Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAACAAATGCATGTGAATTTATTGTGCATTAATAGAAAAGGCAAAATCCCAACTTCCTACTTCCCCAATATCATTAATGCCCTAAACCCTAAATTTCTCAAATTGCTCTCACTCTTCCTTTTTAAAATGCTCTGTCAATTCTATGTTTTCTTCTAAAATCCGCCATGGCGGACCTCGAAACCGCATCGGCTGGGAAATTCCGGTACCGGAGACTGAGGTACAGCGAGGAATTTGAGGAGGCGTTTGGTAGATCTAGAGGAGGGGGAGGAGGGATTAGGAAGAGATGGAGGACGCGGCGGTGGTGGTTCAGAATGAGAATGAGAAAGGGTTCTTCTTCTTTGTCGATTGGGAGGAGGTTGAAGAAACTGAGAATCCCAAGCTTGAGGAAGCTGATGAGGAGGAAATGGCGACTGGTGAATGCATTGAGAGGATCGATTGCCAAGGTATTGAAGAGATTTAGAGATGGAGAAGCGTATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTTCTTCAGGTTAATCCAAGCTCTATGAAATGCATGAAGAATCATCATCAACAACATGGATTTGATGTTCGGAATTTCACCCAAACTTATTCACTTCCAAACTTTATCTAATTAGTAATCAGTATAGTTTGGTTTTCTTTTTAATTTCTTCTTATAATTGTTGTGTTTTATGTGATTTCTCATTGCTTTTTAAATTTGAATGTTAATTAATAATCAACAACTGATGAACTGACTTAAAAAGAAGTTATAAATTTCTTCTCATTCTTTTTA
mRNA sequence
CACAACAAATGCATGTGAATTTATTGTGCATTAATAGAAAAGGCAAAATCCCAACTTCCTACTTCCCCAATATCATTAATGCCCTAAACCCTAAATTTCTCAAATTGCTCTCACTCTTCCTTTTTAAAATGCTCTGTCAATTCTATGTTTTCTTCTAAAATCCGCCATGGCGGACCTCGAAACCGCATCGGCTGGGAAATTCCGGTACCGGAGACTGAGGTACAGCGAGGAATTTGAGGAGGCGTTTGGTAGATCTAGAGGAGGGGGAGGAGGGATTAGGAAGAGATGGAGGACGCGGCGGTGGTGGTTCAGAATGAGAATGAGAAAGGGTTCTTCTTCTTTGTCGATTGGGAGGAGGTTGAAGAAACTGAGAATCCCAAGCTTGAGGAAGCTGATGAGGAGGAAATGGCGACTGGTGAATGCATTGAGAGGATCGATTGCCAAGGTATTGAAGAGATTTAGAGATGGAGAAGCGTATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTTCTTCAGGTTAATCCAAGCTCTATGAAATGCATGAAGAATCATCATCAACAACATGGATTTGATGTTCGGAATTTCACCCAAACTTATTCACTTCCAAACTTTATCTAATTAGTAATCAGTATAGTTTGGTTTTCTTTTTAATTTCTTCTTATAATTGTTGTGTTTTATGTGATTTCTCATTGCTTTTTAAATTTGAATGTTAATTAATAATCAACAACTGATGAACTGACTTAAAAAGAAGTTATAAATTTCTTCTCATTCTTTTTA
Coding sequence (CDS)
ATGGCGGACCTCGAAACCGCATCGGCTGGGAAATTCCGGTACCGGAGACTGAGGTACAGCGAGGAATTTGAGGAGGCGTTTGGTAGATCTAGAGGAGGGGGAGGAGGGATTAGGAAGAGATGGAGGACGCGGCGGTGGTGGTTCAGAATGAGAATGAGAAAGGGTTCTTCTTCTTTGTCGATTGGGAGGAGGTTGAAGAAACTGAGAATCCCAAGCTTGAGGAAGCTGATGAGGAGGAAATGGCGACTGGTGAATGCATTGAGAGGATCGATTGCCAAGGTATTGAAGAGATTTAGAGATGGAGAAGCGTATTTGGGAGATCTTTTTGCTGGAAATTACTTGTTTCTTCAGGTTAATCCAAGCTCTATGAAATGCATGAAGAATCATCATCAACAACATGGATTTGATGTTCGGAATTTCACCCAAACTTATTCACTTCCAAACTTTATCTAA
Protein sequence
MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLSIGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNPSSMKCMKNHHQQHGFDVRNFTQTYSLPNFI
Homology
BLAST of IVF0025695 vs. ExPASy TrEMBL
Match:
A0A1S4E272 (uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=4 SV=1)
HSP 1 Score: 300.8 bits (769), Expect = 3.1e-78
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
Query: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS 60
MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS
Sbjct: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS 60
Query: 61 IGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120
IGRRLKKLRIPSLRKLMRRKWRLVNA+RGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP
Sbjct: 61 IGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120
Query: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLPNFI 151
SSMKCMKNHHQQHGFDVRNFTQTYSLPNFI
Sbjct: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLPNFI 150
BLAST of IVF0025695 vs. ExPASy TrEMBL
Match:
A0A0A0KSD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1)
HSP 1 Score: 277.7 bits (709), Expect = 2.8e-71
Identity = 142/154 (92.21%), Postives = 147/154 (95.45%), Query Frame = 0
Query: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSR-GGGGGIRKRWRTRRWWFRMRMRKGSSSL 60
MADLETASAGKFRYRRLRYSEEFEEAFGRSR GGG GIRKRWR RRWWFRMRMRKGSSSL
Sbjct: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRRRRWWFRMRMRKGSSSL 60
Query: 61 SIGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120
SIGRRLKKLRIPSLRKL+RRKWRLVNA+RGSIAKV+KRFRDGEAYLGDLFAGNYLFLQVN
Sbjct: 61 SIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQVN 120
Query: 121 PSSMKCMKNHH---QQHGFDVRNFTQTYSLPNFI 151
PSSMKC+KNHH QQHGFDVRNF QTYSLP+FI
Sbjct: 121 PSSMKCLKNHHHHQQQHGFDVRNFPQTYSLPSFI 154
BLAST of IVF0025695 vs. ExPASy TrEMBL
Match:
A0A6J1E2Z5 (uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC111430312 PE=4 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.4e-41
Identity = 104/149 (69.80%), Postives = 118/149 (79.19%), Query Frame = 0
Query: 1 MADLE-TASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRW--RTRRWWFRMRMRKGSS 60
M DL+ TA GKFRYRRLRYSEEFEEAFGRSR G R+R+ R++R WFR+R
Sbjct: 17 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKR-WFRIR------ 76
Query: 61 SLSIGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQ 120
SIGRRLKKLR+PSLRKL+RRK RLV A+RGSIAKV+KRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 77 RASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQ 136
Query: 121 VNPSSMKCMKNHHQQHGFDVRNFTQTYSL 147
VNPSS+KC KNHH ++NF TYSL
Sbjct: 137 VNPSSIKCHKNHHSA----LQNFAPTYSL 154
BLAST of IVF0025695 vs. ExPASy TrEMBL
Match:
A0A6J1JM01 (uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096 PE=4 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 2.9e-39
Identity = 98/147 (66.67%), Postives = 112/147 (76.19%), Query Frame = 0
Query: 1 MADLE-TASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSL 60
M DL+ TA GKFRYRRLRYSEEFEEAFGRSR G R+ + WF++R
Sbjct: 1 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIR------RA 60
Query: 61 SIGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120
SIGRRLKKLR+PSLRKL+RRK RLV A++GSI+KV+KRFR+GEAYLGDLFAGNYLFLQVN
Sbjct: 61 SIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVN 120
Query: 121 PSSMKCMKNHHQQHGFDVRNFTQTYSL 147
PSS+KC KNHH + NF TYSL
Sbjct: 121 PSSIKCHKNHHSA----LPNFAPTYSL 137
BLAST of IVF0025695 vs. ExPASy TrEMBL
Match:
A0A6J1FMJ7 (uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC111445317 PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.6e-37
Identity = 98/147 (66.67%), Postives = 110/147 (74.83%), Query Frame = 0
Query: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS 60
MADLE ASA KFRYRRLR+S+E E AF RSR G + R FRMR S
Sbjct: 53 MADLEIASAAKFRYRRLRHSDELESAFARSRLGE-------QRRFGGFRMR------RAS 112
Query: 61 IGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120
IGRRLKKLRIPSLRKL RK RLVNA+ GSI+KVLKRFRDGEAYLGDLFAGNYLFLQ+NP
Sbjct: 113 IGRRLKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINP 172
Query: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLP 148
SS+KC+ NHHQ + ++NF T+SLP
Sbjct: 173 SSIKCLANHHQ---YPLQNFPPTFSLP 182
BLAST of IVF0025695 vs. NCBI nr
Match:
XP_016902323.1 (PREDICTED: uncharacterized protein LOC107991631 [Cucumis melo])
HSP 1 Score: 300 bits (767), Expect = 1.83e-102
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
Query: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS 60
MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS
Sbjct: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS 60
Query: 61 IGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120
IGRRLKKLRIPSLRKLMRRKWRLVNA+RGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP
Sbjct: 61 IGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120
Query: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLPNFI 150
SSMKCMKNHHQQHGFDVRNFTQTYSLPNFI
Sbjct: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLPNFI 150
BLAST of IVF0025695 vs. NCBI nr
Match:
XP_011655383.1 (uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical protein Csa_009087 [Cucumis sativus])
HSP 1 Score: 276 bits (707), Expect = 2.97e-93
Identity = 142/154 (92.21%), Postives = 147/154 (95.45%), Query Frame = 0
Query: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGG-GIRKRWRTRRWWFRMRMRKGSSSL 60
MADLETASAGKFRYRRLRYSEEFEEAFGRSR GGG GIRKRWR RRWWFRMRMRKGSSSL
Sbjct: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRRRRWWFRMRMRKGSSSL 60
Query: 61 SIGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120
SIGRRLKKLRIPSLRKL+RRKWRLVNA+RGSIAKV+KRFRDGEAYLGDLFAGNYLFLQVN
Sbjct: 61 SIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQVN 120
Query: 121 PSSMKCMKNHH---QQHGFDVRNFTQTYSLPNFI 150
PSSMKC+KNHH QQHGFDVRNF QTYSLP+FI
Sbjct: 121 PSSMKCLKNHHHHQQQHGFDVRNFPQTYSLPSFI 154
BLAST of IVF0025695 vs. NCBI nr
Match:
XP_038889218.1 (uncharacterized protein LOC120079105 [Benincasa hispida])
HSP 1 Score: 198 bits (504), Expect = 1.50e-62
Identity = 110/149 (73.83%), Postives = 126/149 (84.56%), Query Frame = 0
Query: 1 MADLETASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSLS 60
MADLETA A KFRYRRL YSEEFEEAFGR RGG ++ R++RW+ R+RK SS
Sbjct: 1 MADLETAPAAKFRYRRLSYSEEFEEAFGRYRGGERILK---RSKRWF---RIRKASS--- 60
Query: 61 IGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVNP 120
IGRRLKKLRIPSLRKL+RRK +LVNA+RGSI+K+LKRFRDGEAYLGDLFAGNYLFLQVNP
Sbjct: 61 IGRRLKKLRIPSLRKLLRRKSQLVNAMRGSISKILKRFRDGEAYLGDLFAGNYLFLQVNP 120
Query: 121 SSMKCMKNHHQQHGFDVRNFTQTYSLPNF 149
SSMKC+KNHH+ F ++NF QTYSLP+F
Sbjct: 121 SSMKCLKNHHR---FPLQNFPQTYSLPSF 137
BLAST of IVF0025695 vs. NCBI nr
Match:
XP_023551709.1 (uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 179 bits (454), Expect = 6.32e-55
Identity = 102/147 (69.39%), Postives = 115/147 (78.23%), Query Frame = 0
Query: 1 MADLETASA-GKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSL 60
M DL+T +A GKFRYRRLRYSEEFEEAFGRSRGG R+ + WFR+R
Sbjct: 1 MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRR------A 60
Query: 61 SIGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120
SIGRRLKKLR+PSLRKL+RRK RLV A+RGSIAKV+KRFR+GEAYLGDLFAGNYLFLQVN
Sbjct: 61 SIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVN 120
Query: 121 PSSMKCMKNHHQQHGFDVRNFTQTYSL 146
PSS+KC KNHH ++NF TYSL
Sbjct: 121 PSSIKCHKNHHSA----LQNFAPTYSL 137
BLAST of IVF0025695 vs. NCBI nr
Match:
XP_022922294.1 (uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothetical protein SDJN02_07132, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 178 bits (451), Expect = 3.11e-54
Identity = 104/149 (69.80%), Postives = 118/149 (79.19%), Query Frame = 0
Query: 1 MADLET-ASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRW--RTRRWWFRMRMRKGSS 60
M DL+T A GKFRYRRLRYSEEFEEAFGRSR G R+R+ R++RW FR+R
Sbjct: 17 MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRW-FRIRR----- 76
Query: 61 SLSIGRRLKKLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQ 120
SIGRRLKKLR+PSLRKL+RRK RLV A+RGSIAKV+KRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 77 -ASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQ 136
Query: 121 VNPSSMKCMKNHHQQHGFDVRNFTQTYSL 146
VNPSS+KC KNHH ++NF TYSL
Sbjct: 137 VNPSSIKCHKNHHSA----LQNFAPTYSL 154
BLAST of IVF0025695 vs. TAIR 10
Match:
AT5G14410.1 (unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 61.6 bits (148), Expect = 6.1e-10
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 0
Query: 58 SLSIGRRLK-KLRIPSLRKLMRRKWRLVNALRGSIAKVLKRFRDGEAYLGDLFAGNYLFL 117
SL RR++ +++I LR +R+K N ++ I K+LKR ++ +++ GDLFAGNYLF+
Sbjct: 42 SLGGRRRIRVRVKIRRLRGFVRKK---ANRVKTGILKILKRLKESQSHFGDLFAGNYLFM 101
Query: 118 QVNPSSMKCM----KNHHQQHGFDVRNFTQTYSLPNFI 151
QVNPSS+ K+ Q+G NF SLP +
Sbjct: 102 QVNPSSLNAKYVFDKSFQGQNG----NFPSRLSLPRVL 132
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S4E272 | 3.1e-78 | 99.33 | uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=... | [more] |
A0A0A0KSD1 | 2.8e-71 | 92.21 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1 | [more] |
A0A6J1E2Z5 | 1.4e-41 | 69.80 | uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC1114303... | [more] |
A0A6J1JM01 | 2.9e-39 | 66.67 | uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096... | [more] |
A0A6J1FMJ7 | 1.6e-37 | 66.67 | uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC1114453... | [more] |
Match Name | E-value | Identity | Description | |
XP_016902323.1 | 1.83e-102 | 99.33 | PREDICTED: uncharacterized protein LOC107991631 [Cucumis melo] | [more] |
XP_011655383.1 | 2.97e-93 | 92.21 | uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical ... | [more] |
XP_038889218.1 | 1.50e-62 | 73.83 | uncharacterized protein LOC120079105 [Benincasa hispida] | [more] |
XP_023551709.1 | 6.32e-55 | 69.39 | uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo] | [more] |
XP_022922294.1 | 3.11e-54 | 69.80 | uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothet... | [more] |
Match Name | E-value | Identity | Description | |
AT5G14410.1 | 6.1e-10 | 39.80 | unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bact... | [more] |