IVF0026016 (gene) Melon (IVF77) v1

Overview


Name	IVF0026016
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	AP complex subunit sigma
Location	chr01: 4469634 .. 4472366 (-)
RNA-Seq Expression	IVF0026016
Synteny	IVF0026016

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACGACGGAGGAGAAGAAGCTTTACTGTGATCAGAGAGATCGAATTTTTTTTGTTGAGGATTTTGGCTTTGAGACCTCTGGTTCTTGGGAGTTCATAACAAAATGGTATTTGATTTCGTTGCTTTGATTCATTTCTTGATTTTGATTGTTTCAAGGTTGAAATTGTGTTGTTCAGAGCGTTTTAGTCTTCCTCATCGTGGATCTGATTTGGTCTTTCTTTATGGGATGGATTAATTGGCTCCTTTTATGCTTCTGAATTGTTGTTTTGTTCTTGAGTTGATTTGGTGTGGTTTTCGTTGGTGTTTGATTCAGATCTTTGCTTAGCTGACATCCGAATTTTTGCCCAATTTTCGTTTCTATTTGTTGTTTGATTTGTCGTGCTAGATTTAGTCTTACTATAGGTGGTTTTGTTGAGCCTCTCTTGGGCGGAGCTGTTTATTCTCGGTTGAGCTAATAATGTTAGGTGCAAACAAATACCTAAATTGGTCAAGGAAGGAAGTGCTCATGTATATATAAGTTAGGATGATTCTCTCCTTTGATATAAGCTTTTAGAGTGGTTCAAAAAACAAAGTCATTAGAGTTTATGCTCGAGATGTACATACGGGTGGAACAATATATACCATCGTAGAGATATATAAGATTCTGTTGTCCTTGACTAGACCGGAGAAGTGGAAATTCTTGTTTCATTTCGTTTGTTCTCAAGCTTGTGAGTTTGTTTCAGCCATGAATTTCTGAATGTTATTTTTGCTCTCTTCTCAAGGACTTTTGTCAATTACCCATAAGTTTTTACTATTGTGGGTTGGATTCCTTTTTGTAGGGCTTAGTTTTTTGGCATCTTTGGTTTGAGGTGTTTTTTGTATGCTCTTTAGCTTTTTCTGTTGCATTCTTTCATTTCTTTTTTCAATGAAAGCGTGGTTTGTCTTTAAACAGTTGTTCTCCTCTTTCCTTGTGCAACTTAAGTTCATTGCTTATATCTTCAACTATTTTTCCTCACAAAAGCAAAGATGACCTAATCAAAATCTTACATAGTTTTCTTAATAAAAACAACTGCTTTCATTGAGGAAAAAAAATGAAAGAATACAAGGTGTTCTAACTGATGTTCTTGGTGTAAATTCCAGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCATATTCTCAGAAGGAGAGATCTAAGGTAGGTCAGCTATTTGCCTCTTTCTGTAATTTAATGCTAATAGCTTCTATCAATTTTCAAGCAATTTTGTAAAAACATGTTTCCTTTCCATAAAGTTTATTTATTACCTTAATAAGACTTAATTCCCCTAGAATCTATTGGACTTACCACATTATGGCATGTGCTTGCGCTTATGTTCTTGAAACAGGTTATCCGTGAGCTCAGTGGAATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGCTGTCTATAAACGGTACTTCATGGTTTATTGATGTGTTCTGCAACCCACTTCATGGTTTATTGATGTGTTCTGCAACCCAAATTTTTAATATTGTCCATGTTGCATGTTCTAAATATGATAAATGATTCTACTGGACATGCAACGCAGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGATGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTCGGCAGTGTAAGTGAATTCAGCTATAGTTCATAAGTTGTTTGAAACTATTCTTCTTGCATCCCCCTCTTTAGTTGACTACCTAAGCTGACACTTAATTTTTTCATTATTATCATCTTTCATTTATGCCTGTAGGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGTATTATTGACTTGTTAATATAAACTATGCACCTTCTCTTCAATATGCATTTCATTGTCTCTGAATTAGTTGCACTTGCAGTGTAGCTTCTGACCATTGAATATTTCTTGATTGGATGTTCACAGTCTTTATACGAAACTTTGAATGCAATTTTAACATTGCAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGTACTCTTTTCTCTTATCTTTGTAATACCTTAGTTAAGATATCTTGTTTTTATGAGAAACATTCAACAATAATCTCATTGATAGAATGAAATTACGCAAGGGCAAATGCGCTGTGAGAGTTACATATTACTTTTTCCAATGTCTCTCACATATTACTTTTTCCAATGTGCAACAAGGGGAATAAGCACAAAAGAAGAAAATTTACACCAAGACAGAGAAATATACCTTCGTTAAGATTTTAATTTAGCTGACCATATGGTAATTGCTATATCATCATTGTAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAGATGAATAACTTGAGAGTGTATGTTTCAGTTTTTGCGAAATTGATTTGTTCTGAAGTATTGTAATTATATGTTATCTCAACTTGTATCAAACAAGTTAATGCCTTATTTTTGCTTATTTCATTTGTTGTATTCCACAAATTGCTTTTTGGAATTTCTAGTAGTTCCATCTACCTGCCTAACTGTTCTCCTCGATTTTTCTATTGTTCATCATATACAAATGTTATTGCTTGCTGGAAA

mRNA sequence

GAACGACGGAGGAGAAGAAGCTTTACTGTGATCAGAGAGATCGAATTTTTTTTGTTGAGGATTTTGGCTTTGAGACCTCTGGTTCTTGGGAGTTCATAACAAAATGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCATATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTCAGTGGAATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGATGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTCGGCAGTGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAGATGAATAACTTGAGAGTGTATGTTTCAGTTTTTGCGAAATTGATTTGTTCTGAAGTATTGTAATTATATGTTATCTCAACTTGTATCAAACAAGTTAATGCCTTATTTTTGCTTATTTCATTTGTTGTATTCCACAAATTGCTTTTTGGAATTTCTAGTAGTTCCATCTACCTGCCTAACTGTTCTCCTCGATTTTTCTATTGTTCATCATATACAAATGTTATTGCTTGCTGGAAA

Coding sequence (CDS)

ATGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCATATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTCAGTGGAATGATTCTAAATCGAGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTGAAAGCTGTCTATAAACGATATGCTAGTCTTTACTTTTGCATGTGCATCGATCAGGATGACAATGAACTAGAGGTCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTCGGCAGTGTCTGCGAATTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

[Close]

BLAST of IVF0026016 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 9.1e-81
Identity = 149/160 (93.12%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 161
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of IVF0026016 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.6e-80
Identity = 148/161 (91.93%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCID+ DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.9e-58
Identity = 103/141 (73.05%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 3   HFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRY 62
           HF+LL+SRQGK RLTKWYSP++ KE+S+  RE+  M+LNR PKLCNF+EW+  K ++KRY
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query: 63  ASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
           ASLYF +C D++DNEL VLEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++AGE
Sbjct: 64  ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

Query: 123 LQESSKKTVARLIAAQDSLVE 144
           LQE+SKKTV RLI+ QD+L+E
Sbjct: 124 LQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of IVF0026016 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.4e-49
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKE 148
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of IVF0026016 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.4e-49
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKE 148
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of IVF0026016 vs. ExPASy TrEMBL
Match: A0A1S3CGG1 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.5e-83
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.0e-82
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 197

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of IVF0026016 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.7e-82
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. ExPASy TrEMBL
Match: A0A0A0K1P7 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.9e-82
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. ExPASy TrEMBL
Match: A0A6J1I247 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQDDNELEVLE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. NCBI nr
Match: XP_008462009.1 (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 318 bits (816), Expect = 1.42e-109
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. NCBI nr
Match: XP_038888262.1 (AP-1 complex subunit sigma-2 [Benincasa hispida])

HSP 1 Score: 318 bits (815), Expect = 2.01e-109
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. NCBI nr
Match: XP_022135730.1 (AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex subunit sigma-2 [Momordica charantia])

HSP 1 Score: 317 bits (811), Expect = 8.20e-109
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. NCBI nr
Match: XP_004144562.1 (AP-1 complex subunit sigma-1 [Cucumis sativus])

HSP 1 Score: 316 bits (809), Expect = 1.65e-108
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (813), Expect = 5.90e-108
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 197

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of IVF0026016 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 300.8 bits (769), Expect = 6.5e-82
Identity = 149/160 (93.12%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 161
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of IVF0026016 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-81
Identity = 148/161 (91.93%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCID+ DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of IVF0026016 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 221.5 bits (563), Expect = 5.0e-58
Identity = 103/109 (94.50%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 110
           RYASLYFCMCIDQ+DNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of IVF0026016 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 74/141 (52.48%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR  K  NFVE+R  K +Y+
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQESSKKTVARLIAAQDSL 142
           GELQE+SK+ +   ++  + L
Sbjct: 121 GELQETSKRAIIERMSELEKL 141

[Close]

BLAST of IVF0026016 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 5.4e-28
Identity = 57/138 (41.30%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61
           I F+L++++QG+ RL ++Y   + +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 62  YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
           YASL+F + +D D+NEL +LE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 122 ELQESSKKTVARLIAAQD 140
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of IVF0026016 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	9.1e-81	93.13	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	2.6e-80	91.93	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	4.9e-58	73.05	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	5.4e-49	64.38	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	5.4e-49	64.38	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of IVF0026016 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGG1	4.5e-83	100.00	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1	[more]
A0A5D3D5G1	1.0e-82	99.38	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1C1K2	1.7e-82	98.76	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]
A0A0A0K1P7	2.9e-82	98.76	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1	[more]
A0A6J1I247	1.1e-81	98.14	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1	[more]

BLAST of IVF0026016 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462009.1	1.42e-109	100.00	PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]	[more]
XP_038888262.1	2.01e-109	99.38	AP-1 complex subunit sigma-2 [Benincasa hispida]	[more]
XP_022135730.1	8.20e-109	98.76	AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex ...	[more]
XP_004144562.1	1.65e-108	98.76	AP-1 complex subunit sigma-1 [Cucumis sativus]	[more]
KAA0050549.1	5.90e-108	99.38	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]

BLAST of IVF0026016 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	6.5e-82	93.13	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	1.9e-81	91.93	associated protein 19	[more]
AT4G35410.1	5.0e-58	94.50	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.5e-38	52.48	SNARE-like superfamily protein	[more]
AT2G19790.1	5.4e-28	41.30	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..152 e-value: 1.4E-67 score: 224.3
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..152
None	No IPR available	GENE3D	3.30.450.60		coord: 1..157 e-value: 4.4E-66 score: 223.5
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 1..152
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..140 e-value: 3.0E-54 score: 182.8
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 3..143 e-value: 1.53363E-102 score: 288.302
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026016.1	IVF0026016.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity