IVF0025996 (gene) Melon (IVF77) v1

Overview


Name	IVF0025996
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DEAD-box ATP-dependent RNA helicase FANCM isoform X1
Location	chr03: 145918 .. 147092 (-)
RNA-Seq Expression	IVF0025996
Synteny	IVF0025996

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTAGGATGTGTCCAATGGCAGCAAGTAATCGAGAATTCACTGTTGACGACAACGACGACGACGACGTAAATGCCGTTCGCGTCCTTCCTCTTTCTTGTTAACTTACCTCATATGTCTGAGTCCTTTGACCTCTCTCCCATCCCATTTTCAGGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCTGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCACTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGGACTTCTCGCCAGTCTACACTTCACAGATTTATCATGAATGCAAAGTTTCAAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCAAAGACCTGGATATATCCAGGTCGTCTTTGAACTCCGGACTAATTTTGATTTCCATCATTTTGGGATTGTTATCCACGGACTCATTTTGTTCTATTCTCACCATGATTTTCTGTGAAACGTACTCCTCACTTACCCCAAGCAACTAGAACATGTAAAATACAAAAGATAACCTAAATTTGTCAACTGATTGTTTAGATCAACTACAAGCTTCTTCAGGTGGCATATGTTTTACTGCAAGAGTTGTAGTCCTATTTTGGAATGCAACGAGTCCAATTTACTTCCTCAAACCATATAGTTTTTGATAGCCTTTCTTTTGTTTCAACTCTAAGTTTGTTTAATATGCCAACATATTCCTTAGAATTTCTTGAGTTCACTGTTTGATATGTAGGCTATAAATTTCATGAAGTCAGTAGATAAGGAGATTTATTGCGTATATACAGTATTTTGCATCATTGACTGCTTGATGAATTATTTCTTTTCTTAGAAGTTAGGTGTTAATAGAATTATAATCTGATGTGATGTCAGTTAAATCATGTAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACGTTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTTATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGGGTAAGGGAAAACTTTTGCTATCTTGCTGA

mRNA sequence

ATGGCGTTTAGGATGTGTCCAATGGCAGCAAGTAATCGAGAATTCACTGTTGACGACAACGACGACGACGACGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCTGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCACTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGGACTTCTCGCCAGTCTACACTTCACAGATTTATCATGAATGCAAAGTTTCAAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCAAAGACCTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACGTTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTTATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGGGTAAGGGAAAACTTTTGCTATCTTGCTGA

Coding sequence (CDS)

ATGGCGTTTAGGATGTGTCCAATGGCAGCAAGTAATCGAGAATTCACTGTTGACGACAACGACGACGACGACGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCTGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCACTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGGACTTCTCGCCAGTCTACACTTCACAGATTTATCATGAATGCAAAGTTTCAAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCAAAGACCTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACGTTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTTATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGGGTAAGGGAAAACTTTTGCTATCTTGCTGA

Protein sequence

MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGKGKLLLSC

Homology

[Close]

BLAST of IVF0025996 vs. ExPASy Swiss-Prot
Match: I3XHK1 (DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.5e-38
Identity = 96/170 (56.47%), Postives = 117/170 (68.82%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDATAETP-ASFPLSEEN 76
           ++  ++D +FDWEAAVKEID+ACL   +++SS S H            TP A+ P++   
Sbjct: 7   IETIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSH-----------FTPLANPPITANL 66

Query: 77  EKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVE-DSVGLVDIDEEAAKTWIYPVN 136
            K    RQSTL +FI   + + +   V   V + G+ + D+  LV ID EAAKTWIYPVN
Sbjct: 67  TKPPAKRQSTLDKFIGRTEHKPENHQV---VSECGVNDNDNSPLVGIDPEAAKTWIYPVN 126

Query: 137 --VPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK 183
             VPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+GK
Sbjct: 127 GSVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGK 162

[Close]

BLAST of IVF0025996 vs. ExPASy Swiss-Prot
Match: Q8BGE5 (Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-19
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 125 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK 183
           A   WIYP N P+RDYQL I+++ALF NTLV LPTGLGKT IAAVVMYN++RWFP GK
Sbjct: 67  AGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 124

[Close]

BLAST of IVF0025996 vs. ExPASy Swiss-Prot
Match: Q8IYD8 (Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-19
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 125 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK 183
           A   WIYP N P+RDYQL I++ ALF NTLV LPTGLGKT IAAVVMYN++RWFP GK
Sbjct: 79  AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGK 136

[Close]

BLAST of IVF0025996 vs. ExPASy Swiss-Prot
Match: Q9UT23 (ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fml1 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-18
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 120 DIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP 179
           ++DE AA+ W+YP+NV  RDYQ  I + ALF N LVALPTGLGKT IAAVVM NY RWFP
Sbjct: 56  ELDESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFP 115

Query: 180 E 181
           +
Sbjct: 116 K 116

[Close]

BLAST of IVF0025996 vs. ExPASy Swiss-Prot
Match: Q7SDF3 (ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mph1 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.2e-16
Identity = 51/126 (40.48%), Postives = 67/126 (53.17%), Query Frame = 0


Query: 58  SSDATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVG 117
           +S  T     S P   ++ +R   RQ+TL    +    Q     V        +  +   
Sbjct: 75  ASKPTTSATTSRPSLAQSSQRKNLRQTTLWGGTLEEDAQPAPQAVSNRPFRADMPPEQPT 134

Query: 118 LVDIDEEAAKTWIYPVNV-PLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFR 177
             +ID E  KTW+YP+N+ P+RDYQ +I K  LF+NTLVALPTGLGKT IAA +M NY R
Sbjct: 135 HHEIDIEEMKTWVYPMNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATIMLNYIR 194

Query: 178 WFPEGK 183
           W    K
Sbjct: 195 WTKTAK 200

[Close]

BLAST of IVF0025996 vs. ExPASy TrEMBL
Match: A0A5D3C5Y0 (Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00300 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.8e-97
Identity = 185/188 (98.40%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 5   MCPMAASNREFTVDDNDDDD---DFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDA 64
           MCPMAASNREFTVDDNDDDD   DFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDA
Sbjct: 1   MCPMAASNREFTVDDNDDDDVNADFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDA 60

Query: 65  TAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDI 124
           TAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDI
Sbjct: 61  TAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDI 120

Query: 125 DEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEG 184
           DEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEG
Sbjct: 121 DEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEG 180

Query: 185 KGKLLLSC 190
           KGKLLLSC
Sbjct: 181 KGKLLLSC 188

[Close]

BLAST of IVF0025996 vs. ExPASy TrEMBL
Match: A0A1S3B3H7 (Fanconi anemia group M protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.5e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 183
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. ExPASy TrEMBL
Match: A0A1S4DTZ2 (Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.5e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 183
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. ExPASy TrEMBL
Match: A0A1S4DUR1 (Fanconi anemia group M protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.5e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 183
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. ExPASy TrEMBL
Match: A0A1S3B2A7 (Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.5e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 183
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. NCBI nr
Match: TYK06568.1 (Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa])

HSP 1 Score: 365 bits (938), Expect = 2.85e-127
Identity = 185/188 (98.40%), Postives = 185/188 (98.40%), Query Frame = 0


Query: 5   MCPMAASNREFTVDDNDDDD---DFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDA 64
           MCPMAASNREFTVDDNDDDD   DFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDA
Sbjct: 1   MCPMAASNREFTVDDNDDDDVNADFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDA 60

Query: 65  TAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDI 124
           TAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDI
Sbjct: 61  TAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDI 120

Query: 125 DEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEG 184
           DEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEG
Sbjct: 121 DEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEG 180

Query: 185 KGKLLLSC 189
           KGKLLLSC
Sbjct: 181 KGKLLLSC 188

[Close]

BLAST of IVF0025996 vs. NCBI nr
Match: XP_008441148.1 (PREDICTED: Fanconi anemia group M protein isoform X6 [Cucumis melo])

HSP 1 Score: 363 bits (933), Expect = 2.96e-115
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 182
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. NCBI nr
Match: XP_016899456.1 (PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo])

HSP 1 Score: 363 bits (933), Expect = 3.46e-115
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 182
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. NCBI nr
Match: XP_008441147.1 (PREDICTED: Fanconi anemia group M protein isoform X4 [Cucumis melo])

HSP 1 Score: 363 bits (933), Expect = 3.46e-115
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 182
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. NCBI nr
Match: XP_016899455.1 (PREDICTED: Fanconi anemia group M protein isoform X3 [Cucumis melo])

HSP 1 Score: 363 bits (933), Expect = 3.62e-115
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60
           MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120
           ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

Query: 181 GK 182
           GK
Sbjct: 181 GK 182

[Close]

BLAST of IVF0025996 vs. TAIR 10
Match: AT1G35530.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-38
Identity = 94/168 (55.95%), Postives = 115/168 (68.45%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDATAETP-ASFPLSEEN 76
           ++  ++D +FDWEAAVKEID+ACL   +++SS S H            TP A+ P++   
Sbjct: 7   IETIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSH-----------FTPLANPPITANL 66

Query: 77  EKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVE-DSVGLVDIDEEAAKTWIYPVN 136
            K    RQSTL +FI   + + +   V   V + G+ + D+  LV ID EAAKTWIYP  
Sbjct: 67  TKPPAKRQSTLDKFIGRTEHKPENHQV---VSECGVNDNDNSPLVGIDPEAAKTWIYPGF 126

Query: 137 VPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK 183
           VPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+GK
Sbjct: 127 VPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGK 160

[Close]

BLAST of IVF0025996 vs. TAIR 10
Match: AT1G35530.2 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-38
Identity = 94/168 (55.95%), Postives = 115/168 (68.45%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDATAETP-ASFPLSEEN 76
           ++  ++D +FDWEAAVKEID+ACL   +++SS S H            TP A+ P++   
Sbjct: 7   IETIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSH-----------FTPLANPPITANL 66

Query: 77  EKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVE-DSVGLVDIDEEAAKTWIYPVN 136
            K    RQSTL +FI   + + +   V   V + G+ + D+  LV ID EAAKTWIYP  
Sbjct: 67  TKPPAKRQSTLDKFIGRTEHKPENHQV---VSECGVNDNDNSPLVGIDPEAAKTWIYPGF 126

Query: 137 VPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEGK 183
           VPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+GK
Sbjct: 127 VPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGK 160

[Close]

BLAST of IVF0025996 vs. TAIR 10
Match: AT1G36020.1 (BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 0


Query: 17  VDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSDATAETPASFPLSEENE 76
           ++  ++D +FDWEAAVKEID+ACL       + + HP                P++E   
Sbjct: 17  IETIEEDGEFDWEAAVKEIDLACL------KTTNAHP----------------PITENLT 76

Query: 77  KRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIY 132
           K    RQSTL +FI   + + K  + +   +  G   D+  LV+ID EAAKTWIY
Sbjct: 77  KPPAKRQSTLDKFI--GRTEPKPENHQVVSECGGNDNDNSLLVEIDPEAAKTWIY 107

The following BLAST results are available for this feature:

BLAST of IVF0025996 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
I3XHK1	8.5e-38	56.47	DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FAN...	[more]
Q8BGE5	5.2e-19	72.41	Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV...	[more]
Q8IYD8	6.8e-19	72.41	Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2	[more]
Q9UT23	4.4e-18	67.21	ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q7SDF3	3.2e-16	40.48	ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR2...	[more]

BLAST of IVF0025996 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5Y0	3.8e-97	98.40	Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B3H7	6.5e-97	100.00	Fanconi anemia group M protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S4DTZ2	6.5e-97	100.00	Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S4DUR1	6.5e-97	100.00	Fanconi anemia group M protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]
A0A1S3B2A7	6.5e-97	100.00	Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC10348537...	[more]

BLAST of IVF0025996 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06568.1	2.85e-127	98.40	Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa]	[more]
XP_008441148.1	2.96e-115	100.00	PREDICTED: Fanconi anemia group M protein isoform X6 [Cucumis melo]	[more]
XP_016899456.1	3.46e-115	100.00	PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo]	[more]
XP_008441147.1	3.46e-115	100.00	PREDICTED: Fanconi anemia group M protein isoform X4 [Cucumis melo]	[more]
XP_016899455.1	3.62e-115	100.00	PREDICTED: Fanconi anemia group M protein isoform X3 [Cucumis melo]	[more]

BLAST of IVF0025996 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35530.1	1.4e-38	55.95	DEAD/DEAH box RNA helicase family protein	[more]
AT1G35530.2	1.4e-38	55.95	DEAD/DEAH box RNA helicase family protein	[more]
AT1G36020.1	1.1e-08	36.52	BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 138..186 e-value: 1.5E-14 score: 56.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 119..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..69
None	No IPR available	PANTHER	PTHR14025	FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER	coord: 25..182
IPR039686	FANCM/Mph1-like	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 25..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025996.2	IVF0025996.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006281	DNA repair
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity