR   +   ERG   +  A L+
Sbjct: 99  GHARRVPRVKGIIVQERGGRLRHTASLS 113

[Close]
BLAST of IVF0026032 vs. NCBI nr
Match: KAA0053169.1 (uncharacterized protein E6C27_scaffold1121G00060 [Cucumis melo var. makuwa] >TYK21291.1 uncharacterized protein E5676_scaffold1775G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 2.69e-10
Identity = 45/88 (51.14%), Postives = 51/88 (57.95%), Query Frame = 0 

Query: 2   AEALEYKARPWARAACINERVCGARCMPMHLRGACPLGAAHAMRLGACVGRASQAHATAV 61
           AEALEYKARPWA A C++ R   AR MP+ LRGA             C  RA QAHATAV
Sbjct: 39  AEALEYKARPWACAPCVSGRQWVARSMPVRLRGA-------------CAWRAPQAHATAV 98

Query: 62  GRARRVPRTPCLC--ERGDPSKGRAFLA 87
           G ARRVPR   +   ERG   +  A L+
Sbjct: 99  GHARRVPRVKGIIVQERGGRLRHTASLS 113

The following BLAST results are available for this feature:
BLAST of IVF0026032 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0026032 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UI671.3e-0851.14Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of IVF0026032 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053169.12.69e-1051.14uncharacterized protein E6C27_scaffold1121G00060 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of IVF0026032 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0026032.1IVF0026032.1mRNA