IVF0025811 (gene) Melon (IVF77) v1

Overview
NameIVF0025811
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass, expressed
Locationchr05: 7835782 .. 7836057 (-)
RNA-Seq ExpressionIVF0025811
SyntenyIVF0025811
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGACTCAGTTTTTCTATCGTCGAGTAAAAAGAGGTCCTGCAACGGTTTCTTTGTTTTGTATTGGTCATACATGCTTTGAGCTTCGAAACTCCTACTTTGAGGACTTTAGTCTACACTTTTGGCATCGTCTCTCACCCATTTTTCGAAAGAATAGGTTGGGAAGCGAGCTCGTTGGAAAGAGAACTAATGTGCAACCCGAAACGATCGAAACGATGGACAATGCTCTTCCAACGTGTGGCGAACACTCATCCGGTGTCAGAAACAAGTGA

mRNA sequence

ATGCCTCGGACTCAGTTTTTCTATCGTCGAGTAAAAAGAGGTCCTGCAACGGTTTCTTTGTTTTGTATTGGTCATACATGCTTTGAGCTTCGAAACTCCTACTTTGAGGACTTTAGTCTACACTTTTGGCATCGTCTCTCACCCATTTTTCGAAAGAATAGGTTGGGAAGCGAGCTCGTTGGAAAGAGAACTAATGTGCAACCCGAAACGATCGAAACGATGGACAATGCTCTTCCAACGTGTGGCGAACACTCATCCGGTGTCAGAAACAAGTGA

Coding sequence (CDS)

ATGCCTCGGACTCAGTTTTTCTATCGTCGAGTAAAAAGAGGTCCTGCAACGGTTTCTTTGTTTTGTATTGGTCATACATGCTTTGAGCTTCGAAACTCCTACTTTGAGGACTTTAGTCTACACTTTTGGCATCGTCTCTCACCCATTTTTCGAAAGAATAGGTTGGGAAGCGAGCTCGTTGGAAAGAGAACTAATGTGCAACCCGAAACGATCGAAACGATGGACAATGCTCTTCCAACGTGTGGCGAACACTCATCCGGTGTCAGAAACAAGTGA

Protein sequence

MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSGVRNK
Homology
BLAST of IVF0025811 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 54/109 (49.54%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 5    QFFYRRVKRGPATVSLFCIGHTCFELRNSY---------------------------FED 64
            Q+FYRRVK  P  V LFC+GH  FELR+SY                            E 
Sbjct: 944  QYFYRRVKSVPTRVCLFCVGHKRFELRDSYPRTLVYIPGIVPHPFSQSIALRATGLNSEY 1003

Query: 65   FSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS 87
            FSL+FWHR SP+F K R  SE++  RT VQPETIE M NALPT GE SS
Sbjct: 1004 FSLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANALPTSGERSS 1052

BLAST of IVF0025811 vs. ExPASy TrEMBL
Match: A0A5D3CKZ2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00020 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 1  MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELV 60
          MP T+F Y   K GP+TV LF IGH CFEL +SYFE+F+LH WH  S I+ K R GSEL 
Sbjct: 25 MPLTKFLYLEAKSGPSTVPLFRIGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSELG 84

Query: 61 GKRTNVQP 69
          G++    P
Sbjct: 85 GRKKRSLP 92

BLAST of IVF0025811 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 36 EDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS 87
          +DFSLH WH  SPIF + R GSELVG+RT VQ  TIE + NALPT GE SS
Sbjct: 20 KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERSS 70

BLAST of IVF0025811 vs. ExPASy TrEMBL
Match: A0A5A7U1Q6 (Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00650 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 48/143 (33.57%), Postives = 55/143 (38.46%), Query Frame = 0

Query: 1   MPRTQFFYRRVKRGPATVSLFC-------IGHTCFEL----------------------- 60
           MP++QFFYR VK G  TVSL C       +GH    L                       
Sbjct: 1   MPQSQFFYRGVKSGTGTVSLLCWSAVLRILGHILRGLQSTFLVSSLIFSSIGQEVSSLDG 60

Query: 61  ---------------------------RNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKR 87
                                      +NSY EDFSLH W+  S +  K    +EL G R
Sbjct: 61  ELSASSFKTHTPRTLVYIPCIVPHSFSQNSYSEDFSLHSWNCPSLVVLKYSSRNELGGGR 120

BLAST of IVF0025811 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-05
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 28  FELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSG 87
           FEL++S  +DFSLH  HR S +F K R G ELV +RT VQ   IE M NAL   G  S G
Sbjct: 374 FELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMSGASSFG 433

Query: 88  VR 90
            R
Sbjct: 434 TR 435

BLAST of IVF0025811 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 3.73e-21
Identity = 54/109 (49.54%), Postives = 61/109 (55.96%), Query Frame = 0

Query: 5    QFFYRRVKRGPATVSLFCIGHTCFELRNSY---------------------------FED 64
            Q+FYRRVK  P  V LFC+GH  FELR+SY                            E 
Sbjct: 944  QYFYRRVKSVPTRVCLFCVGHKRFELRDSYPRTLVYIPGIVPHPFSQSIALRATGLNSEY 1003

Query: 65   FSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS 86
            FSL+FWHR SP+F K R  SE++  RT VQPETIE M NALPT GE SS
Sbjct: 1004 FSLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANALPTSGERSS 1052

BLAST of IVF0025811 vs. NCBI nr
Match: KAA0051945.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 1.22e-16
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 1  MPRTQFFYRRVKRGPATVSLFCIGHTCFELRNSYFEDFSLHFWHRLSPIFRKNRLGSELV 60
          MP T+F Y   K GP+TV LF IGH CFEL +SYFE+F+LH WH  S I+ K R GSEL 
Sbjct: 25 MPLTKFLYLEAKSGPSTVPLFRIGHKCFELWDSYFENFNLHSWHWPSHIYSKYRSGSELG 84

Query: 61 GKRTNVQP 68
          G++    P
Sbjct: 85 GRKKRSLP 92

BLAST of IVF0025811 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.74e-12
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 36 EDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSS 86
          +DFSLH WH  SPIF + R GSELVG+RT VQ  TIE + NALPT GE SS
Sbjct: 20 KDFSLHCWHHSSPIFPRYRSGSELVGRRTKVQSGTIEKIANALPTSGERSS 70

BLAST of IVF0025811 vs. NCBI nr
Match: KAA0047409.1 (retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK14084.1 retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 3.51e-08
Identity = 48/143 (33.57%), Postives = 55/143 (38.46%), Query Frame = 0

Query: 1   MPRTQFFYRRVKRGPATVSLFC-------IGHTCFELR---------------------- 60
           MP++QFFYR VK G  TVSL C       +GH    L+                      
Sbjct: 1   MPQSQFFYRGVKSGTGTVSLLCWSAVLRILGHILRGLQSTFLVSSLIFSSIGQEVSSLDG 60

Query: 61  ----------------------------NSYFEDFSLHFWHRLSPIFRKNRLGSELVGKR 86
                                       NSY EDFSLH W+  S +  K    +EL G R
Sbjct: 61  ELSASSFKTHTPRTLVYIPCIVPHSFSQNSYSEDFSLHSWNCPSLVVLKYSSRNELGGGR 120

BLAST of IVF0025811 vs. NCBI nr
Match: KAA0065516.1 (uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.71e-07
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 0

Query: 28  FELRNSYFEDFSLHFWHRLSPIFRKNRLGSELVGKRTNVQPETIETMDNALPTCGEHSSG 87
           FEL++S  +DFSLH  HR S +F K R G ELV +RT VQ   IE M NAL   G  S G
Sbjct: 374 FELQDSSSKDFSLHSLHRPSLVFAKYRSGCELVWERTKVQHGAIEKMANALRMSGASSFG 433

Query: 88  VR 89
            R
Sbjct: 434 TR 435

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VEB13.2e-1749.54Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo... [more]
A0A5D3CKZ23.1e-1255.88Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3BG855.4e-0966.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U1Q64.3e-0633.57Retrotransposon protein, putative, Ty3-gypsy sub-class OS=Cucumis melo var. maku... [more]
A0A5A7VGQ52.1e-0553.23Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0065520.13.73e-2149.54retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v... [more]
KAA0051945.11.22e-1655.88pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12215... [more]
TYJ98800.17.74e-1266.67uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa][more]
KAA0047409.13.51e-0833.57retrotransposon protein, putative, Ty3-gypsy sub-class [Cucumis melo var. makuwa... [more]
KAA0065516.11.71e-0753.23uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025811.1IVF0025811.1mRNA