IVF0025724 (gene) Melon (IVF77) v1

Overview


Name	IVF0025724
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr06: 5696219 .. 5697357 (-)
RNA-Seq Expression	IVF0025724
Synteny	IVF0025724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTCAGCTCGAGGACTTTCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGAATCAGTTTTCTCATCCTGGGACAAAAGCGGTCCCCCGACGGTCTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGCCTCATGCTCCGACAACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCGGAGGTAGGCCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTACCAAAAGATGGCCGAAGCTTCCACGAGTGGCGAACGCTTGTCTGGTGTCAGAAACCACTGGAAATGGACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAACGGGAATGCCCCGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGATTTCTTTCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCGGAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCGAAGCTTCCAACGAGTGGCGAACGCACGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGCGAGCGGAATGCCCCAACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCGGGAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCGAAGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAAAAACCACTGGAAATGCACTTGCAGCGAAGAAACGGGCTGA

mRNA sequence

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTCAGCTCGAGGACTTTCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGAATCAGTTTTCTCATCCTGGGACAAAAGCGGTCCCCCGACGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGATTTCTTTCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCGGAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCGGGAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCGAAGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAAAAACCACTGGAAATGCACTTGCAGCGAAGAAACGGGCTGA

Coding sequence (CDS)

ATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTCAGCTCGAGGACTTTCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGCCCCGGAATCAGTTTTCTCATCCTGGGACAAAAGCGGTCCCCCGACGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGATTTCTTTCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCGGAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTTCGGGAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCGAAGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAAAAACCACTGGAAATGCACTTGCAGCGAAGAAACGGGCTGA

Protein sequence

MANASNEWRTLVRCQKPLEMHLQRRKRAQLEDFRCSSQENASENAPESVFSSWDKSGPPTFSRPGVKSGPPTISFLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSEFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVKNHWKCTCSEETG

Homology

[Close]

BLAST of IVF0025724 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.2e-65
Identity = 153/290 (52.76%), Postives = 161/290 (55.52%), Query Frame = 0


Query: 1   MANASNEWRTLVRCQKPLEMHLQRRKRAQLEDFRCSSQENASENAPESVFSSWDKSGPP- 60
           MANASNEWR LVRCQKPLEMHLQRRKR +LEDFRCSSQEN SENAP+S FSSW K   P 
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 225 GFFPLLRIGHKSGSELVGGRTVVRSKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSS 284

Query: 121 -----------------TFSRPGVKSGPPTISFLCSVLVISLSIFGSRAPRTSTHTPGML 180
                             FSRPG KS PPT+S LCSVLV SLSIFG+  PRTSTHTPGML
Sbjct: 285 RTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGML 344

Query: 181 PDTFSEFSRP-------GVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFS 206
           PDTFSE   P       G    P     L  +   S+ + GS  PRTSTHT GMLPDTFS
Sbjct: 345 PDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGS-TPRTSTHTSGMLPDTFS 404

[Close]

BLAST of IVF0025724 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-46
Identity = 116/233 (49.79%), Postives = 124/233 (53.22%), Query Frame = 0


Query: 61   FSRPGVKSGPPTISFLCSVLVISLSIFGSRAPRTSTHTPGMLPDTF-------------- 120
            F RPG K GPPTIS LCSVLVISL IF +R  RTSTHTPGM+ DTF              
Sbjct: 1289 FFRPGEKCGPPTISSLCSVLVISLPIFRARTLRTSTHTPGMVSDTFFGGIGWEASWLEGE 1348

Query: 121  -------------------------SEFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPR 180
                                     ++FSRPG KSGPPTVSSLCSVLVISLSIFG+R  R
Sbjct: 1349 LCEVNGLSSKISSARPMKTRARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLR 1408

Query: 181  TSTHTPGMLPDTFSGG-------------------------------------------- 206
            TSTHT GMLPDTFSG                                             
Sbjct: 1409 TSTHTSGMLPDTFSGETTGNALQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRSPD 1468

[Close]

BLAST of IVF0025724 vs. ExPASy TrEMBL
Match: A0A5D3E5W4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002550 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 9.0e-36
Identity = 98/203 (48.28%), Postives = 108/203 (53.20%), Query Frame = 0


Query: 1   MANASNEWRTLVRCQKPLEMHLQRRKRAQLEDFRCSSQENASENAPESVFSSWDKSGPPT 60
           M +ASNEWRTLVRCQKPLEMHLQ+RKRA+LEDF   SQEN SENA   VFSSW K G P 
Sbjct: 1   MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61  FSRPGVKSGPPTISFLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSEFSRPGVKSGPPT 120
              P                   L   G ++     HT                      
Sbjct: 61  GFFP-------------------LFRIGHKSFDLEDHT---------------------- 120

Query: 121 VSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKRSKRWP 180
                               +TST TP MLPDTFS GIG++ASSLEGE  CDPK+SK WP
Sbjct: 121 -------------------LKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWP 143

Query: 181 KLPTSGERSSGVKNHWKCTCSEE 204
            LPT  +RSSGVKNHWKCTC EE
Sbjct: 181 MLPTYRKRSSGVKNHWKCTCREE 143

[Close]

BLAST of IVF0025724 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.0e-34
Identity = 87/164 (53.05%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 32  DFRCSSQENASENAPESVFSSWDKSGPPTFSRPGVKSGPPTISFLCSVLVISLSIFGSRA 91
           DFRCSSQEN S+NA +SVFSSW                                      
Sbjct: 107 DFRCSSQENTSKNATDSVFSSW-------------------------------------- 166

Query: 92  PRTSTHTPGMLPDTFSEFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLP 151
                                 VKSGPPTVSS+CSVLVI LSIFG+  PRTSTHTPGMLP
Sbjct: 167 ----------------------VKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLP 210

Query: 152 DTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVKNH 196
           D FSGGI REA SLEGELWCDPKRS+RWP LPTSG+RSS V+NH
Sbjct: 227 DMFSGGIDREARSLEGELWCDPKRSERWPMLPTSGKRSSDVRNH 210

[Close]

BLAST of IVF0025724 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 9.6e-30
Identity = 84/147 (57.14%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 89  SRAPRTSTHTPGMLPDTFS------------EFSR--------PGV-------------K 148
           +R PRTSTHTPGMLP+TFS            E S+         GV             K
Sbjct: 368 ARTPRTSTHTPGMLPNTFSQGIGREASLLEGELSKRNRLSSRNSGVRPKKMDSVFSSWSK 427

Query: 149 SGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKR 203
           +   TVSSL  +LVISL IFG+  PRTSTHT  MLPD FS GIGREASSLEGEL CDPK 
Sbjct: 428 TWSQTVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKW 487

[Close]

BLAST of IVF0025724 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 3.13e-79
Identity = 153/290 (52.76%), Postives = 161/290 (55.52%), Query Frame = 0


Query: 1   MANASNEWRTLVRCQKPLEMHLQRRKRAQLEDFRCSSQENASENAPESVFSSWDKSGPPT 60
           MANASNEWR LVRCQKPLEMHLQRRKR +LEDFRCSSQEN SENAP+S FSSW K   P 
Sbjct: 165 MANASNEWRMLVRCQKPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPD 224

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 225 GFFPLLRIGHKSGSELVGGRTVVRSKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSS 284

Query: 121 ------------------FSRPGVKSGPPTISFLCSVLVISLSIFGSRAPRTSTHTPGML 180
                             FSRPG KS PPT+S LCSVLV SLSIFG+  PRTSTHTPGML
Sbjct: 285 RTSGARPKKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGML 344

Query: 181 PDTFSEFSRP-------GVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFS 205
           PDTFSE   P       G    P     L  +   S+ + GS  PRTSTHT GMLPDTFS
Sbjct: 345 PDTFSERECPRLSFLVLGKLWSPDGFFPLLRIGHKSVDLRGST-PRTSTHTSGMLPDTFS 404

[Close]

BLAST of IVF0025724 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (502), Expect = 2.18e-54
Identity = 116/233 (49.79%), Postives = 124/233 (53.22%), Query Frame = 0


Query: 61   FSRPGVKSGPPTISFLCSVLVISLSIFGSRAPRTSTHTPGMLPDTF-------------- 120
            F RPG K GPPTIS LCSVLVISL IF +R  RTSTHTPGM+ DTF              
Sbjct: 1289 FFRPGEKCGPPTISSLCSVLVISLPIFRARTLRTSTHTPGMVSDTFFGGIGWEASWLEGE 1348

Query: 121  -------------------------SEFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPR 180
                                     ++FSRPG KSGPPTVSSLCSVLVISLSIFG+R  R
Sbjct: 1349 LCEVNGLSSKISSARPMKTRARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFGARTLR 1408

Query: 181  TSTHTPGMLPDTFSGG-------------------------------------------- 205
            TSTHT GMLPDTFSG                                             
Sbjct: 1409 TSTHTSGMLPDTFSGETTGNALQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRSPD 1468

[Close]

BLAST of IVF0025724 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (403), Expect = 2.32e-45
Identity = 87/164 (53.05%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 32  DFRCSSQENASENAPESVFSSWDKSGPPTFSRPGVKSGPPTISFLCSVLVISLSIFGSRA 91
           DFRCSSQEN S+NA +SVFSSW                                      
Sbjct: 107 DFRCSSQENTSKNATDSVFSSW-------------------------------------- 166

Query: 92  PRTSTHTPGMLPDTFSEFSRPGVKSGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLP 151
                                 VKSGPPTVSS+CSVLVI LSIFG+  PRTSTHTPGMLP
Sbjct: 167 ----------------------VKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLP 210

Query: 152 DTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVKNH 195
           D FSGGI REA SLEGELWCDPKRS+RWP LPTSG+RSS V+NH
Sbjct: 227 DMFSGGIDREARSLEGELWCDPKRSERWPMLPTSGKRSSDVRNH 210

[Close]

BLAST of IVF0025724 vs. NCBI nr
Match: KAA0035524.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (406), Expect = 4.24e-44
Identity = 98/203 (48.28%), Postives = 108/203 (53.20%), Query Frame = 0


Query: 1   MANASNEWRTLVRCQKPLEMHLQRRKRAQLEDFRCSSQENASENAPESVFSSWDKSGPPT 60
           M +ASNEWRTLVRCQKPLEMHLQ+RKRA+LEDF   SQEN SENA   VFSSW K G P 
Sbjct: 1   MVDASNEWRTLVRCQKPLEMHLQKRKRAELEDFWSLSQENTSENALNPVFSSWGKKGSPN 60

Query: 61  FSRPGVKSGPPTISFLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSEFSRPGVKSGPPT 120
              P                   L   G ++     HT                      
Sbjct: 61  GFFP-------------------LFRIGHKSFDLEDHT---------------------- 120

Query: 121 VSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKRSKRWP 180
                               +TST TP MLPDTFS GIG++ASSLEGE  CDPK+SK WP
Sbjct: 121 -------------------LKTSTITPCMLPDTFSQGIGQKASSLEGEPRCDPKQSKSWP 143

Query: 181 KLPTSGERSSGVKNHWKCTCSEE 203
            LPT  +RSSGVKNHWKCTC EE
Sbjct: 181 MLPTYRKRSSGVKNHWKCTCREE 143

[Close]

BLAST of IVF0025724 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (359), Expect = 2.70e-35
Identity = 84/147 (57.14%), Postives = 92/147 (62.59%), Query Frame = 0


Query: 89  SRAPRTSTHTPGMLPDTFS------------EFSR--------PGV-------------K 148
           +R PRTSTHTPGMLP+TFS            E S+         GV             K
Sbjct: 368 ARTPRTSTHTPGMLPNTFSQGIGREASLLEGELSKRNRLSSRNSGVRPKKMDSVFSSWSK 427

Query: 149 SGPPTVSSLCSVLVISLSIFGSRAPRTSTHTPGMLPDTFSGGIGREASSLEGELWCDPKR 202
           +   TVSSL  +LVISL IFG+  PRTSTHT  MLPD FS GIGREASSLEGEL CDPK 
Sbjct: 428 TWSQTVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKW 487

The following BLAST results are available for this feature:

BLAST of IVF0025724 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFP2	3.2e-65	52.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V5J2	3.3e-46	49.79	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3E5W4	9.0e-36	48.28	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CZ27	1.0e-34	53.05	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3DIF8	9.6e-30	57.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]

BLAST of IVF0025724 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22521.1	3.13e-79	52.76	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0062888.1	2.18e-54	49.79	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK15439.1	2.32e-45	53.05	uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]	[more]
KAA0035524.1	4.24e-44	48.28	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31010.1 NBS-LRR t...	[more]
TYK23424.1	2.70e-35	57.14	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025724 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025724.2	IVF0025724.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity