Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCGTTCCTCTAGATTCTACTATAGAAGAACAACCGAAGGTGTTCCATTTCAATGGGAGATGCAACCGGGAACTCCCAAGAGTAATCCGCCGCTCACGGAGGTGATTCCGCCGCCGATCAGCCCTCCGCCGGCGGTGCTCAGCCTTGGTTTCTCGAAGCCGGTGAGGGTTGTTCAGAATAAACAATCGTTGTTTGTGTTATTTGGGCCGTGGAGGAAGCAGCCCAAGCCCAAGCCCAAGCCCAAGAAGAATCCTTGTCCGTTGGATCTTAATAAGAACAACGAGCGGCTGAGATTTGACTCGTGTGGGTCCCAGTGTGAGTTAATGGCAGAATCTTCGTGTAAAGATAGATCTTCACCGGTGGGGGAATCTTCCGGTCAGTGGCGGCTGGGATGCGGCCCGTGGAGGATCAACCCAATTAAAATAGGTATGGGAAGGCGAGTTTAG
mRNA sequence
ATGAGTCGTTCCTCTAGATTCTACTATAGAAGAACAACCGAAGGTGTTCCATTTCAATGGGAGATGCAACCGGGAACTCCCAAGAGTAATCCGCCGCTCACGGAGGTGATTCCGCCGCCGATCAGCCCTCCGCCGGCGGTGCTCAGCCTTGGTTTCTCGAAGCCGGTGAGGGTTGTTCAGAATAAACAATCGTTGTTTGTGTTATTTGGGCCGTGGAGGAAGCAGCCCAAGCCCAAGCCCAAGCCCAAGAAGAATCCTTGTCCGTTGGATCTTAATAAGAACAACGAGCGGCTGAGATTTGACTCGTGTGGGTCCCAGTGTGAGTTAATGGCAGAATCTTCGTGTAAAGATAGATCTTCACCGGTGGGGGAATCTTCCGGTCAGTGGCGGCTGGGATGCGGCCCGTGGAGGATCAACCCAATTAAAATAGGTATGGGAAGGCGAGTTTAG
Coding sequence (CDS)
ATGAGTCGTTCCTCTAGATTCTACTATAGAAGAACAACCGAAGGTGTTCCATTTCAATGGGAGATGCAACCGGGAACTCCCAAGAGTAATCCGCCGCTCACGGAGGTGATTCCGCCGCCGATCAGCCCTCCGCCGGCGGTGCTCAGCCTTGGTTTCTCGAAGCCGGTGAGGGTTGTTCAGAATAAACAATCGTTGTTTGTGTTATTTGGGCCGTGGAGGAAGCAGCCCAAGCCCAAGCCCAAGCCCAAGAAGAATCCTTGTCCGTTGGATCTTAATAAGAACAACGAGCGGCTGAGATTTGACTCGTGTGGGTCCCAGTGTGAGTTAATGGCAGAATCTTCGTGTAAAGATAGATCTTCACCGGTGGGGGAATCTTCCGGTCAGTGGCGGCTGGGATGCGGCCCGTGGAGGATCAACCCAATTAAAATAGGTATGGGAAGGCGAGTTTAG
Protein sequence
MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQNKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSSPVGESSGQWRLGCGPWRINPIKIGMGRRV
Homology
BLAST of IVF0025643 vs. ExPASy TrEMBL
Match:
A0A5D3CJV8 (Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00380 PE=4 SV=1)
HSP 1 Score: 313.5 bits (802), Expect = 4.6e-82
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ
Sbjct: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
Query: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS
Sbjct: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
Query: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 150
PVGESSGQWRLGCGPWRINPIKIGMGRRV
Sbjct: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
BLAST of IVF0025643 vs. ExPASy TrEMBL
Match:
A0A0A0LUL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1)
HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 134/149 (89.93%), Postives = 137/149 (91.95%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPK+NPPLTEVI PPISPPPAVLSLG SKPVR VQ
Sbjct: 25 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVRAVQ 84
Query: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
NKQ LFVLFGPWRKQ PKPKPKKNPCPLDLN NERLRFDSCGSQCELMAESSCK +S+
Sbjct: 85 NKQPLFVLFGPWRKQ--PKPKPKKNPCPLDLNNKNERLRFDSCGSQCELMAESSCKGKSA 144
Query: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 150
P G SSG WRLGCGPWRINPIKIGMGRRV
Sbjct: 145 PAGGSSGHWRLGCGPWRINPIKIGMGRRV 171
BLAST of IVF0025643 vs. ExPASy TrEMBL
Match:
A0A6J1KZJ1 (uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680 PE=4 SV=1)
HSP 1 Score: 151.4 bits (381), Expect = 3.0e-33
Identity = 88/154 (57.14%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 4 SSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQNKQ 63
S +YYRRTTEGVPFQWEMQPGTPK +PP TE + I+PPPA LSL KP R KQ
Sbjct: 28 SRLYYYRRTTEGVPFQWEMQPGTPK-DPPYTEAVTLLITPPPAALSLRPPKPAR-THGKQ 87
Query: 64 SLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS--- 123
SLF+LF PWRKQ K KK+ C D + R RF SCGSQCE + +S C+ +SS
Sbjct: 88 SLFLLFRPWRKQ----SKSKKHSCLSD-EFEDGRTRFGSCGSQCEFI-QSPCEPKSSSSS 147
Query: 124 -----PVGESSGQWRLGCGPWRINPIKIGMGRRV 150
P ESS RLGCGPWRINP++I +GRRV
Sbjct: 148 AWSSLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173
BLAST of IVF0025643 vs. ExPASy TrEMBL
Match:
A0A6J1EQV3 (uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC111436686 PE=4 SV=1)
HSP 1 Score: 149.8 bits (377), Expect = 8.9e-33
Identity = 87/154 (56.49%), Postives = 102/154 (66.23%), Query Frame = 0
Query: 4 SSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQNKQ 63
S +YYRRTTEGVPFQWEMQPGTPK +PP TE + I+PPPA LSL KP R KQ
Sbjct: 28 SRLYYYRRTTEGVPFQWEMQPGTPK-DPPYTEAVTLLITPPPAALSLRPPKPAR-THGKQ 87
Query: 64 SLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS--- 123
SLF+LF PWRKQ K +K+ C D + R RF SCGSQCE + +S C+ +SS
Sbjct: 88 SLFLLFRPWRKQ----SKSQKHSCLSD-EFGDGRTRFGSCGSQCEFI-QSPCEPKSSSSS 147
Query: 124 -----PVGESSGQWRLGCGPWRINPIKIGMGRRV 150
P ESS RLGCGPWRINP++I +GRRV
Sbjct: 148 SWSSLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173
BLAST of IVF0025643 vs. ExPASy TrEMBL
Match:
A0A540N405 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008607 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 8.3e-15
Identity = 70/173 (40.46%), Postives = 83/173 (47.98%), Query Frame = 0
Query: 4 SSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPV---RVVQ 63
SSR YY R+TEGVPF WEMQPGTP+ NPP E I PPISPPPAVLSLG KP ++
Sbjct: 40 SSRVYYCRSTEGVPFDWEMQPGTPR-NPPKEEAI-PPISPPPAVLSLGLPKPCIDQQLHT 99
Query: 64 NKQSLFVL--FGPWRKQPKPKPKPKKNPCPLDLNKNNERL-RFDSCGSQCELMAESSCKD 123
NK L W K+ K K + K N L N ++ + D C S E MA SS
Sbjct: 100 NKPPTSPLHRLKFWSKKSKTKKQRKNN---LQHNGGLDKFDKVDFCSSDSEFMASSSSPR 159
Query: 124 RSSPVGESSGQWRLG---------------------CGPWRINPIKIGMGRRV 150
SS SS + G C PW+++ RRV
Sbjct: 160 NSSSSSSSSFSFSKGQCSSLRSTPARDSFTSSGHFSCSPWKLSSFLTSAARRV 207
BLAST of IVF0025643 vs. NCBI nr
Match:
KAA0058273.1 (oxysterol-binding protein-related protein 4B-like [Cucumis melo var. makuwa] >TYK11825.1 oxysterol-binding protein-related protein 4B-like [Cucumis melo var. makuwa])
HSP 1 Score: 311 bits (798), Expect = 3.18e-107
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ
Sbjct: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
Query: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS
Sbjct: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
Query: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
PVGESSGQWRLGCGPWRINPIKIGMGRRV
Sbjct: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
BLAST of IVF0025643 vs. NCBI nr
Match:
XP_004146363.1 (uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical protein Csa_019691 [Cucumis sativus])
HSP 1 Score: 276 bits (707), Expect = 5.10e-93
Identity = 134/149 (89.93%), Postives = 137/149 (91.95%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPK+NPPLTEVI PPISPPPAVLSLG SKPVR VQ
Sbjct: 25 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVRAVQ 84
Query: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
NKQ LFVLFGPWRKQPKPKPK KNPCPLDLN NERLRFDSCGSQCELMAESSCK +S+
Sbjct: 85 NKQPLFVLFGPWRKQPKPKPK--KNPCPLDLNNKNERLRFDSCGSQCELMAESSCKGKSA 144
Query: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
P G SSG WRLGCGPWRINPIKIGMGRRV
Sbjct: 145 PAGGSSGHWRLGCGPWRINPIKIGMGRRV 171
BLAST of IVF0025643 vs. NCBI nr
Match:
XP_038878338.1 (uncharacterized protein LOC120070597 [Benincasa hispida])
HSP 1 Score: 238 bits (608), Expect = 2.60e-78
Identity = 116/149 (77.85%), Postives = 123/149 (82.55%), Query Frame = 0
Query: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQ 60
MSRSSRFYYRRTTEGVPFQWEMQPGTPK+ PPLT+V+PPPISPPPA+LSL SKP R VQ
Sbjct: 1 MSRSSRFYYRRTTEGVPFQWEMQPGTPKNTPPLTDVVPPPISPPPAMLSLSLSKPGRAVQ 60
Query: 61 NKQSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS 120
NKQ LFVLFGPW KQ KPK KNPCPLD N + ERLRFDSCGS CE M ESSCK +S
Sbjct: 61 NKQPLFVLFGPWWKQFKPK----KNPCPLDHNNDKERLRFDSCGSHCEFMEESSCKAKSL 120
Query: 121 PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
ESSG WR+GCGPWRINPIKI GRRV
Sbjct: 121 QAAESSGHWRVGCGPWRINPIKIATGRRV 145
BLAST of IVF0025643 vs. NCBI nr
Match:
XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima])
HSP 1 Score: 150 bits (380), Expect = 3.07e-43
Identity = 90/155 (58.06%), Postives = 105/155 (67.74%), Query Frame = 0
Query: 4 SSR-FYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQNK 63
SSR +YYRRTTEGVPFQWEMQPGTPK +PP TE + I+PPPA LSL KP R K
Sbjct: 27 SSRLYYYRRTTEGVPFQWEMQPGTPK-DPPYTEAVTLLITPPPAALSLRPPKPART-HGK 86
Query: 64 QSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS-- 123
QSLF+LF PWRKQ K K K+ C D ++ R RF SCGSQCE + +S C+ +SS
Sbjct: 87 QSLFLLFRPWRKQSKSK----KHSCLSDEFEDG-RTRFGSCGSQCEFI-QSPCEPKSSSS 146
Query: 124 ------PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
P ESS RLGCGPWRINP++I +GRRV
Sbjct: 147 SAWSSLPAAESSAHRRLGCGPWRINPLRIAIGRRV 173
BLAST of IVF0025643 vs. NCBI nr
Match:
KAG6587751.1 (hypothetical protein SDJN03_16316, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 149 bits (377), Expect = 9.02e-43
Identity = 90/156 (57.69%), Postives = 106/156 (67.95%), Query Frame = 0
Query: 4 SSR-FYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKPVRVVQNK 63
SSR +YYRRTTEGVPFQWEMQPGTPK +PP TE + I+PPPA LSL KP R Q K
Sbjct: 27 SSRLYYYRRTTEGVPFQWEMQPGTPK-DPPYTEAVTLLITPPPAALSLRPPKPART-QGK 86
Query: 64 QSLFVLFGPWRKQPKPKPKPKKNPCPLDLNKNNERLRFDSCGSQCELMAESSCKDRSS-- 123
QSLF+LF PWRKQ K + K+ C D ++ R RF SCGSQCE + +S C+ +SS
Sbjct: 87 QSLFLLFRPWRKQSKSQ----KHSCLSDEFEDG-RTRFGSCGSQCEFI-QSLCEPKSSSS 146
Query: 124 -------PVGESSGQWRLGCGPWRINPIKIGMGRRV 149
P ESS RLGCGPWRINP++I +GRRV
Sbjct: 147 SSSWSSLPPAESSAHRRLGCGPWRINPLRIAIGRRV 174
BLAST of IVF0025643 vs. TAIR 10
Match:
AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 1 MSRSSR--FYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKP-VR 60
+SR+S +Y R EGVPF+WEMQPGTP + P EV+ PP+SPPPA+LSLG KP +
Sbjct: 12 ISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQP-REVV-PPLSPPPAMLSLGLPKPSIS 71
Query: 61 VVQNKQSLF 67
+ + K +F
Sbjct: 72 IEEPKNFVF 78
BLAST of IVF0025643 vs. TAIR 10
Match:
AT4G25850.2 (OSBP(oxysterol binding protein)-related protein 4B )
HSP 1 Score: 62.0 bits (149), Expect = 4.7e-10
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query: 1 MSRSSR--FYYRRTTEGVPFQWEMQPGTPKSNPPLTEVIPPPISPPPAVLSLGFSKP-VR 60
+SR+S +Y R EGVPF+WEMQPGTP + P EV+ PP+SPPPA+LSLG KP +
Sbjct: 12 ISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQP-REVV-PPLSPPPAMLSLGLPKPSIS 71
Query: 61 VVQNKQSLF 67
+ + K +F
Sbjct: 72 IEEPKNFVF 78
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CJV8 | 4.6e-82 | 100.00 | Oxysterol-binding protein-related protein 4B-like OS=Cucumis melo var. makuwa OX... | [more] |
A0A0A0LUL8 | 2.2e-71 | 89.93 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1 | [more] |
A0A6J1KZJ1 | 3.0e-33 | 57.14 | uncharacterized protein LOC111499680 OS=Cucurbita maxima OX=3661 GN=LOC111499680... | [more] |
A0A6J1EQV3 | 8.9e-33 | 56.49 | uncharacterized protein LOC111436686 OS=Cucurbita moschata OX=3662 GN=LOC1114366... | [more] |
A0A540N405 | 8.3e-15 | 40.46 | Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008607 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAA0058273.1 | 3.18e-107 | 100.00 | oxysterol-binding protein-related protein 4B-like [Cucumis melo var. makuwa] >TY... | [more] |
XP_004146363.1 | 5.10e-93 | 89.93 | uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical ... | [more] |
XP_038878338.1 | 2.60e-78 | 77.85 | uncharacterized protein LOC120070597 [Benincasa hispida] | [more] |
XP_023007086.1 | 3.07e-43 | 58.06 | uncharacterized protein LOC111499680 [Cucurbita maxima] | [more] |
KAG6587751.1 | 9.02e-43 | 57.69 | hypothetical protein SDJN03_16316, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
AT4G25845.1 | 4.7e-10 | 52.17 | BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela... | [more] |
AT4G25850.2 | 4.7e-10 | 52.17 | OSBP(oxysterol binding protein)-related protein 4B | [more] |