IVF0025997 (gene) Melon (IVF77) v1

Overview


Name	IVF0025997
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-repair protein XRCC1 isoform X2
Location	chr01: 31510247 .. 31515197 (-)
RNA-Seq Expression	IVF0025997
Synteny	IVF0025997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTGCTAACCTTACTCGATCACGAAACGCTGTTATGTCAGTGGTCAAATTTCACTTCAGCTTGGCGACTGCATATCGAACTTAATGCACTGCTCAATTTTTGAACAACTTGTGTTTTGACCTCGTTGAGCTTAATACTCCCATTTTCCTGTCGGTTCGCTACCAAATGTTGTGTTAATTTTCTATTATTATTCGTTATTATCTTGATATAAAGTGGCAACATTAGTTTTTCAAGTTCGATTGGGTATTGAGAATTGATGAGATGAAATTGACATGAATTCGTTTAGGTTTGGTTAGGTTTAGTCATTAGTGCTTCTATGTTTGTGCTTCTGGCAATAATTTGAAGTTGTTTCAGTATTGTAAAACAGCGTCCATAATTTTTGTAGGCTCTTACTCGCACCATTTTAGTGCTTTGAGAACGGGTGTCTTTAGAGTTTTCTTGCAAGTCTTCATTGTATTTGAGAAGAGCTGACAAATTTCAGCCTGGTAGTAGAAAGTTAATTGCTCTAGCAGGAGCATGTCAAATTCAAAGGCTAACGAGGGTGGTGGCAGTGCTAAGCGCAGTCTTCCTTCATGGATGAGCGGGAAGGACGATGGAAGTACGTCTCGAGGCAAGAAACCAAACAGTTCTGGTTCTGTTGGAAATGATTTGATGATCGAAGCTGAAGAGCCTAAGCAACAGAAGGGAAATGGTGAAAGTCCAGTGAGCAGCTCATTACACCGTGATTTCTCCAGACTTCTGGTTCACATACTGTCACTTTTCACCCATTGTTTTCCTTTGACCTGCTATTTTTACATATTTTGATAGTTGACGGTCACGCTAAACTAAAATACCAACGTTAAATGCAGGAAGGAGTAGTTTTTGTGTTGTCAGGTTTTGTTAATCCCGAGCGCAGCATTTTGCGATCTCAAGCTTTAGAAATGGGAGCTCAATATAAACCTGATTGGAACTCAGATTGCACTTTGTTGATCTGCGCTTTCCCAAATACTCCAAAATTTCGGCAAGTGGAGTCAGATTGCGGAACCATAGTATCAAAGGTTTTTTCTTTGAACAAAAACTTGAACATCAACCAGAGATTTTTACAAAGAAAAAATGTGTTGGCTTTGATATAATAGGAATCTGAGAGTTGGTTGCTAAATTTTTTTCTAATGCTAGATTTGATTAAAGGGAAAACTTGATAGCAGTATGTTTGGTGTCAATTATTCAACGATGTTGATGATATGAAATAAATGTTCTGCTTATTTTAGTAGGTTCTGAACATTCTTTGGTTTTTTTGAAATATTCTCAGTCTTGCTTTTGTCATGGGTTCTTTTTCTTGGATGATGAAAACTAACAAGTTTTATTCTTCATTAACATGTTATATCATATTGCTCCCTTTCAAGCATATCAATATCGGCACATTTTCTCCTAAATTTAGATGTATTTAGAAATCAAGTCAAAAATGTGACTGTATAATATCTGATTGTCACTGATACGGGGATTCTAAATTGTTGATCTAGGTTCTAAGTGCTCTCATTCTGTCTTCTTTCTTAGGAGTGGATTTCAGAATGTTATGCACAGAAGAGGCTCGTTGACATTGAAAGCTACCTCCTCTATGCTGGAAAACCTTGGAGAAGAAGCGACCTTTCACATGAAGCCACCCAAGGTGATCTAGAAATAAATATGTTTCCATGCTGTTGTTCCACCGAATGTTAATGTTAGTTACAAGACTCAAAACCACCATAGCCATAGCTGGCACAGTAGTCAACTATAGTCAAACTTGGTGCATTTTTTTCCGATCTACCAACTTTAGAAGAAACAAACTTCTTTGTGATCATATTAAAAATACAAAGAGATATACAAATTATAGGAGGTTACAAAAGCTACACCAATTGGTTGCGATGAGAAAGGTGTAATTATTACTTGAGAGGAAGAGAGTGAATACGTAGCATTTAATCTTTTTTCCGAATAAAAAATATTCTCCCAACCTTACTGATTCCTTCAAAATGTTCTTTAATTCCTTTCCTACTGAACATTCTGAAGTGTTTTTACCACACAAACCCATGAAAACTTATATTTCTGTAGAAGCCACAAAGGAGTTACTGAAGGTTCACGACTGGAGAATCTACCATACACCAAGGTTAAGTTCCTTAAAAACCTTACTCCAGCAGTTGTAAATGATTCTATAACTAAGAAAAATATGGTTCTTATTTTCACCGCCTTACATCAGAACCAGCTAGAAAACAATTAGCAATTAAGATTTTTTTTCCCTATATATTATTTACTGTGTTATGCTCGTTTTTGAACCAGAAACAACTTGTCATTGATAATATGACAAGGAAATATTCAGGAAACAAACTCCCGATGGAGTGAGAAGGAAAAGGAAAAAAAATGAACCTTAAAACAACCTCAACTAGAGCATTATAACCAAAAAAAGACGAAGAAAATCAGAAACAATGAGCCATAATGATCCAGGTACGGCAGCCCCCAAGAACAAGGCTTCAAGTCTCCAACAAAGAACCCAAAAACAAACTCTACGAGAAAATGATTTAAAAAAAAATAACCAAAAACAAAAATATGAGAGAAGAAAGAAACCCCAACTATTGGAGTCAGCCAAACAAAGGAGAAAATGTAGGCCCCTAAAAAAACATGGGAGCTTACTATACCCAGAGAAAGACGCCTTTAATCACCTAATGATCCAAAAGGAGAATTCGATGAGTAAATTTCCTCTCCCTGAGGGAGAACTTGATGTCTTAGCAAAATATCCTTGTTTAGTGGCAGTTTGACACCCCCCCCCCCCCGGTTGGTGTCATGGCTTTGGACACTTGAAGTCTTGTACCTATCATTTTGTTGTTTTCCTGATTTTTTCAAATGTTTTGATGCTTTCCTTCCTTCGCCATGTACCTGATATGCCGAAAAATCATATTTTAATTTCCCGTCATTCATTTTCATTCCTGGGGTCTATGGTTGCAGATATTCCATCAGAATTCAAGAAACCTCAGAAAGTGGTTGAAAAAGTTTCACGTTCAAAACCACATGAGTCAGAGATAGCTCAGGTAAAAAGTCTAATTCTTTTGAAATTATATTCCATTATATCGTCTGTCTTTCCATCCTGATTGGTGATTTGTATGCTTTGTATGGGACGTAACAAAACAAAACCGACCTTTTGTGGGATGCTGGTTATTGTTCGGCTACATCTTTTATATTCATGCACATACAAATGCTGATATATGGCTATTTGTACCATTGATTGTGCGAGATATCCAGAGTAGACGGAGTAATCTTTCAAGAGACTGCTTTTCTCCTTCGAAATTGAAGAAGTGGGCTATTGATGATTACCATAAGACACTTTCTTGGCTAGAGAGTCAGGAAGAGAAGGTAACACACGTGCTTTTCTGTTTTATGCAATGTATAGATTTGATTCTTCAAGCACAAAGTAACCCAATTGAGTTCAATGGCAACCTGGAATCTTCTCTCAATCCCTTGGTTGATTTTTAGGAATGTATGGGCTCTTTGGTTTTTCACACTTCAAATTTGGATAGATGGTGAGACTTCGTTGATTTTAATTCTTATTTTTAACCTTTGTAGCCAGATCCAAGTGAGATAAAGAAAATAGCAGCAGAAGGAATTTTAACTTGTTTACAAGATGCCATAGATTCTCTTCATCAAAATCAGGTAGACAGTTTTTTCCTATTTATGTATTTACGATCTATTTATTTCTCCTTTGCACTCACTGTGCTACTAAATGCTTGCCTAACTATATGTTGTTGAGATTTCCCTCTAGAAGGATTTGAAGATTCATATTTACTTATTATAAATCCATCAATTCTTCTTGTCTTGCCTTGATCAAGTTAACTTCCCCGTTTGTCACATGTGAATGCAGTATTTAAACATTTTTCATTCTTGGAATGGATTAAATATGTGATATTGGAAAGATCCGTCGCTCTTTTTCTATGTTTTTTTTTTCTTTTCCTGTGAAGCATACCAAATTTTGTTAGTCTGACTCCTGTAAGATTATATGGCTTTTAGCTCAAGCTTCTTATCCCTTGTTTTCTAAATGGTCTCGGTATCTCGCTAGTGTGAGAAAACAGATGATATTTCGGACCAATCAGCTATAATGTGAATGATCAGGCATTTCAACCCTTGACAGTTGCAACTTAGCATGAGAACCATTATAACGCTGATTTCTATTGGCTGGGTATAATTTTGAGTTCAACTGGTGTTGAATTTTGTACCTTCACGGTTCATGCGAGCGTCCTGTCAAATATTTTACTGTCACTTCTCTCGTTATCTCGCCTTTCTCGCCATGTGCTTGCGTGCTTCGTTGTTCAGTTATTTTATTCAACGTGAAATGGAAAAGGTATCTGCTCTCAGCCTTGGATTGGCACTTTAAACACAATTAATTCGTGTGCAGGACATCAATCAGATGATTGAAGAGTGGAAGTTCGTTCCCCAGGTGGTGGAAGAGCTGGCAAAGCTTAGCAATAAGAAAGAGTCGATATCAAAGGATGAACTTTGCAGGCATGCTACAGATTCTAAGAGCATTTATGAAGTAGAACTTAATTCTCTTCTTGACGGCTCCCCAGAAAGAAAGAAGAAGGGAAATATCAAGAAAGAATCGAAGAAGGGTCGTGAAACAAAGGAATATGATAGTGATGACACGATTGAGATGACTGAGGAGGAGATAGACGTGGCATTCCATAAAGTAGTTTGTAAGAATTCTTAGTTTAGGTCCTTTGAGATTTATAAAGAGTAAAACGCTTTTGGTGGTATGCATTGTTGCCATGGTATGCTTGTTTTAATCTAAAGAAGTGAGAATGGG

mRNA sequence

GTTTCTTGCTAACCTTACTCGATCACGAAACGCTGTTATGTCAGTGGTCAAATTTCACTTCAGCTTGGCGACTGCATATCGAACTTAATGCACTGCTCAATTTTTGAACAACTTGTGTTTTGACCTCGTTGAGCTTAATACTCCCATTTTCCTGTCGGTTCGCTACCAAATGTTGTGTTAATTTTCTATTATTATTCGTTATTATCTTGATATAAAGTGGCAACATTAGTTTTTCAAGTTCGATTGGGTATTGAGAATTGATGAGATGAAATTGACATGAATTCGTTTAGGTTTGGTTAGGTTTAGTCATTAGTGCTTCTATGTTTGTGCTTCTGGCAATAATTTGAAGTTGTTTCAGTATTGTAAAACAGCGTCCATAATTTTTGTAGGCTCTTACTCGCACCATTTTAGTGCTTTGAGAACGGGTGTCTTTAGAGTTTTCTTGCAAGTCTTCATTGTATTTGAGAAGAGCTGACAAATTTCAGCCTGGTAGTAGAAAGTTAATTGCTCTAGCAGGAGCATGTCAAATTCAAAGGCTAACGAGGGTGGTGGCAGTGCTAAGCGCAGTCTTCCTTCATGGATGAGCGGGAAGGACGATGGAAGTACGTCTCGAGGCAAGAAACCAAACAGTTCTGGTTCTGTTGGAAATGATTTGATGATCGAAGCTGAAGAGCCTAAGCAACAGAAGGGAAATGGTGAAAGTCCAGTGAGCAGCTCATTACACCGTGATTTCTCCAGACTTCTGGAAGGAGTAGTTTTTGTGTTGTCAGGTTTTGTTAATCCCGAGCGCAGCATTTTGCGATCTCAAGCTTTAGAAATGGGAGCTCAATATAAACCTGATTGGAACTCAGATTGCACTTTGTTGATCTGCGCTTTCCCAAATACTCCAAAATTTCGGCAAGTGGAGTCAGATTGCGGAACCATAGTATCAAAGGAGTGGATTTCAGAATGTTATGCACAGAAGAGGCTCGTTGACATTGAAAGCTACCTCCTCTATGCTGGAAAACCTTGGAGAAGAAGCGACCTTTCACATGAAGCCACCCAAGATATTCCATCAGAATTCAAGAAACCTCAGAAAGTGGTTGAAAAAGTTTCACGTTCAAAACCACATGAGTCAGAGATAGCTCAGAGTAGACGGAGTAATCTTTCAAGAGACTGCTTTTCTCCTTCGAAATTGAAGAAGTGGGCTATTGATGATTACCATAAGACACTTTCTTGGCTAGAGAGTCAGGAAGAGAAGCCAGATCCAAGTGAGATAAAGAAAATAGCAGCAGAAGGAATTTTAACTTGTTTACAAGATGCCATAGATTCTCTTCATCAAAATCAGGACATCAATCAGATGATTGAAGAGTGGAAGTTCGTTCCCCAGGTGGTGGAAGAGCTGGCAAAGCTTAGCAATAAGAAAGAGTCGATATCAAAGGATGAACTTTGCAGGCATGCTACAGATTCTAAGAGCATTTATGAAGTAGAACTTAATTCTCTTCTTGACGGCTCCCCAGAAAGAAAGAAGAAGGGAAATATCAAGAAAGAATCGAAGAAGGGTCGTGAAACAAAGGAATATGATAGTGATGACACGATTGAGATGACTGAGGAGGAGATAGACGTGGCATTCCATAAAGTAGTTTGTAAGAATTCTTAGTTTAGGTCCTTTGAGATTTATAAAGAGTAAAACGCTTTTGGTGGTATGCATTGTTGCCATGGTATGCTTGTTTTAATCTAAAGAAGTGAGAATGGG

Coding sequence (CDS)

ATGTCAAATTCAAAGGCTAACGAGGGTGGTGGCAGTGCTAAGCGCAGTCTTCCTTCATGGATGAGCGGGAAGGACGATGGAAGTACGTCTCGAGGCAAGAAACCAAACAGTTCTGGTTCTGTTGGAAATGATTTGATGATCGAAGCTGAAGAGCCTAAGCAACAGAAGGGAAATGGTGAAAGTCCAGTGAGCAGCTCATTACACCGTGATTTCTCCAGACTTCTGGAAGGAGTAGTTTTTGTGTTGTCAGGTTTTGTTAATCCCGAGCGCAGCATTTTGCGATCTCAAGCTTTAGAAATGGGAGCTCAATATAAACCTGATTGGAACTCAGATTGCACTTTGTTGATCTGCGCTTTCCCAAATACTCCAAAATTTCGGCAAGTGGAGTCAGATTGCGGAACCATAGTATCAAAGGAGTGGATTTCAGAATGTTATGCACAGAAGAGGCTCGTTGACATTGAAAGCTACCTCCTCTATGCTGGAAAACCTTGGAGAAGAAGCGACCTTTCACATGAAGCCACCCAAGATATTCCATCAGAATTCAAGAAACCTCAGAAAGTGGTTGAAAAAGTTTCACGTTCAAAACCACATGAGTCAGAGATAGCTCAGAGTAGACGGAGTAATCTTTCAAGAGACTGCTTTTCTCCTTCGAAATTGAAGAAGTGGGCTATTGATGATTACCATAAGACACTTTCTTGGCTAGAGAGTCAGGAAGAGAAGCCAGATCCAAGTGAGATAAAGAAAATAGCAGCAGAAGGAATTTTAACTTGTTTACAAGATGCCATAGATTCTCTTCATCAAAATCAGGACATCAATCAGATGATTGAAGAGTGGAAGTTCGTTCCCCAGGTGGTGGAAGAGCTGGCAAAGCTTAGCAATAAGAAAGAGTCGATATCAAAGGATGAACTTTGCAGGCATGCTACAGATTCTAAGAGCATTTATGAAGTAGAACTTAATTCTCTTCTTGACGGCTCCCCAGAAAGAAAGAAGAAGGGAAATATCAAGAAAGAATCGAAGAAGGGTCGTGAAACAAAGGAATATGATAGTGATGACACGATTGAGATGACTGAGGAGGAGATAGACGTGGCATTCCATAAAGTAGTTTGTAAGAATTCTTAG

Protein sequence

MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEFKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISKDELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDVAFHKVVCKNS

Homology

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BLAST of IVF0025997 vs. ExPASy Swiss-Prot
Match: Q24JK4 (DNA-repair protein XRCC1 OS=Arabidopsis thaliana OX=3702 GN=XRCC1 PE=1 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 3.8e-90
Identity = 194/365 (53.15%), Postives = 245/365 (67.12%), Query Frame = 0


Query: 12  SAKRSLPSWMSGKD---DGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLH 71
           S KR+LPSWMS +D     S S  KKP   G        E           E    SS  
Sbjct: 2   SQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTE-----EHNSRNAPSNKSEHAEPSSNT 61

Query: 72  RDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQV 131
            +FS+L+EGVVFVLSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQV
Sbjct: 62  TEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQV 121

Query: 132 ESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEF-KKPQKV 191
           E++ GTI+SKEWI+ECYAQK+LVDIE YL++AGKPWR+S    +A ++      KKP+K 
Sbjct: 122 ETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQ 181

Query: 192 VEKVSRSKPHESEIAQSRRS-NLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEI 251
           VEK + ++   S  +++R + NL ++ F  +++KKWA DD  +T+SWLESQEEKP+P EI
Sbjct: 182 VEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEI 241

Query: 252 KKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKL--SNKKE--SISKDE 311
           K+IAAEG+LTCLQDAIDSL Q QDI  + E W FVP+VV+EL K+  S+KKE  + SK+E
Sbjct: 242 KRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEE 301

Query: 312 LCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDV 368
           +C+ A   K IYE EL           K G   ++    R    YDSD T+EMTEEEI++
Sbjct: 302 VCKQAKSWKKIYEAEL----------AKPG---EDESTSRVACGYDSDMTVEMTEEEIEL 348

[Close]

BLAST of IVF0025997 vs. ExPASy Swiss-Prot
Match: Q9ESZ0 (DNA repair protein XRCC1 OS=Rattus norvegicus OX=10116 GN=Xrcc1 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-22
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 52  PKQQKGNGESPVSSSL-HRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNS 111
           P + +G G  P  +    ++  ++L+GVV VLSGF NP RS LR +ALE+GA+Y+PDW  
Sbjct: 296 PGKPRGEGTEPRGARAGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTP 355

Query: 112 DCTLLICAFPNTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLL 159
           D T LICAF NTPK+ QV    G IV KEW+ +CY  +R +    YL+
Sbjct: 356 DSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCYRMRRRLPSRRYLM 403

[Close]

BLAST of IVF0025997 vs. ExPASy Swiss-Prot
Match: O54935 (DNA repair protein XRCC1 OS=Cricetulus griseus OX=10029 GN=XRCC1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-22
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 0


Query: 69  RDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQV 128
           ++  ++L+GVV VLSGF NP RS LR +ALE+GA+Y+PDW  D T LICAF NTPK+ QV
Sbjct: 315 QELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTPDSTHLICAFANTPKYSQV 374

Query: 129 ESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEFKKPQKVV 188
               G IV KEW+ +CY  +R +    YL+ AG        S +   D P E  + +   
Sbjct: 375 LGLGGRIVRKEWVLDCYRLRRRLPSRRYLM-AG----LGSSSEDEEDDSPGESGEDE--A 434

Query: 189 EKVSRSKPHESEIAQS 205
            K+SR +P      Q+
Sbjct: 435 PKLSRKRPQAKAKTQA 443

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BLAST of IVF0025997 vs. ExPASy Swiss-Prot
Match: Q60596 (DNA repair protein XRCC1 OS=Mus musculus OX=10090 GN=Xrcc1 PE=1 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-21
Identity = 58/152 (38.16%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 52  PKQQKGNGESPVSSSL-HRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNS 111
           P + +G G  P  +    ++  ++L+GVV VLSGF NP RS LR +ALE+GA+Y+PDW  
Sbjct: 296 PGKPRGEGTEPRGARTGPQELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTP 355

Query: 112 DCTLLICAFPNTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLL--YAGKPWRRSD 171
           D T LICAF NTPK+ QV    G IV KEW+ +C+  +R +    YL+           D
Sbjct: 356 DSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHHMRRRLPSRRYLMAGLGSSSEDEGD 415

Query: 172 LSHEATQD----IPSEFKKPQKVVEKVSRSKP 197
              E+ +D    +P +  +P+   +    S P
Sbjct: 416 SHSESGEDEAPKLPQKRPQPKAKTQAAGPSSP 447

[Close]

BLAST of IVF0025997 vs. ExPASy Swiss-Prot
Match: P18887 (DNA repair protein XRCC1 OS=Homo sapiens OX=9606 GN=XRCC1 PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 6.4e-21
Identity = 66/186 (35.48%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 37  SSGSVGNDLMIEAEEPKQQKGNGESPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQ 96
           + G+V      E  EP++ +   E         +  ++L+GVV VLSGF NP RS LR +
Sbjct: 291 AQGAVTGKPRGEGTEPRRPRAGPE---------ELGKILQGVVVVLSGFQNPFRSELRDK 350

Query: 97  ALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESY 156
           ALE+GA+Y+PDW  D T LICAF NTPK+ QV    G IV KEW+ +C+  +R +    Y
Sbjct: 351 ALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRLPSRRY 410

Query: 157 LLYA-GKPWRRSDLSH---------EATQDIPSEFKKPQKVVEKVSRSKPHESEIAQSRR 213
           L+   G      + SH         +  Q  P    KP +     S  KP   E  ++  
Sbjct: 411 LMAGPGSSSEEDEASHSGGSGDEAPKLPQKQPQTKTKPTQAAGPSSPQKPPTPEETKAAS 467

[Close]

BLAST of IVF0025997 vs. ExPASy TrEMBL
Match: A0A5A7USA9 (DNA-repair protein XRCC1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002530 PE=4 SV=1)

HSP 1 Score: 733.0 bits (1891), Expect = 6.1e-208
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
           FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360
           DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI
Sbjct: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360

Query: 361 DVAFHKVVCKNS 373
           DVAFHKVVCKNS
Sbjct: 361 DVAFHKVVCKNS 372

[Close]

BLAST of IVF0025997 vs. ExPASy TrEMBL
Match: A0A1S4E338 (DNA-repair protein XRCC1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499750 PE=4 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 4.4e-206
Identity = 369/372 (99.19%), Postives = 370/372 (99.46%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
            PVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
            KKPQKVVEKVSRSKPHESEIAQSR+SNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQKVVEKVSRSKPHESEIAQSRQSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360
           DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI
Sbjct: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360

Query: 361 DVAFHKVVCKNS 373
           DVAFHKVVCKNS
Sbjct: 361 DVAFHKVVCKNS 372

[Close]

BLAST of IVF0025997 vs. ExPASy TrEMBL
Match: A0A1S4E335 (DNA-repair protein XRCC1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499750 PE=4 SV=1)

HSP 1 Score: 707.6 bits (1825), Expect = 2.7e-200
Identity = 358/361 (99.17%), Postives = 359/361 (99.45%), Query Frame = 0


Query: 12  SAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLHRDF 71
           SAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE PVSSSLHRDF
Sbjct: 30  SAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGEGPVSSSLHRDF 89

Query: 72  SRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESD 131
           SRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESD
Sbjct: 90  SRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESD 149

Query: 132 CGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEFKKPQKVVEKV 191
           CGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE KKPQKVVEKV
Sbjct: 150 CGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSESKKPQKVVEKV 209

Query: 192 SRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAA 251
           SRSKPHESEIAQSR+SNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAA
Sbjct: 210 SRSKPHESEIAQSRQSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAA 269

Query: 252 EGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISKDELCRHATDSK 311
           EGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISKDELCRHATDSK
Sbjct: 270 EGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISKDELCRHATDSK 329

Query: 312 SIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDVAFHKVVCKN 371
           SIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDVAFHKVVCKN
Sbjct: 330 SIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDVAFHKVVCKN 389

Query: 372 S 373
           S
Sbjct: 390 S 390

[Close]

BLAST of IVF0025997 vs. ExPASy TrEMBL
Match: A0A0A0KAC1 (BRCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G440580 PE=4 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 4.3e-193
Identity = 347/372 (93.28%), Postives = 353/372 (94.89%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSS SVGNDLM+EAEEPKQ+KGNGE
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSASVGNDLMVEAEEPKQEKGNGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
            PVSSSLH DFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHHDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRR DLS EATQDIPS 
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRCDLSREATQDIPSP 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
            KKPQ+VVEK S  KPHE EIAQSRRSN SRDCFSPSKLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQRVVEKTSHLKPHEPEIAQSRRSNFSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQM EEWKFVPQVVEELAKLSNKKESISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360
           +ELCR ATDSKSIYEVELNSLL+ SPERKKK  +KKESK G ETKEYDSDDTIEMTEEEI
Sbjct: 301 EELCRQATDSKSIYEVELNSLLESSPERKKKRIVKKESKNGHETKEYDSDDTIEMTEEEI 360

Query: 361 DVAFHKVVCKNS 373
           DVAFHKVVCKNS
Sbjct: 361 DVAFHKVVCKNS 372

[Close]

BLAST of IVF0025997 vs. ExPASy TrEMBL
Match: A0A6J1GQV2 (DNA-repair protein XRCC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456640 PE=4 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 6.0e-171
Identity = 316/371 (85.18%), Postives = 332/371 (89.49%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MSNSKANEGGG+AKRSLPSWMSGKD GSTSRGKKPNSS S  ND+M EAEEP+Q+K  GE
Sbjct: 1   MSNSKANEGGGNAKRSLPSWMSGKDGGSTSRGKKPNSSCSGQNDVMAEAEEPRQEKVIGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
            PVSSSLH DF+RLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHTDFTRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQ++LVDIESYLL+AGKPWRRS+   EATQ  P+ 
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQRKLVDIESYLLHAGKPWRRSNEPREATQAFPTP 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
            KKPQK VEK SR K HE EIAQSR    SR+CFSPSKLKKWAIDDYHKTLSWL+SQEEK
Sbjct: 181 SKKPQKPVEKNSRLKSHEQEIAQSREIISSRECFSPSKLKKWAIDDYHKTLSWLDSQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQM EEWKFVPQVVEELAKL +KKESISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLRSKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKK-GNIKKESKKGRETKEYDSDDTIEMTEEE 360
           +ELCRHATDSK IYEVELNSLL  SPERKKK  NI KE K G + KEYDSDDTIEMTEEE
Sbjct: 301 EELCRHATDSKRIYEVELNSLLASSPERKKKPPNINKELKNGHKAKEYDSDDTIEMTEEE 360

Query: 361 IDVAFHKVVCK 371
           ID+AF KV CK
Sbjct: 361 IDIAFQKVACK 371

[Close]

BLAST of IVF0025997 vs. NCBI nr
Match: KAA0058803.1 (DNA-repair protein XRCC1 isoform X2 [Cucumis melo var. makuwa] >TYK10598.1 DNA-repair protein XRCC1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 728 bits (1878), Expect = 2.06e-264
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
           SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
           FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360
           DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI
Sbjct: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360

Query: 361 DVAFHKVVCKNS 372
           DVAFHKVVCKNS
Sbjct: 361 DVAFHKVVCKNS 372

[Close]

BLAST of IVF0025997 vs. NCBI nr
Match: XP_016902642.1 (PREDICTED: DNA-repair protein XRCC1 isoform X2 [Cucumis melo])

HSP 1 Score: 721 bits (1862), Expect = 5.67e-262
Identity = 369/372 (99.19%), Postives = 370/372 (99.46%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
            PVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
            KKPQKVVEKVSRSKPHESEIAQSR+SNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQKVVEKVSRSKPHESEIAQSRQSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360
           DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI
Sbjct: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360

Query: 361 DVAFHKVVCKNS 372
           DVAFHKVVCKNS
Sbjct: 361 DVAFHKVVCKNS 372

[Close]

BLAST of IVF0025997 vs. NCBI nr
Match: XP_016902641.1 (PREDICTED: DNA-repair protein XRCC1 isoform X1 [Cucumis melo])

HSP 1 Score: 702 bits (1812), Expect = 4.65e-254
Identity = 358/361 (99.17%), Postives = 359/361 (99.45%), Query Frame = 0


Query: 12  SAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLHRDF 71
           SAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE PVSSSLHRDF
Sbjct: 30  SAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGEGPVSSSLHRDF 89

Query: 72  SRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESD 131
           SRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESD
Sbjct: 90  SRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQVESD 149

Query: 132 CGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEFKKPQKVVEKV 191
           CGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE KKPQKVVEKV
Sbjct: 150 CGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSESKKPQKVVEKV 209

Query: 192 SRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAA 251
           SRSKPHESEIAQSR+SNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAA
Sbjct: 210 SRSKPHESEIAQSRQSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEIKKIAA 269

Query: 252 EGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISKDELCRHATDSK 311
           EGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISKDELCRHATDSK
Sbjct: 270 EGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISKDELCRHATDSK 329

Query: 312 SIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDVAFHKVVCKN 371
           SIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDVAFHKVVCKN
Sbjct: 330 SIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDVAFHKVVCKN 389

[Close]

BLAST of IVF0025997 vs. NCBI nr
Match: XP_004135823.1 (DNA-repair protein XRCC1 [Cucumis sativus] >XP_031745260.1 DNA-repair protein XRCC1 [Cucumis sativus] >KGN45337.1 hypothetical protein Csa_016136 [Cucumis sativus])

HSP 1 Score: 678 bits (1750), Expect = 6.64e-245
Identity = 347/372 (93.28%), Postives = 353/372 (94.89%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSS SVGNDLM+EAEEPKQ+KGNGE
Sbjct: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSASVGNDLMVEAEEPKQEKGNGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
            PVSSSLH DFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHHDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRR DLS EATQDIPS 
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRCDLSREATQDIPSP 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
            KKPQ+VVEK S  KPHE EIAQSRRSN SRDCFSPSKLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQRVVEKTSHLKPHEPEIAQSRRSNFSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQM EEWKFVPQVVEELAKLSNKKESISK
Sbjct: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLSNKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360
           +ELCR ATDSKSIYEVELNSLL+ SPERKKK  +KKESK G ETKEYDSDDTIEMTEEEI
Sbjct: 301 EELCRQATDSKSIYEVELNSLLESSPERKKKRIVKKESKNGHETKEYDSDDTIEMTEEEI 360

Query: 361 DVAFHKVVCKNS 372
           DVAFHKVVCKNS
Sbjct: 361 DVAFHKVVCKNS 372

[Close]

BLAST of IVF0025997 vs. NCBI nr
Match: XP_038899733.1 (DNA-repair protein XRCC1 [Benincasa hispida] >XP_038899734.1 DNA-repair protein XRCC1 [Benincasa hispida] >XP_038899736.1 DNA-repair protein XRCC1 [Benincasa hispida])

HSP 1 Score: 635 bits (1638), Expect = 7.14e-228
Identity = 324/372 (87.10%), Postives = 341/372 (91.67%), Query Frame = 0


Query: 1   MSNSKANEGGGSAKRSLPSWMSGKDDGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGE 60
           MS+SK NEGGG+AKRSLPSWMSGKDDGS+SRGKKPNSSGSVGND  +EA+EPKQ+KGNGE
Sbjct: 1   MSDSKTNEGGGNAKRSLPSWMSGKDDGSSSRGKKPNSSGSVGND--VEAKEPKQEKGNGE 60

Query: 61  SPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120
            PVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP
Sbjct: 61  GPVSSSLHRDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFP 120

Query: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSE 180
           NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRS+L+ EA Q +PS 
Sbjct: 121 NTPKFRQVESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSNLAREANQAVPSS 180

Query: 181 FKKPQKVVEKVSRSKPHESEIAQSRRSNLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEK 240
            KKPQK VEK SR KPHE EIAQSR  N SR+CFSP KLKKWAIDDYHKTLSWLESQEEK
Sbjct: 181 SKKPQKPVEKASRLKPHEQEIAQSREINSSRECFSPLKLKKWAIDDYHKTLSWLESQEEK 240

Query: 241 PDPSEIKKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKLSNKKESISK 300
           PDP EIKKIAAEGILTCLQDAIDSLHQNQDINQM EEWKFVPQVVEELAKL NKKESISK
Sbjct: 241 PDPCEIKKIAAEGILTCLQDAIDSLHQNQDINQMTEEWKFVPQVVEELAKLGNKKESISK 300

Query: 301 DELCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEI 360
           +ELCRHA+DSK IYE+ELNSLLD S ERKKK N+ KE K GR+ KEYDSDDTIEMTE+EI
Sbjct: 301 EELCRHASDSKRIYEIELNSLLDSSTERKKKPNVNKEPKNGRKPKEYDSDDTIEMTEDEI 360

Query: 361 DVAFHKVVCKNS 372
           D+AF KV CK S
Sbjct: 361 DIAFQKVACKKS 370

[Close]

BLAST of IVF0025997 vs. TAIR 10
Match: AT1G80420.1 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-91
Identity = 194/365 (53.15%), Postives = 245/365 (67.12%), Query Frame = 0


Query: 12  SAKRSLPSWMSGKD---DGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLH 71
           S KR+LPSWMS +D     S S  KKP   G        E           E    SS  
Sbjct: 2   SQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTE-----EHNSRNAPSNKSEHAEPSSNT 61

Query: 72  RDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQV 131
            +FS+L+EGVVFVLSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQV
Sbjct: 62  TEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQV 121

Query: 132 ESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEF-KKPQKV 191
           E++ GTI+SKEWI+ECYAQK+LVDIE YL++AGKPWR+S    +A ++      KKP+K 
Sbjct: 122 ETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQ 181

Query: 192 VEKVSRSKPHESEIAQSRRS-NLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEI 251
           VEK + ++   S  +++R + NL ++ F  +++KKWA DD  +T+SWLESQEEKP+P EI
Sbjct: 182 VEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEI 241

Query: 252 KKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKL--SNKKE--SISKDE 311
           K+IAAEG+LTCLQDAIDSL Q QDI  + E W FVP+VV+EL K+  S+KKE  + SK+E
Sbjct: 242 KRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEE 301

Query: 312 LCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDV 368
           +C+ A   K IYE EL           K G   ++    R    YDSD T+EMTEEEI++
Sbjct: 302 VCKQAKSWKKIYEAEL----------AKPG---EDESTSRVACGYDSDMTVEMTEEEIEL 348

[Close]

BLAST of IVF0025997 vs. TAIR 10
Match: AT1G80420.2 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-91
Identity = 194/365 (53.15%), Postives = 245/365 (67.12%), Query Frame = 0


Query: 12  SAKRSLPSWMSGKD---DGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLH 71
           S KR+LPSWMS +D     S S  KKP   G        E           E    SS  
Sbjct: 2   SQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTE-----EHNSRNAPSNKSEHAEPSSNT 61

Query: 72  RDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQV 131
            +FS+L+EGVVFVLSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQV
Sbjct: 62  TEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQV 121

Query: 132 ESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEF-KKPQKV 191
           E++ GTI+SKEWI+ECYAQK+LVDIE YL++AGKPWR+S    +A ++      KKP+K 
Sbjct: 122 ETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQ 181

Query: 192 VEKVSRSKPHESEIAQSRRS-NLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEI 251
           VEK + ++   S  +++R + NL ++ F  +++KKWA DD  +T+SWLESQEEKP+P EI
Sbjct: 182 VEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEI 241

Query: 252 KKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKL--SNKKE--SISKDE 311
           K+IAAEG+LTCLQDAIDSL Q QDI  + E W FVP+VV+EL K+  S+KKE  + SK+E
Sbjct: 242 KRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEE 301

Query: 312 LCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDV 368
           +C+ A   K IYE EL           K G   ++    R    YDSD T+EMTEEEI++
Sbjct: 302 VCKQAKSWKKIYEAEL----------AKPG---EDESTSRVACGYDSDMTVEMTEEEIEL 348

[Close]

BLAST of IVF0025997 vs. TAIR 10
Match: AT1G80420.3 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-91
Identity = 194/365 (53.15%), Postives = 245/365 (67.12%), Query Frame = 0


Query: 12  SAKRSLPSWMSGKD---DGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLH 71
           S KR+LPSWMS +D     S S  KKP   G        E           E    SS  
Sbjct: 2   SQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTE-----EHNSRNAPSNKSEHAEPSSNT 61

Query: 72  RDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQV 131
            +FS+L+EGVVFVLSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQV
Sbjct: 62  TEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQV 121

Query: 132 ESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEF-KKPQKV 191
           E++ GTI+SKEWI+ECYAQK+LVDIE YL++AGKPWR+S    +A ++      KKP+K 
Sbjct: 122 ETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANREKREHLSKKPEKQ 181

Query: 192 VEKVSRSKPHESEIAQSRRS-NLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEI 251
           VEK + ++   S  +++R + NL ++ F  +++KKWA DD  +T+SWLESQEEKP+P EI
Sbjct: 182 VEKKTETRGTPSTSSKNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEI 241

Query: 252 KKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKL--SNKKE--SISKDE 311
           K+IAAEG+LTCLQDAIDSL Q QDI  + E W FVP+VV+EL K+  S+KKE  + SK+E
Sbjct: 242 KRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEE 301

Query: 312 LCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDV 368
           +C+ A   K IYE EL           K G   ++    R    YDSD T+EMTEEEI++
Sbjct: 302 VCKQAKSWKKIYEAEL----------AKPG---EDESTSRVACGYDSDMTVEMTEEEIEL 348

[Close]

BLAST of IVF0025997 vs. TAIR 10
Match: AT1G80420.4 (BRCT domain-containing DNA repair protein )

HSP 1 Score: 317.4 bits (812), Expect = 1.5e-86
Identity = 189/365 (51.78%), Postives = 234/365 (64.11%), Query Frame = 0


Query: 12  SAKRSLPSWMSGKD---DGSTSRGKKPNSSGSVGNDLMIEAEEPKQQKGNGESPVSSSLH 71
           S KR+LPSWMS +D     S S  KKP   G        E           E    SS  
Sbjct: 2   SQKRNLPSWMSSRDPEITPSKSHCKKPKDEGPTE-----EHNSRNAPSNKSEHAEPSSNT 61

Query: 72  RDFSRLLEGVVFVLSGFVNPERSILRSQALEMGAQYKPDWNSDCTLLICAFPNTPKFRQV 131
            +FS+L+EGVVFVLSGFVNPERS LRSQAL MGA Y+PDWN+  TLLICAFPNTPKFRQV
Sbjct: 62  TEFSKLMEGVVFVLSGFVNPERSTLRSQALTMGATYQPDWNAGSTLLICAFPNTPKFRQV 121

Query: 132 ESDCGTIVSKEWISECYAQKRLVDIESYLLYAGKPWRRSDLSHEATQDIPSEFKKPQKVV 191
           E++ GTI+SKEWI+ECYAQK+LVDIE YL++AGKPWR+S    +A ++            
Sbjct: 122 ETNGGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSSPQDANRE------------ 181

Query: 192 EKVSRSKPHESEIAQSRRS--NLSRDCFSPSKLKKWAIDDYHKTLSWLESQEEKPDPSEI 251
           +  S        +  S RS  NL ++ F  +++KKWA DD  +T+SWLESQEEKP+P EI
Sbjct: 182 KSFSYCTASLRCLVDSNRSACNLVKEPFFVTEVKKWARDDLSQTISWLESQEEKPEPGEI 241

Query: 252 KKIAAEGILTCLQDAIDSLHQNQDINQMIEEWKFVPQVVEELAKL--SNKKE--SISKDE 311
           K+IAAEG+LTCLQDAIDSL Q QDI  + E W FVP+VV+EL K+  S+KKE  + SK+E
Sbjct: 242 KRIAAEGVLTCLQDAIDSLEQKQDIGSVTELWSFVPRVVKELGKMESSSKKENSTASKEE 301

Query: 312 LCRHATDSKSIYEVELNSLLDGSPERKKKGNIKKESKKGRETKEYDSDDTIEMTEEEIDV 368
           +C+ A   K IYE EL           K G   ++    R    YDSD T+EMTEEEI++
Sbjct: 302 VCKQAKSWKKIYEAEL----------AKPG---EDESTSRVACGYDSDMTVEMTEEEIEL 336

The following BLAST results are available for this feature:

BLAST of IVF0025997 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q24JK4	3.8e-90	53.15	DNA-repair protein XRCC1 OS=Arabidopsis thaliana OX=3702 GN=XRCC1 PE=1 SV=1	[more]
Q9ESZ0	1.5e-22	48.15	DNA repair protein XRCC1 OS=Rattus norvegicus OX=10116 GN=Xrcc1 PE=1 SV=2	[more]
O54935	5.8e-22	43.38	DNA repair protein XRCC1 OS=Cricetulus griseus OX=10029 GN=XRCC1 PE=2 SV=1	[more]
Q60596	2.9e-21	38.16	DNA repair protein XRCC1 OS=Mus musculus OX=10090 GN=Xrcc1 PE=1 SV=2	[more]
P18887	6.4e-21	35.48	DNA repair protein XRCC1 OS=Homo sapiens OX=9606 GN=XRCC1 PE=1 SV=2	[more]

BLAST of IVF0025997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7USA9	6.1e-208	100.00	DNA-repair protein XRCC1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4E338	4.4e-206	99.19	DNA-repair protein XRCC1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499750 PE=4...	[more]
A0A1S4E335	2.7e-200	99.17	DNA-repair protein XRCC1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499750 PE=4...	[more]
A0A0A0KAC1	4.3e-193	93.28	BRCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G440580 PE=4 S...	[more]
A0A6J1GQV2	6.0e-171	85.18	DNA-repair protein XRCC1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145664...	[more]

BLAST of IVF0025997 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058803.1	2.06e-264	100.00	DNA-repair protein XRCC1 isoform X2 [Cucumis melo var. makuwa] >TYK10598.1 DNA-r...	[more]
XP_016902642.1	5.67e-262	99.19	PREDICTED: DNA-repair protein XRCC1 isoform X2 [Cucumis melo]	[more]
XP_016902641.1	4.65e-254	99.17	PREDICTED: DNA-repair protein XRCC1 isoform X1 [Cucumis melo]	[more]
XP_004135823.1	6.64e-245	93.28	DNA-repair protein XRCC1 [Cucumis sativus] >XP_031745260.1 DNA-repair protein XR...	[more]
XP_038899733.1	7.14e-228	87.10	DNA-repair protein XRCC1 [Benincasa hispida] >XP_038899734.1 DNA-repair protein ...	[more]

BLAST of IVF0025997 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80420.1	2.7e-91	53.15	BRCT domain-containing DNA repair protein	[more]
AT1G80420.2	2.7e-91	53.15	BRCT domain-containing DNA repair protein	[more]
AT1G80420.3	2.7e-91	53.15	BRCT domain-containing DNA repair protein	[more]
AT1G80420.4	1.5e-86	51.78	BRCT domain-containing DNA repair protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001357	BRCT domain	SMART	SM00292	BRCT_7	coord: 72..148 e-value: 1.7E-8 score: 44.2
IPR001357	BRCT domain	PFAM	PF00533	BRCT	coord: 73..144 e-value: 5.5E-10 score: 39.5
IPR001357	BRCT domain	PROSITE	PS50172	BRCT	coord: 70..158 score: 17.512602
IPR036420	BRCT domain superfamily	GENE3D	3.40.50.10190	BRCT domain	coord: 68..158 e-value: 4.4E-26 score: 93.2
IPR036420	BRCT domain superfamily	SUPERFAMILY	52113	BRCT domain	coord: 68..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..349
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..352
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR11370:SF5	DNA REPAIR PROTEIN XRCC1	coord: 61..372
None	No IPR available	PANTHER	PTHR11370	DNA-REPAIR PROTEIN XRCC1	coord: 61..372
IPR045080	XRCC1, first (central) BRCT domain	CDD	cd17725	BRCT_XRCC1_rpt1	coord: 77..156 e-value: 5.60526E-48 score: 155.512

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025997.3	IVF0025997.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0000012	single strand break repair
molecular_function	GO:0003684	damaged DNA binding