IVF0025789 (gene) Melon (IVF77) v1

Overview
NameIVF0025789
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReticulon-like protein
Locationchr02: 12182474 .. 12182865 (+)
RNA-Seq ExpressionIVF0025789
SyntenyIVF0025789
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCGAAACTGGCAATGGCAGGATCAACCGCCATGATTCTGACACCTCCTCATCCTCCAGATCTATTGCCAACCGTCCGATTATTTTTCTTCCCTATCCGAGGAGGAAAAGGTAATTTCGGAATCTCTCCCTCGCTATAAAAAGGGCAAGAAGATGCAGAGAATCAAAAGGGACGAAGAGCGAACCTCCGACGGTAATTGGTGCTCTTTGAAGAAACACTAGAAAAGAGAGTTTAGTTGGCTTTGAGATTCGATTTGAGAGAAGGCTCTCTCTTAGGGAATGCAGAGAGATGAGAGGAGATTTGTTTACAAGTTTCTTCTCTAGTGGTCGAGCTGGCAACTCCATTGGCGGCCGGAACTGTCATCGGAAACACGTTGAAGACGGGTGA

mRNA sequence

ATGACGTCGAAACTGGCAATGGCAGGATCAACCGCCATGATTCTGACACCTCCTCATCCTCCAGATCTATTGCCAACCGTCCGATTATTTTTCTTCCCTATCCGAGGAGGAAAAGAGAGTTTAGTTGGCTTTGAGATTCGATTTGAGAGAAGGCTCTCTCTTAGGGAATGCAGAGAGATGAGAGGAGATTTGTTTACAAGTTTCTTCTCTAGTGGTCGAGCTGGCAACTCCATTGGCGGCCGGAACTGTCATCGGAAACACGTTGAAGACGGGTGA

Coding sequence (CDS)

ATGACGTCGAAACTGGCAATGGCAGGATCAACCGCCATGATTCTGACACCTCCTCATCCTCCAGATCTATTGCCAACCGTCCGATTATTTTTCTTCCCTATCCGAGGAGGAAAAGAGAGTTTAGTTGGCTTTGAGATTCGATTTGAGAGAAGGCTCTCTCTTAGGGAATGCAGAGAGATGAGAGGAGATTTGTTTACAAGTTTCTTCTCTAGTGGTCGAGCTGGCAACTCCATTGGCGGCCGGAACTGTCATCGGAAACACGTTGAAGACGGGTGA

Protein sequence

MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFPIRGGKESLVGFEIRFERRLSLRECREMRGDLFTSFFSSGRAGNSIGGRNCHRKHVEDG
Homology
BLAST of IVF0025789 vs. ExPASy TrEMBL
Match: A0A0A0LWM6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269890 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 1  MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFPIR---GGKESLVGFEIRFERRLSLREC 60
          MTSKL MAGSTAMILTP HP DLL TVRLF   +R     ++  +   +RFERRLSLREC
Sbjct: 1  MTSKLGMAGSTAMILTPSHPRDLLLTVRLFLQYLRRKINPRKEKLQLAVRFERRLSLREC 60

Query: 61 REMRGDLFTSFFSSGRAGNSIGGRNCHRKHVEDG 92
          REMRGD FTSF SSGRAGNSIGGRNCHRKHVEDG
Sbjct: 61 REMRGDWFTSFISSGRAGNSIGGRNCHRKHVEDG 94

BLAST of IVF0025789 vs. ExPASy TrEMBL
Match: A0A5A7SWZ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001200 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.1e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1  MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFP 34
          MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFP
Sbjct: 1  MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFP 33

BLAST of IVF0025789 vs. ExPASy TrEMBL
Match: A0A7J7DT18 (Reticulon-like protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G01491 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 31/55 (56.36%), Postives = 31/55 (56.36%), Query Frame = 0

Query: 37  GKESLVGFEIRFERRLSLRECREMRGDLFTSFFSSGRAGNSIGGRNCHRKHVEDG 92
           GK  LV  E RF       EC EMRG   T    SGRA  S GGR CHRKHVEDG
Sbjct: 752 GKRPLVK-ESRFSSESFFGECGEMRGPSLTKSELSGRAKRSAGGRTCHRKHVEDG 805

BLAST of IVF0025789 vs. NCBI nr
Match: KGN65247.1 (hypothetical protein Csa_019669 [Cucumis sativus])

HSP 1 Score: 134 bits (336), Expect = 1.42e-38
Identity = 70/94 (74.47%), Postives = 75/94 (79.79%), Query Frame = 0

Query: 1  MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFPIR---GGKESLVGFEIRFERRLSLREC 60
          MTSKL MAGSTAMILTP HP DLL TVRLF   +R     ++  +   +RFERRLSLREC
Sbjct: 1  MTSKLGMAGSTAMILTPSHPRDLLLTVRLFLQYLRRKINPRKEKLQLAVRFERRLSLREC 60

Query: 61 REMRGDLFTSFFSSGRAGNSIGGRNCHRKHVEDG 91
          REMRGD FTSF SSGRAGNSIGGRNCHRKHVEDG
Sbjct: 61 REMRGDWFTSFISSGRAGNSIGGRNCHRKHVEDG 94

BLAST of IVF0025789 vs. NCBI nr
Match: KAA0035063.1 (hypothetical protein E6C27_scaffold57G001200 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 7.67e-14
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 1  MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFP-IRGGKE 39
          MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFP  + GK+
Sbjct: 1  MTSKLAMAGSTAMILTPPHPPDLLPTVRLFFFPRYKKGKK 40

BLAST of IVF0025789 vs. NCBI nr
Match: KAF7838156.1 (CBL-interacting serine/threonine-protein kinase 6 [Senna tora])

HSP 1 Score: 53.1 bits (126), Expect = 8.57e-07
Identity = 38/84 (45.24%), Postives = 42/84 (50.00%), Query Frame = 0

Query: 8  AGSTAMILTPPHPPDLLPTVRLFFFPIRGGKESLVGFEIRFERRLSLRECREMRGDLFTS 67
          A +T+MI T   PP LL T       + G + S       F R    RECREMRG   T 
Sbjct: 3  ATTTSMIQTR-VPPSLLLTYTAVGSLLPGSRISRAEC---FLRSGVARECREMRGPALTR 62

Query: 68 FFSSGRAGNSIGGRNCHRKHVEDG 91
              G     IGGRNCHRKHVEDG
Sbjct: 63 TEIGGPTKRKIGGRNCHRKHVEDG 82

BLAST of IVF0025789 vs. NCBI nr
Match: KAF5749522.1 (hypothetical protein HS088_TW04G01491 [Tripterygium wilfordii])

HSP 1 Score: 53.9 bits (128), Expect = 7.29e-06
Identity = 31/55 (56.36%), Postives = 31/55 (56.36%), Query Frame = 0

Query: 37  GKESLVGFEIRFERRLSLRECREMRGDLFTSFFSSGRAGNSIGGRNCHRKHVEDG 91
           GK  LV  E RF       EC EMRG   T    SGRA  S GGR CHRKHVEDG
Sbjct: 752 GKRPLVK-ESRFSSESFFGECGEMRGPSLTKSELSGRAKRSAGGRTCHRKHVEDG 805

BLAST of IVF0025789 vs. NCBI nr
Match: CAB4110217.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 50.8 bits (120), Expect = 8.44e-05
Identity = 26/38 (68.42%), Postives = 27/38 (71.05%), Query Frame = 0

Query: 54 LRECREMRGDLFTSFFSSGRAGNSIGGRNCHRKHVEDG 91
          LRECREMRGD   S  + GR   S GGR CHRKHVEDG
Sbjct: 41 LRECREMRGDSRLS--NRGRVKKSTGGRTCHRKHVEDG 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWM64.0e-2874.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269890 PE=4 SV=1[more]
A0A5A7SWZ17.1e-09100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A7J7DT181.8e-0456.36Reticulon-like protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G01491 P... [more]
Match NameE-valueIdentityDescription
KGN65247.11.42e-3874.47hypothetical protein Csa_019669 [Cucumis sativus][more]
KAA0035063.17.67e-1487.50hypothetical protein E6C27_scaffold57G001200 [Cucumis melo var. makuwa][more]
KAF7838156.18.57e-0745.24CBL-interacting serine/threonine-protein kinase 6 [Senna tora][more]
KAF5749522.17.29e-0656.36hypothetical protein HS088_TW04G01491 [Tripterygium wilfordii][more]
CAB4110217.18.44e-0568.42unnamed protein product [Lactuca saligna][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025789.1IVF0025789.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0004672 protein kinase activity