IVF0025621 (gene) Melon (IVF77) v1

Overview


Name	IVF0025621
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	WD repeat containing protein
Location	chr02: 1862908 .. 1864965 (-)
RNA-Seq Expression	IVF0025621
Synteny	IVF0025621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACATTGCTTGCTTGACGCGCACACAAGAAAACACAAAATACCGAGTCAGCGGCGGGCAACCCATTGCCCATTGCCACGAATTCAAACTTCAACTACTTTCAATGACGGCCTCACGAGAGCCACTCCCATCTTCATCTTCATCAACTTACTTACCTCCAAATGATTCACTACCTAAACGCTTCAAGGTCTTGTGGCGGATTCTATTGATTTCCAATTTCGCGCTTTCAGGTTCACCCTACTATCTCCTCCTTGTACGTTTTCCTTTTTCCTCGCATTCTGTGATGGGGTATTTTTCTTTAATCCGAATCTCGATCTTGAACTTCCCAGATCCTGAAACGACTCTTGGAAGTGAAAAATGGAGTTTGTAATGAAAAGAATCTGTATGTTGAATGTTTTTGTTTTTGCACGCCAGGTGTTTGATGTAATGACTGTGATGGATTTCTTTGCTTAGTTGTAAAATATGTTGCTAGTTGCTGCTACTGCTATGATTAGTTTGTGGCATCTCTTTGTTTTTGTTGTCTGGATGATTCTTGCTTGGAAGAAAGTTGTTAATTTCACTATACTTCCAATGTATGGGATTTATAACCTGAGAGATAGAGGATTAGTAACATGCAAAAGTTGATATTAATAGAGAGAAATGTACGAGCACACGCAGGACTATTGAATTCGATATGTGCTGATCTTTGTGTTTGAATTCAAAAGATGAGATTGCTGAGAAAATGTGTCAATTTTCGTTGAATGGAGGACTCTCATGATGTGATATGCTATGGCTACTACAATATTGTTGCATATGCATAAAAGTTGGCTTAAACGAAATAGTAGGCTTAAACTTGTGGTTTTCTAACTAAAAACCCGAATCAAAGAGAGAAAGAGTGCCTATTCTCTCTTGAAGTCACGCGATCTGGTTAGTCTATGAATTGGAAACTATCAGTTTGGGAACGTAGTTGCTATGTAAACCAGCAGAAAAGAAACGAAAAGATTCTTATCTCTCTTAGACCATCTCAAGTCAGATTCATAACCAATCTGAGAGTCGGGGAAGACACAATATTTCCTTTTTATTAGATCTGCCCAATTCTTACATATTATGCAAGATCTCTTTAAATTTCAAATAAATGGTGGGTTGACATTAACTTTAAGCAGGAGAAAGAGGAAGGTGTAATCTCTTCAATTTCTCATCTAAGTAAGGTTAAACTTTAGATGATTCCTTCCTTATTTTCTCGAATGGTTTGGATTAGTTGATAATTGGTTCATTGATGATGAGGTAATAACCAAGATCACCTATTCAATTTCCTTTCCAAGTGAGCTTACTAGTCTTAATCTGAAGTCTGGCTATATACTTTCTTGCGCTTCTCTCTGAATTGATCATAGTTCTCTTTTTTTCTTCATTACATTGTGCTCGAAACTAGAATACCAGTATGGGTGACATTTACTTCAGCCACATGCCATGCAGTTGAATTTACTTTATTGGTGTCAAACATTAGTTGTCAGAGTGAGCTTAGCTCGACAAAACTAGCATGAACTTTCTCCTTTGAGGAGGGCGGTTGTTTGATTTACCACCCCAATTTTTGTTATGCAATTAAGACATCTACTCCTTCCTACAAGACCTTTGAACCCCTTCTTTTCACCCAAAGTTTTTATACTGAAAAGAAAACATTAAACATCAGTTTGCAATTGATGTGTATTATTCCATGCATTGCAGCCTACATGTTTGCAAGTGCAAGGAAGAGACATTTTAATGAGCTGGAGAATGACCAGGTAGAAAAACAAAGTGATAGTGAAATTATTACAGAAATCCCTTCAACAATTATGGTGGATACGACTGGCATAGTTACTGAGAACGTGTTGGAAGATCAGCAGCAAGAACCAAACCAAGGGGTGGTTAGTGGTTGGAGAGAAAAGTTAGGTTTTAGTAGAAAAATGAATTGATAGTGAGATGTTGATTCTTTAAACAGTTCATTCTCTCATAACCGGTTAAAGCTCATTCAGGTAAATATGGTTGGTTGCTGCAGAATTTTCTTTAAGACTATTTTGTAGGTAAATGATTTATTGCGGTAG

mRNA sequence

GGAACATTGCTTGCTTGACGCGCACACAAGAAAACACAAAATACCGAGTCAGCGGCGGGCAACCCATTGCCCATTGCCACGAATTCAAACTTCAACTACTTTCAATGACGGCCTCACGAGAGCCACTCCCATCTTCATCTTCATCAACTTACTTACCTCCAAATGATTCACTACCTAAACGCTTCAAGGTCTTGTGGCGGATTCTATTGATTTCCAATTTCGCGCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAGACATTTTAATGAGCTGGAGAATGACCAGGTAGAAAAACAAAGTGATAGTGAAATTATTACAGAAATCCCTTCAACAATTATGGTGGATACGACTGGCATAGTTACTGAGAACGTGTTGGAAGATCAGCAGCAAGAACCAAACCAAGGGGTGGTTAGTGGTTGGAGAGAAAAGTTAGGTTTTAGTAGAAAAATGAATTGATAGTGAGATGTTGATTCTTTAAACAGTTCATTCTCTCATAACCGGTTAAAGCTCATTCAGGTAAATATGGTTGGTTGCTGCAGAATTTTCTTTAAGACTATTTTGTAGGTAAATGATTTATTGCGGTAG

Coding sequence (CDS)

ATGACGGCCTCACGAGAGCCACTCCCATCTTCATCTTCATCAACTTACTTACCTCCAAATGATTCACTACCTAAACGCTTCAAGGTCTTGTGGCGGATTCTATTGATTTCCAATTTCGCGCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAGACATTTTAATGAGCTGGAGAATGACCAGGTAGAAAAACAAAGTGATAGTGAAATTATTACAGAAATCCCTTCAACAATTATGGTGGATACGACTGGCATAGTTACTGAGAACGTGTTGGAAGATCAGCAGCAAGAACCAAACCAAGGGGTGGTTAGTGGTTGGAGAGAAAAGTTAGGTTTTAGTAGAAAAATGAATTGA

Protein sequence

MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN

Homology

[Close]

BLAST of IVF0025621 vs. ExPASy TrEMBL
Match: A0A1S3BR82 (uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.5e-56
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60
           MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND
Sbjct: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 118
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 117

[Close]

BLAST of IVF0025621 vs. ExPASy TrEMBL
Match: A0A0A0M1X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.6e-53
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60
           MT  R PLPSSSSSTYLPPNDSLPKRFKVLWR+LLISNFALSAYMFASARKRHFN+LEND
Sbjct: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 118
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEP+QGVVSGWREKLGFSRK+N
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117

[Close]

BLAST of IVF0025621 vs. ExPASy TrEMBL
Match: A0A6J1HYA0 (uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467730 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.7e-29
Identity = 78/127 (61.42%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARK--------- 60
           M   R  L S SS   LPPND LP+RFKV+WR+LLISNFALSAYMFASARK         
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMESD 60

Query: 61  ---RHFNELENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWRE 116
              +   +LEND +EK SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENIPEDQHQKPFHWIVDGWRE 120

[Close]

BLAST of IVF0025621 vs. ExPASy TrEMBL
Match: A0A6J1EIP0 (uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC111433716 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.0e-28
Identity = 77/127 (60.63%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARK--------- 60
           M   R  L S SS   L PND LP+RFKV+WR+LLISNFALSAYMFASARK         
Sbjct: 1   MADPRASLSSLSSPPSLLPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENN 60

Query: 61  ---RHFNELENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWRE 116
              +   +LEND +EK SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120

[Close]

BLAST of IVF0025621 vs. ExPASy TrEMBL
Match: A0A6J1D315 (uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016544 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.7e-26
Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MTASREPLPSSSS-STYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEN 60
           MT  R PLPSSSS    LPPND LP+RFKV+WR+LLISNFAL+AYMFA+ARK+    +E 
Sbjct: 1   MTDPRAPLPSSSSPPPPLPPNDLLPRRFKVIWRVLLISNFALAAYMFANARKKDLGRMEK 60

Query: 61  DQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQ 101
           D VEK SD E++T IPST+MVDTT I  EN+ ED Q+EP Q
Sbjct: 61  DPVEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQ 101

[Close]

BLAST of IVF0025621 vs. NCBI nr
Match: XP_008450851.1 (PREDICTED: uncharacterized protein LOC103492320 [Cucumis melo])

HSP 1 Score: 232 bits (591), Expect = 1.09e-76
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60
           MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND
Sbjct: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 117
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 117

[Close]

BLAST of IVF0025621 vs. NCBI nr
Match: XP_004135711.1 (uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus])

HSP 1 Score: 220 bits (561), Expect = 4.11e-72
Identity = 110/117 (94.02%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60
           MT  R PLPSSSSSTYLPPNDSLPKRFKVLWR+LLISNFALSAYMFASARKRHFN+LEND
Sbjct: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRHFNQLEND 60

Query: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGFSRKMN 117
           QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEP+QGVVSGWREKLGFSRK+N
Sbjct: 61  QVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWREKLGFSRKVN 117

[Close]

BLAST of IVF0025621 vs. NCBI nr
Match: XP_011659979.1 (uncharacterized protein LOC101210247 isoform X2 [Cucumis sativus] >KGN66613.2 hypothetical protein Csa_007112 [Cucumis sativus])

HSP 1 Score: 145 bits (365), Expect = 1.52e-42
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 44  YMFASARKRHFNELENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVV 103
           YMFASARKRHFN+LENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEP+QGVV
Sbjct: 21  YMFASARKRHFNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVV 80

Query: 104 SGWREKLGFSRKMN 117
           SGWREKLGFSRK+N
Sbjct: 81  SGWREKLGFSRKVN 94

[Close]

BLAST of IVF0025621 vs. NCBI nr
Match: XP_023530326.1 (uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143 bits (360), Expect = 2.34e-41
Identity = 77/127 (60.63%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60
           M   R  L S SS   LPPND LP+RFKV+WR+LLISNFALSAYMFASARK+   ++END
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60

Query: 61  QVEKQ------------SDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWRE 115
           + EK             SDSEI+ EIPST+MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTLMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120

[Close]

BLAST of IVF0025621 vs. NCBI nr
Match: KAG6588036.1 (hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021933.1 hypothetical protein SDJN02_15661 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (358), Expect = 4.71e-41
Identity = 77/127 (60.63%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MTASREPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRHFNELEND 60
           M   R  L S SS   LPPND LP+RFKV+WR+LLISNFALSAYMFASARK+   ++END
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60

Query: 61  QVEKQ------------SDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWRE 115
           + EK             SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120

The following BLAST results are available for this feature:

BLAST of IVF0025621 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BR82	1.5e-56	100.00	uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=...	[more]
A0A0A0M1X9	4.6e-53	94.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1	[more]
A0A6J1HYA0	2.7e-29	61.42	uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EIP0	3.0e-28	60.63	uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC1114337...	[more]
A0A6J1D315	3.7e-26	65.35	uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of IVF0025621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450851.1	1.09e-76	100.00	PREDICTED: uncharacterized protein LOC103492320 [Cucumis melo]	[more]
XP_004135711.1	4.11e-72	94.02	uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus]	[more]
XP_011659979.1	1.52e-42	95.95	uncharacterized protein LOC101210247 isoform X2 [Cucumis sativus] >KGN66613.2 hy...	[more]
XP_023530326.1	2.34e-41	60.63	uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo]	[more]
KAG6588036.1	4.71e-41	60.63	hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0025621 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025621.2	IVF0025621.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane