IVF0025578 (gene) Melon (IVF77) v1

Overview


Name	IVF0025578
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	TSA1-like protein
Location	chr06: 11092522 .. 11092713 (-)
RNA-Seq Expression	IVF0025578
Synteny	IVF0025578

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAGGAGATTGAGAGCAAGAACAAAGAATATGAGATACTGCAGAGTAAATATGAGTTTCTGAGGCTTGACAATCTTACTCATGATTCCATGGTCGACCAAGACAAGATTGAGGTTGATCCTAAAGGATTTGGGAAGTGGAAGAAAACAATTGAGGAGTCGAAGGAGATGGAGAGTGAGATTCAATAA

mRNA sequence

ATGAGGAAGGAGATTGAGAGCAAGAACAAAGAATATGAGATACTGCAGAGTAAATATGAGTTTCTGAGGCTTGACAATCTTACTCATGATTCCATGGTCGACCAAGACAAGATTGAGGTTGATCCTAAAGGATTTGGGAAGTGGAAGAAAACAATTGAGGAGTCGAAGGAGATGGAGAGTGAGATTCAATAA

Coding sequence (CDS)

ATGAGGAAGGAGATTGAGAGCAAGAACAAAGAATATGAGATACTGCAGAGTAAATATGAGTTTCTGAGGCTTGACAATCTTACTCATGATTCCATGGTCGACCAAGACAAGATTGAGGTTGATCCTAAAGGATTTGGGAAGTGGAAGAAAACAATTGAGGAGTCGAAGGAGATGGAGAGTGAGATTCAATAA

Protein sequence

MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMESEIQ

Homology

[Close]

BLAST of IVF0025578 vs. ExPASy TrEMBL
Match: A0A5D3DX93 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001380 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.2e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEME+
Sbjct: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMEN 60

[Close]

BLAST of IVF0025578 vs. ExPASy TrEMBL
Match: A0A5A7TYB0 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001430 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.2e-24
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEME+
Sbjct: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMEN 60

[Close]

BLAST of IVF0025578 vs. ExPASy TrEMBL
Match: A0A0A0KYB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1   MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
           MRKEIESKNKEYE+LQSKYEFLRLDNLTH SMV+QDK+EVDPKGFGKWK+  EE KEMES
Sbjct: 52  MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVDPKGFGKWKERFEELKEMES 111

Query: 61  EIQ 64
           EIQ
Sbjct: 112 EIQ 114

[Close]

BLAST of IVF0025578 vs. ExPASy TrEMBL
Match: A0A5A7UY16 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00150 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-20
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYE LQSKYEFLRL NLTH SMVDQD IEVDPKGF K K+TIEESKEMES
Sbjct: 13 MRKEIESKNKEYEFLQSKYEFLRLKNLTHKSMVDQDNIEVDPKGFRKCKETIEESKEMES 72

Query: 61 EIQ 64
          EIQ
Sbjct: 73 EIQ 75

[Close]

BLAST of IVF0025578 vs. ExPASy TrEMBL
Match: A0A5A7TUZ5 (TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00230 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.1e-20
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYE+LQSKYEFLRLD+LTHDSMVD+DKIEVD KGFGK K+ IEES++MES
Sbjct: 1  MRKEIESKNKEYELLQSKYEFLRLDSLTHDSMVDEDKIEVDRKGFGKRKEPIEESRKMES 60

Query: 61 EIQ 64
          EIQ
Sbjct: 61 EIQ 63

[Close]

BLAST of IVF0025578 vs. NCBI nr
Match: KAA0048522.1 (TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 2.02e-29
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEME+
Sbjct: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMEN 60

[Close]

BLAST of IVF0025578 vs. NCBI nr
Match: TYK28313.1 (TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 2.02e-29
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEME+
Sbjct: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMEN 60

[Close]

BLAST of IVF0025578 vs. NCBI nr
Match: KAA0047373.1 (TSA1-like protein [Cucumis melo var. makuwa] >TYK14049.1 TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 1.55e-26
Identity = 54/63 (85.71%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYE+LQSKYEFLRLD+LTHDSMVD+DKIEVD KGFGK K+ IEES++MES
Sbjct: 1  MRKEIESKNKEYELLQSKYEFLRLDSLTHDSMVDEDKIEVDRKGFGKRKEPIEESRKMES 60

Query: 61 EIQ 63
          EIQ
Sbjct: 61 EIQ 63

[Close]

BLAST of IVF0025578 vs. NCBI nr
Match: KAA0059517.1 (TSA1-like protein [Cucumis melo var. makuwa] >TYK14100.1 TSA1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 1.66e-26
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
          MRKEIESKNKEYE LQSKYEFLRL NLTH SMVDQD IEVDPKGF K K+TIEESKEMES
Sbjct: 13 MRKEIESKNKEYEFLQSKYEFLRLKNLTHKSMVDQDNIEVDPKGFRKCKETIEESKEMES 72

Query: 61 EIQ 63
          EIQ
Sbjct: 73 EIQ 75

[Close]

BLAST of IVF0025578 vs. NCBI nr
Match: XP_031739615.1 (TSA1-like protein [Cucumis sativus])

HSP 1 Score: 108 bits (269), Expect = 1.32e-25
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1   MRKEIESKNKEYEILQSKYEFLRLDNLTHDSMVDQDKIEVDPKGFGKWKKTIEESKEMES 60
           MRKEIESKNKEYE+LQSKYEFLRLDNLTH SMV+QDK+EVDPKGFGKWK+  EE KEMES
Sbjct: 58  MRKEIESKNKEYELLQSKYEFLRLDNLTHKSMVEQDKVEVDPKGFGKWKERFEELKEMES 117

Query: 61  EIQ 63
           EIQ
Sbjct: 118 EIQ 120

The following BLAST results are available for this feature:

BLAST of IVF0025578 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025578 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX93	9.2e-24	98.33	TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00...	[more]
A0A5A7TYB0	9.2e-24	98.33	TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61G001...	[more]
A0A0A0KYB9	1.1e-21	87.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051390 PE=4 SV=1	[more]
A0A5A7UY16	4.7e-20	88.89	TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G0...	[more]
A0A5A7TUZ5	8.1e-20	85.71	TSA1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00...	[more]

BLAST of IVF0025578 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048522.1	2.02e-29	98.33	TSA1-like protein [Cucumis melo var. makuwa]	[more]
TYK28313.1	2.02e-29	98.33	TSA1-like protein [Cucumis melo var. makuwa]	[more]
KAA0047373.1	1.55e-26	85.71	TSA1-like protein [Cucumis melo var. makuwa] >TYK14049.1 TSA1-like protein [Cucu...	[more]
KAA0059517.1	1.66e-26	88.89	TSA1-like protein [Cucumis melo var. makuwa] >TYK14100.1 TSA1-like protein [Cucu...	[more]
XP_031739615.1	1.32e-25	87.30	TSA1-like protein [Cucumis sativus]	[more]

BLAST of IVF0025578 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 5..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025578.2	IVF0025578.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane