IVF0025562 (gene) Melon (IVF77) v1

Overview


Name	IVF0025562
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr11: 22987270 .. 22987695 (-)
RNA-Seq Expression	IVF0025562
Synteny	IVF0025562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTATACAGCCAGGGAATTGACCTATCGCAGGATGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATTTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTTTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTTGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTATACAGCCAGGGAATTGACCTATCGCAGGATGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATTTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTTTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTTGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTATACAGCCAGGGAATTGACCTATCGCAGGATGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATTTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTTTTCTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTTGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Protein sequence

MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGFVLMPEDEREGFCRVLLRDIER

Homology

[Close]

BLAST of IVF0025562 vs. ExPASy TrEMBL
Match: A0A5D3B6Y0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00160 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 9.8e-74
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282

[Close]

BLAST of IVF0025562 vs. ExPASy TrEMBL
Match: A0A5A7UZ66 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00390 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.3e-69
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGNEDFPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 154 MGDGNEDFPPVYSQGVDISQDDVRASRPSRAPEGRTGSSGSKRKRGSQRDFDVEAIHLAL 213

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPA NLANDNHVRTEFFCILREMPELTSLDRALLQRHLLS MDDLRGF
Sbjct: 214 DQTNEQLRQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSRMDDLRGF 273

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDERE FCRVLLRDIER
Sbjct: 274 VLMPEDERERFCRVLLRDIER 294

[Close]

BLAST of IVF0025562 vs. ExPASy TrEMBL
Match: A0A5A7VJG4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001280 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 7.3e-69
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGN+DFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLAL
Sbjct: 135 MGDGNKDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 194

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPA NLANDNHVRT+FFCILREMPELT+LDRALLQRHLLS MDDLRGF
Sbjct: 195 DQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRALLQRHLLSRMDDLRGF 254

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 255 VLMPEDEREGFCRVLLRDIER 275

[Close]

BLAST of IVF0025562 vs. ExPASy TrEMBL
Match: A0A5A7U086 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G002100 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.5e-69
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGN+DFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 137 MGDGNKDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 196

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPA NLANDNHVRTEFF ILREMPELTSLDRALLQRHLLS MDDLRGF
Sbjct: 197 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 256

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 257 VLMPEDEREGFCRVLLRDIER 277

[Close]

BLAST of IVF0025562 vs. ExPASy TrEMBL
Match: A0A5D3B9L6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002220 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 132/141 (93.62%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGN+DFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLAL
Sbjct: 135 MGDGNKDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 194

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPA NLANDNHVRT+FFCILREMPELT+LDRALLQRHLLS MDDLRGF
Sbjct: 195 DQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRALLQRHLLSRMDDLRGF 254

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 255 VLMPEDEREGFCRVLLRDIER 275

[Close]

BLAST of IVF0025562 vs. NCBI nr
Match: KAA0054705.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (731), Expect = 3.48e-95
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 142 MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 201

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF
Sbjct: 202 DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 261

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 262 VLMPEDEREGFCRVLLRDIER 282

[Close]

BLAST of IVF0025562 vs. NCBI nr
Match: KAA0058875.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (691), Expect = 6.19e-89
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGNEDFPPVYSQG+D+SQDDVRASRPSRA EGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 154 MGDGNEDFPPVYSQGVDISQDDVRASRPSRAPEGRTGSSGSKRKRGSQRDFDVEAIHLAL 213

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPA NLANDNHVRTEFFCILREMPELTSLDRALLQRHLLS MDDLRGF
Sbjct: 214 DQTNEQLRQIAEWPARNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSRMDDLRGF 273

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDERE FCRVLLRDIER
Sbjct: 274 VLMPEDERERFCRVLLRDIER 294

[Close]

BLAST of IVF0025562 vs. NCBI nr
Match: KAA0065821.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (689), Expect = 6.71e-89
Identity = 134/141 (95.04%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGN+DFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLAL
Sbjct: 135 MGDGNKDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 194

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPA NLANDNHVRT+FFCILREMPELT+LDRALLQRHLLS MDDLRGF
Sbjct: 195 DQTNEQLRQIAEWPARNLANDNHVRTKFFCILREMPELTNLDRALLQRHLLSRMDDLRGF 254

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 255 VLMPEDEREGFCRVLLRDIER 275

[Close]

BLAST of IVF0025562 vs. NCBI nr
Match: KAA0065692.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 267 bits (682), Expect = 9.57e-89
Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGNEDFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDF++EAIHLAL
Sbjct: 72  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 131

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLR+IAEWPA NLANDNHVRTEFF ILREMPELTSLDRALLQRHLLS MDDLRGF
Sbjct: 132 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 191

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 192 VLMPEDEREGFCRVLLRDIER 212

[Close]

BLAST of IVF0025562 vs. NCBI nr
Match: KAA0047011.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 269 bits (688), Expect = 1.02e-88
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGIDLSQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 60
           MGDGN+DFPPVYSQG+D+SQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL
Sbjct: 137 MGDGNKDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFDVEAIHLAL 196

Query: 61  DQTNEQLRQIAEWPACNLANDNHVRTEFFCILREMPELTSLDRALLQRHLLSCMDDLRGF 120
           DQTNEQLRQIAEWPA NLANDNHVRTEFF ILREMPELTSLDRALLQRHLLS MDDLRGF
Sbjct: 197 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 256

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 257 VLMPEDEREGFCRVLLRDIER 277

The following BLAST results are available for this feature:

BLAST of IVF0025562 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B6Y0	9.8e-74	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UZ66	4.3e-69	95.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VJG4	7.3e-69	95.04	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U086	9.5e-69	95.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3B9L6	1.6e-68	93.62	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0025562 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054705.1	3.48e-95	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95602.1 retrotransposon p...	[more]
KAA0058875.1	6.19e-89	95.74	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065821.1	6.71e-89	95.04	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065692.1	9.57e-89	94.33	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047011.1	1.02e-88	95.74	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025562 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025562.1	IVF0025562.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane