IVF0025620 (gene) Melon (IVF77) v1

Overview


Name	IVF0025620
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA/RNA polymerases superfamily protein
Location	chr03: 14829223 .. 14829414 (-)
RNA-Seq Expression	IVF0025620
Synteny	IVF0025620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTTGCATTTCCAAGTTGTACCAAGAAGTAAATAATCACCTAGACCTCGCTAATGGTTCTTACAAAATGGCTACCAACTCTCACAAGCATTTTAAGGAGTATCAAGTGGATAACCTTGTTATGGTATATCTCTGCAAATCACGTCTTCCTGCTGATCATCATTCTAAAATGACTAACGCGCATTGA

mRNA sequence

ATGGCTGCTTGCATTTCCAAGTTGTACCAAGAAGTAAATAATCACCTAGACCTCGCTAATGGTTCTTACAAAATGGCTACCAACTCTCACAAGCATTTTAAGGAGTATCAAGTGGATAACCTTGTTATGGTATATCTCTGCAAATCACGTCTTCCTGCTGATCATCATTCTAAAATGACTAACGCGCATTGA

Coding sequence (CDS)

ATGGCTGCTTGCATTTCCAAGTTGTACCAAGAAGTAAATAATCACCTAGACCTCGCTAATGGTTCTTACAAAATGGCTACCAACTCTCACAAGCATTTTAAGGAGTATCAAGTGGATAACCTTGTTATGGTATATCTCTGCAAATCACGTCTTCCTGCTGATCATCATTCTAAAATGACTAACGCGCATTGA

Protein sequence

MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMTNAH

Homology

[Close]

BLAST of IVF0025620 vs. ExPASy TrEMBL
Match: A0A5A7U0R9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1280G00040 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.3e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
           MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT
Sbjct: 80  MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 139

Query: 61  NAH 64
           NAH
Sbjct: 140 NAH 142

[Close]

BLAST of IVF0025620 vs. ExPASy TrEMBL
Match: A0A5D3CMX2 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00160 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.2e-20
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
           MA  ISKLYQE+ NHL+L N SYKMATNSHKHFKEYQV +LVMVYL KSRLPADHHSKMT
Sbjct: 41  MADRISKLYQEIKNHLELPNDSYKMATNSHKHFKEYQVGDLVMVYLRKSRLPADHHSKMT 100

Query: 61  N 62
           N
Sbjct: 101 N 101

[Close]

BLAST of IVF0025620 vs. ExPASy TrEMBL
Match: A0A5D3DYV8 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00640 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
           MA  ISKL+QEV +HL+LAN SYK   NSHK F+EYQV +LVMVYL KSR P  HHSK+T
Sbjct: 41  MAERISKLHQEVKSHLELANDSYKTTANSHKRFREYQVGDLVMVYLQKSRFPTGHHSKIT 100

Query: 61  N 62
           N
Sbjct: 101 N 101

[Close]

BLAST of IVF0025620 vs. ExPASy TrEMBL
Match: A0A5D3E798 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008290 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.0e-14
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 5   ISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMTNAH 64
           I KL+QEV NHL+LAN SYK ATN+HK  KEYQV +LVMVYL KSR P+ HHSKMTN H
Sbjct: 45  IFKLHQEVKNHLELANDSYKAATNTHKRLKEYQVGDLVMVYLYKSRFPS-HHSKMTNKH 102

[Close]

BLAST of IVF0025620 vs. ExPASy TrEMBL
Match: A0A5D3C8T7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00750 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.9e-14
Identity = 44/61 (72.13%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 1  MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
          MA  ISKL Q+V NHL+LAN SYK A NSHK  KEYQV +LVM YL KSR PA HHSKMT
Sbjct: 6  MADRISKLNQKVKNHLELANDSYKTAANSHKCLKEYQVGDLVMAYLHKSRFPAGHHSKMT 65

Query: 61 N 62
          N
Sbjct: 66 N 66

[Close]

BLAST of IVF0025620 vs. NCBI nr
Match: KAA0047191.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK29734.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 3.78e-38
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
           MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT
Sbjct: 80  MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 139

Query: 61  NAH 63
           NAH
Sbjct: 140 NAH 142

[Close]

BLAST of IVF0025620 vs. NCBI nr
Match: TYK11579.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 1.08e-26
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
           MA  ISKLYQE+ NHL+L N SYKMATNSHKHFKEYQV +LVMVYL KSRLPADHHSKMT
Sbjct: 41  MADRISKLYQEIKNHLELPNDSYKMATNSHKHFKEYQVGDLVMVYLRKSRLPADHHSKMT 100

[Close]

BLAST of IVF0025620 vs. NCBI nr
Match: TYK28638.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 8.61e-20
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
           MA  ISKL+QEV +HL+LAN SYK   NSHK F+EYQV +LVMVYL KSR P  HHSK+T
Sbjct: 41  MAERISKLHQEVKSHLELANDSYKTTANSHKRFREYQVGDLVMVYLQKSRFPTGHHSKIT 100

[Close]

BLAST of IVF0025620 vs. NCBI nr
Match: KAA0047635.1 (hypothetical protein E6C27_scaffold115G001170 [Cucumis melo var. makuwa] >TYK08293.1 hypothetical protein E5676_scaffold648G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 2.10e-19
Identity = 44/61 (72.13%), Postives = 47/61 (77.05%), Query Frame = 0


Query: 1  MAACISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMT 60
          MA  ISKL Q+V NHL+LAN SYK A NSHK  KEYQV +LVM YL KSR PA HHSKMT
Sbjct: 6  MADRISKLNQKVKNHLELANDSYKTAANSHKCLKEYQVGDLVMAYLHKSRFPAGHHSKMT 65

[Close]

BLAST of IVF0025620 vs. NCBI nr
Match: KAA0063264.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK31510.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 6.08e-19
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 5   ISKLYQEVNNHLDLANGSYKMATNSHKHFKEYQVDNLVMVYLCKSRLPADHHSKMTNAH 63
           I KL+QEV NHL+LAN SYK ATN+HK  KEYQV +LVMVYL KSR P+ HHSKMTN H
Sbjct: 45  IFKLHQEVKNHLELANDSYKAATNTHKRLKEYQVGDLVMVYLYKSRFPS-HHSKMTNKH 102

The following BLAST results are available for this feature:

BLAST of IVF0025620 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0R9	7.3e-29	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold12...	[more]
A0A5D3CMX2	6.2e-20	83.61	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DYV8	2.3e-14	68.85	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3E798	3.0e-14	72.88	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3C8T7	3.9e-14	72.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0025620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047191.1	3.78e-38	100.00	reverse transcriptase [Cucumis melo var. makuwa] >TYK29734.1 reverse transcripta...	[more]
TYK11579.1	1.08e-26	83.61	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK28638.1	8.61e-20	68.85	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0047635.1	2.10e-19	72.13	hypothetical protein E6C27_scaffold115G001170 [Cucumis melo var. makuwa] >TYK082...	[more]
KAA0063264.1	6.08e-19	72.88	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK31510.1 Tran...	[more]

BLAST of IVF0025620 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025620.1	IVF0025620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity