Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCGAAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTAGAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCAGTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA
mRNA sequence
ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCGAAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTAGAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCAGTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA
Coding sequence (CDS)
ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCGAAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTAGAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCAGTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA
Protein sequence
MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Homology
BLAST of IVF0025902 vs. ExPASy TrEMBL
Match:
A0A5D3DYN4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001990 PE=4 SV=1)
HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query: 1 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR
Sbjct: 582 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 641
Query: 61 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ
Sbjct: 642 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 701
Query: 121 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 170
CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Sbjct: 702 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 750
BLAST of IVF0025902 vs. ExPASy TrEMBL
Match:
A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1)
HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 134/171 (78.36%), Postives = 141/171 (82.46%), Query Frame = 0
Query: 1 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
MLQ RRSSS+IC N+E RRLKYV KKI +V+ KKIVVSNMLQPRR
Sbjct: 556 MLQPRRSSSKICYNQEDRRLKYVAAKKI---------------FVSTKKIVVSNMLQPRR 615
Query: 61 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
SSSLMCYSREDHHLHLLT V IE IIIFIFSHVLQPRG SSSFFHTCCTLEDLHLHLHFQ
Sbjct: 616 SSSLMCYSREDHHLHLLTYVAIEGIIIFIFSHVLQPRG-SSSFFHTCCTLEDLHLHLHFQ 675
Query: 121 CSAAEAF--LIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 170
CS AEAF LIFIFNVAR ++SSSSSLM+YSRNDHHLHGP SLSSIRAQQK
Sbjct: 676 CSKAEAFLMLIFIFNVARCKQSSSSSLMRYSRNDHHLHGPLSLSSIRAQQK 710
BLAST of IVF0025902 vs. ExPASy TrEMBL
Match:
A0A5A7UC34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001950 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 2.8e-27
Identity = 92/190 (48.42%), Postives = 109/190 (57.37%), Query Frame = 0
Query: 1 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAA-------KKIVVS 60
ML RRSS + + LKY +KI+VS + +R+ R KYVAA KKIVVS
Sbjct: 140 MLLPRRSSLKYVAAEKIVVLKYGAAEKIIVS-IYYNREDRRLKYVAAKKIFVSTKKIVVS 199
Query: 61 NMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH--------------------- 120
N+LQPRRSSS MC +REDHHLHLLTCVVIEEIIIFIFSH
Sbjct: 200 NVLQPRRSSSRMCCNREDHHLHLLTCVVIEEIIIFIFSHRGRGIPHLHLQCGKAQKIIIF 259
Query: 121 -VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSL 156
V QP+ SSSS D HLHL + QC E +IFIFN+ ++R+ SSSS
Sbjct: 260 KVAQPKRSSSS----SLMRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSS 319
BLAST of IVF0025902 vs. ExPASy TrEMBL
Match:
A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)
HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23
Identity = 68/111 (61.26%), Postives = 77/111 (69.37%), Query Frame = 0
Query: 51 VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTC 110
+ S++LQPR SSS MCYSRED HLHLLTCV E IIIFIFSH+LQ RGSSSS H C
Sbjct: 106 IFSHVLQPRGSSSSSSYMCYSREDDHLHLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMC 165
Query: 111 CTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSLMQYSRNDHHLH 157
C+ ED HLHL F C A E +I IF+ + + SS SS M SR DHHLH
Sbjct: 166 CSREDHHLHL-FTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLH 215
BLAST of IVF0025902 vs. ExPASy TrEMBL
Match:
A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 77/169 (45.56%), Postives = 96/169 (56.80%), Query Frame = 0
Query: 28 IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPR---RSSSLMCYSREDHHLHLLTCVV 87
I+ S+ SS+ + AK+I++ S++LQPR SSS +C SREDHHLHLLTCV
Sbjct: 515 IIASSSLSSKANFIVAGLRAKRIIIFIFSHVLQPRGSSSSSSHICCSREDHHLHLLTCVA 574
Query: 88 IEEIIIFIFSHVLQPRGSSSSFFH-------------------------TCCTLEDLHL- 147
E IIFIFSHVLQ RGSSSS FH CC+ +DLHL
Sbjct: 575 AERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGSPSSSSPMCCSQKDLHLR 634
Query: 148 ------HLH-FQCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH 157
HLH C+AA+ +IFIFN+ ++R S SSSS + SR D HLH
Sbjct: 635 FSQEDHHLHLLTCAAAKRIIIFIFNLLQQRGSLSSSSHIYCSREDLHLH 683
BLAST of IVF0025902 vs. NCBI nr
Match:
KAA0048558.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK28360.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 333 bits (855), Expect = 1.33e-107
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query: 1 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR
Sbjct: 582 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 641
Query: 61 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ
Sbjct: 642 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 701
Query: 121 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 169
CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Sbjct: 702 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 750
BLAST of IVF0025902 vs. NCBI nr
Match:
KAA0061611.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 239 bits (611), Expect = 7.20e-72
Identity = 134/171 (78.36%), Postives = 141/171 (82.46%), Query Frame = 0
Query: 1 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
MLQ RRSSS+IC N+E RRLKYV KKI +V+ KKIVVSNMLQPRR
Sbjct: 556 MLQPRRSSSKICYNQEDRRLKYVAAKKI---------------FVSTKKIVVSNMLQPRR 615
Query: 61 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
SSSLMCYSREDHHLHLLT V IE IIIFIFSHVLQPRGSSS FFHTCCTLEDLHLHLHFQ
Sbjct: 616 SSSLMCYSREDHHLHLLTYVAIEGIIIFIFSHVLQPRGSSS-FFHTCCTLEDLHLHLHFQ 675
Query: 121 CSAAEAFL--IFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 169
CS AEAFL IFIFNVAR ++SSSSSLM+YSRNDHHLHGP SLSSIRAQQK
Sbjct: 676 CSKAEAFLMLIFIFNVARCKQSSSSSLMRYSRNDHHLHGPLSLSSIRAQQK 710
BLAST of IVF0025902 vs. NCBI nr
Match:
KAA0051997.1 (hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK04562.1 hypothetical protein E5676_scaffold409G001950 [Cucumis melo var. makuwa])
HSP 1 Score: 130 bits (327), Expect = 7.76e-33
Identity = 92/190 (48.42%), Postives = 109/190 (57.37%), Query Frame = 0
Query: 1 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKI-------VVS 60
ML RRSS + + LKY +KI+VS + +R+ R KYVAAKKI VVS
Sbjct: 140 MLLPRRSSLKYVAAEKIVVLKYGAAEKIIVS-IYYNREDRRLKYVAAKKIFVSTKKIVVS 199
Query: 61 NMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH--------------------- 120
N+LQPRRSSS MC +REDHHLHLLTCVVIEEIIIFIFSH
Sbjct: 200 NVLQPRRSSSRMCCNREDHHLHLLTCVVIEEIIIFIFSHRGRGIPHLHLQCGKAQKIIIF 259
Query: 121 -VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSL 155
V QP+ SSSS D HLHL + QC E +IFIFN+ ++R+ SSSS
Sbjct: 260 KVAQPKRSSSSSLMR----NDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSS 319
BLAST of IVF0025902 vs. NCBI nr
Match:
KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 118 bits (295), Expect = 2.68e-27
Identity = 68/111 (61.26%), Postives = 77/111 (69.37%), Query Frame = 0
Query: 51 VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTC 110
+ S++LQPR SSS MCYSRED HLHLLTCV E IIIFIFSH+LQ RGSSSS H C
Sbjct: 106 IFSHVLQPRGSSSSSSYMCYSREDDHLHLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMC 165
Query: 111 CTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSLMQYSRNDHHLH 156
C+ ED HLHL F C A E +I IF+ + + SS SS M SR DHHLH
Sbjct: 166 CSREDHHLHL-FTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLH 215
BLAST of IVF0025902 vs. NCBI nr
Match:
TYK02186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 108 bits (270), Expect = 7.87e-24
Identity = 77/169 (45.56%), Postives = 96/169 (56.80%), Query Frame = 0
Query: 28 IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPRRSSSL---MCYSREDHHLHLLTCVV 87
I+ S+ SS+ + AK+I++ S++LQPR SSS +C SREDHHLHLLTCV
Sbjct: 515 IIASSSLSSKANFIVAGLRAKRIIIFIFSHVLQPRGSSSSSSHICCSREDHHLHLLTCVA 574
Query: 88 IEEIIIFIFSHVLQPRGSSSSFFHTC-------------------------CTLEDLHL- 147
E IIFIFSHVLQ RGSSSS FH C C+ +DLHL
Sbjct: 575 AERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGSPSSSSPMCCSQKDLHLR 634
Query: 148 ------HLHF-QCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH 156
HLH C+AA+ +IFIFN+ ++R S SSSS + SR D HLH
Sbjct: 635 FSQEDHHLHLLTCAAAKRIIIFIFNLLQQRGSLSSSSHIYCSREDLHLH 683
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DYN4 | 1.3e-88 | 100.00 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7V7A0 | 3.3e-60 | 78.36 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7UC34 | 2.8e-27 | 48.42 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TBX4 | 2.5e-23 | 61.26 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BVC5 | 2.0e-20 | 45.56 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |
KAA0048558.1 | 1.33e-107 | 100.00 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK28360.1 retrotranspos... | [more] |
KAA0061611.1 | 7.20e-72 | 78.36 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0051997.1 | 7.76e-33 | 48.42 | hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK0456... | [more] |
KAA0039121.1 | 2.68e-27 | 61.26 | hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa] | [more] |
TYK02186.1 | 7.87e-24 | 45.56 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |