IVF0025902 (gene) Melon (IVF77) v1

Overview
NameIVF0025902
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr06: 11488958 .. 11489467 (-)
RNA-Seq ExpressionIVF0025902
SyntenyIVF0025902
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCGAAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTAGAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCAGTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA

mRNA sequence

ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCGAAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTAGAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCAGTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA

Coding sequence (CDS)

ATGTTGCAGTCGAGAAGGTCGTCGTCTCGAATATGTTGTAATCGAGAATGTCGTCGTCTCAAATATGTTACAACCAAGAAGATCGTCGTCTCAAATATGTGTAGCAGCCGAAAATGTCATCGTTTCAAATATGTTGCAGCCAAAAAGATCGTCGTCTCAAATATGTTACAGCCAAGAAGATCATCGTCTCTAATGTGTTACAGCCGAGAGGATCATCATCTTCATCTTCTTACATGTGTTGTAATCGAGGAGATCATCATCTTCATCTTCTCACATGTGTTGCAGCCAAGAGGATCTTCATCTTCATTTTTTCACACATGTTGCACTTTAGAGGATCTTCATCTTCATCTTCATTTTCAATGTAGCGCGGCCGAGGCATTCCTCATCTTCATCTTCAATGTGGCACGGCGCAGAAAATCATCATCTTCATCTTTAATGCAGTATAGTAGAAACGATCATCATCTTCATGGACCATCATCTCTATCTTCAATACGGGCACAACAGAAATGA

Protein sequence

MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQCSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Homology
BLAST of IVF0025902 vs. ExPASy TrEMBL
Match: A0A5D3DYN4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001990 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
           MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR
Sbjct: 582 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 641

Query: 61  SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
           SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ
Sbjct: 642 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 701

Query: 121 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 170
           CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Sbjct: 702 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 750

BLAST of IVF0025902 vs. ExPASy TrEMBL
Match: A0A5A7V7A0 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001760 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 134/171 (78.36%), Postives = 141/171 (82.46%), Query Frame = 0

Query: 1   MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
           MLQ RRSSS+IC N+E RRLKYV  KKI               +V+ KKIVVSNMLQPRR
Sbjct: 556 MLQPRRSSSKICYNQEDRRLKYVAAKKI---------------FVSTKKIVVSNMLQPRR 615

Query: 61  SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
           SSSLMCYSREDHHLHLLT V IE IIIFIFSHVLQPRG SSSFFHTCCTLEDLHLHLHFQ
Sbjct: 616 SSSLMCYSREDHHLHLLTYVAIEGIIIFIFSHVLQPRG-SSSFFHTCCTLEDLHLHLHFQ 675

Query: 121 CSAAEAF--LIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 170
           CS AEAF  LIFIFNVAR ++SSSSSLM+YSRNDHHLHGP SLSSIRAQQK
Sbjct: 676 CSKAEAFLMLIFIFNVARCKQSSSSSLMRYSRNDHHLHGPLSLSSIRAQQK 710

BLAST of IVF0025902 vs. ExPASy TrEMBL
Match: A0A5A7UC34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001950 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.8e-27
Identity = 92/190 (48.42%), Postives = 109/190 (57.37%), Query Frame = 0

Query: 1   MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAA-------KKIVVS 60
           ML  RRSS +     +   LKY   +KI+VS +  +R+  R KYVAA       KKIVVS
Sbjct: 140 MLLPRRSSLKYVAAEKIVVLKYGAAEKIIVS-IYYNREDRRLKYVAAKKIFVSTKKIVVS 199

Query: 61  NMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH--------------------- 120
           N+LQPRRSSS MC +REDHHLHLLTCVVIEEIIIFIFSH                     
Sbjct: 200 NVLQPRRSSSRMCCNREDHHLHLLTCVVIEEIIIFIFSHRGRGIPHLHLQCGKAQKIIIF 259

Query: 121 -VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSL 156
            V QP+ SSSS         D HLHL      + QC   E  +IFIFN+ ++R+ SSSS 
Sbjct: 260 KVAQPKRSSSS----SLMRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSS 319

BLAST of IVF0025902 vs. ExPASy TrEMBL
Match: A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23
Identity = 68/111 (61.26%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 51  VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTC 110
           + S++LQPR    SSS MCYSRED HLHLLTCV  E IIIFIFSH+LQ RGSSSS  H C
Sbjct: 106 IFSHVLQPRGSSSSSSYMCYSREDDHLHLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMC 165

Query: 111 CTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSLMQYSRNDHHLH 157
           C+ ED HLHL F C A E  +I IF+  +  +  SS SS M  SR DHHLH
Sbjct: 166 CSREDHHLHL-FTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLH 215

BLAST of IVF0025902 vs. ExPASy TrEMBL
Match: A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 77/169 (45.56%), Postives = 96/169 (56.80%), Query Frame = 0

Query: 28  IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPR---RSSSLMCYSREDHHLHLLTCVV 87
           I+ S+  SS+       + AK+I++   S++LQPR    SSS +C SREDHHLHLLTCV 
Sbjct: 515 IIASSSLSSKANFIVAGLRAKRIIIFIFSHVLQPRGSSSSSSHICCSREDHHLHLLTCVA 574

Query: 88  IEEIIIFIFSHVLQPRGSSSSFFH-------------------------TCCTLEDLHL- 147
            E  IIFIFSHVLQ RGSSSS FH                          CC+ +DLHL 
Sbjct: 575 AERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGSPSSSSPMCCSQKDLHLR 634

Query: 148 ------HLH-FQCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH 157
                 HLH   C+AA+  +IFIFN+ ++R S SSSS +  SR D HLH
Sbjct: 635 FSQEDHHLHLLTCAAAKRIIIFIFNLLQQRGSLSSSSHIYCSREDLHLH 683

BLAST of IVF0025902 vs. NCBI nr
Match: KAA0048558.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK28360.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 333 bits (855), Expect = 1.33e-107
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0

Query: 1   MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
           MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR
Sbjct: 582 MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 641

Query: 61  SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
           SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ
Sbjct: 642 SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 701

Query: 121 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 169
           CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK
Sbjct: 702 CSAAEAFLIFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 750

BLAST of IVF0025902 vs. NCBI nr
Match: KAA0061611.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (611), Expect = 7.20e-72
Identity = 134/171 (78.36%), Postives = 141/171 (82.46%), Query Frame = 0

Query: 1   MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKIVVSNMLQPRR 60
           MLQ RRSSS+IC N+E RRLKYV  KKI               +V+ KKIVVSNMLQPRR
Sbjct: 556 MLQPRRSSSKICYNQEDRRLKYVAAKKI---------------FVSTKKIVVSNMLQPRR 615

Query: 61  SSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTCCTLEDLHLHLHFQ 120
           SSSLMCYSREDHHLHLLT V IE IIIFIFSHVLQPRGSSS FFHTCCTLEDLHLHLHFQ
Sbjct: 616 SSSLMCYSREDHHLHLLTYVAIEGIIIFIFSHVLQPRGSSS-FFHTCCTLEDLHLHLHFQ 675

Query: 121 CSAAEAFL--IFIFNVARRRKSSSSSLMQYSRNDHHLHGPSSLSSIRAQQK 169
           CS AEAFL  IFIFNVAR ++SSSSSLM+YSRNDHHLHGP SLSSIRAQQK
Sbjct: 676 CSKAEAFLMLIFIFNVARCKQSSSSSLMRYSRNDHHLHGPLSLSSIRAQQK 710

BLAST of IVF0025902 vs. NCBI nr
Match: KAA0051997.1 (hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK04562.1 hypothetical protein E5676_scaffold409G001950 [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 7.76e-33
Identity = 92/190 (48.42%), Postives = 109/190 (57.37%), Query Frame = 0

Query: 1   MLQSRRSSSRICCNRECRRLKYVTTKKIVVSNMCSSRKCHRFKYVAAKKI-------VVS 60
           ML  RRSS +     +   LKY   +KI+VS +  +R+  R KYVAAKKI       VVS
Sbjct: 140 MLLPRRSSLKYVAAEKIVVLKYGAAEKIIVS-IYYNREDRRLKYVAAKKIFVSTKKIVVS 199

Query: 61  NMLQPRRSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSH--------------------- 120
           N+LQPRRSSS MC +REDHHLHLLTCVVIEEIIIFIFSH                     
Sbjct: 200 NVLQPRRSSSRMCCNREDHHLHLLTCVVIEEIIIFIFSHRGRGIPHLHLQCGKAQKIIIF 259

Query: 121 -VLQPRGSSSSFFHTCCTLEDLHLHL------HFQCSAAEAFLIFIFNVARRRKSSSSSL 155
            V QP+ SSSS         D HLHL      + QC   E  +IFIFN+ ++R+ SSSS 
Sbjct: 260 KVAQPKRSSSSSLMR----NDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSS 319

BLAST of IVF0025902 vs. NCBI nr
Match: KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 2.68e-27
Identity = 68/111 (61.26%), Postives = 77/111 (69.37%), Query Frame = 0

Query: 51  VVSNMLQPR---RSSSLMCYSREDHHLHLLTCVVIEEIIIFIFSHVLQPRGSSSSFFHTC 110
           + S++LQPR    SSS MCYSRED HLHLLTCV  E IIIFIFSH+LQ RGSSSS  H C
Sbjct: 106 IFSHVLQPRGSSSSSSYMCYSREDDHLHLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMC 165

Query: 111 CTLEDLHLHLHFQCSAAEAFLIFIFN--VARRRKSSSSSLMQYSRNDHHLH 156
           C+ ED HLHL F C A E  +I IF+  +  +  SS SS M  SR DHHLH
Sbjct: 166 CSREDHHLHL-FTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLH 215

BLAST of IVF0025902 vs. NCBI nr
Match: TYK02186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 7.87e-24
Identity = 77/169 (45.56%), Postives = 96/169 (56.80%), Query Frame = 0

Query: 28  IVVSNMCSSRKCHRFKYVAAKKIVV---SNMLQPRRSSSL---MCYSREDHHLHLLTCVV 87
           I+ S+  SS+       + AK+I++   S++LQPR SSS    +C SREDHHLHLLTCV 
Sbjct: 515 IIASSSLSSKANFIVAGLRAKRIIIFIFSHVLQPRGSSSSSSHICCSREDHHLHLLTCVA 574

Query: 88  IEEIIIFIFSHVLQPRGSSSSFFHTC-------------------------CTLEDLHL- 147
            E  IIFIFSHVLQ RGSSSS FH C                         C+ +DLHL 
Sbjct: 575 AERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGSPSSSSPMCCSQKDLHLR 634

Query: 148 ------HLHF-QCSAAEAFLIFIFNVARRRKS-SSSSLMQYSRNDHHLH 156
                 HLH   C+AA+  +IFIFN+ ++R S SSSS +  SR D HLH
Sbjct: 635 FSQEDHHLHLLTCAAAKRIIIFIFNLLQQRGSLSSSSHIYCSREDLHLH 683

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DYN41.3e-88100.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7V7A03.3e-6078.36Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7UC342.8e-2748.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TBX42.5e-2361.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BVC52.0e-2045.56Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
KAA0048558.11.33e-107100.00retrotransposon gag protein [Cucumis melo var. makuwa] >TYK28360.1 retrotranspos... [more]
KAA0061611.17.20e-7278.36retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0051997.17.76e-3348.42hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK0456... [more]
KAA0039121.12.68e-2761.26hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa][more]
TYK02186.17.87e-2445.56retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..169

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025902.1IVF0025902.1mRNA