IVF0025559 (gene) Melon (IVF77) v1

Overview


Name	IVF0025559
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Chaperone protein ClpC1 chloroplastic
Location	chr08: 18029392 .. 18029628 (-)
RNA-Seq Expression	IVF0025559
Synteny	IVF0025559

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGAGAGCATAATCCCTTACTCAAGAAATACCAAGCCACACTTGGCAAAGCAAGCCTGTCCAATGAAGTAGACGAGCCTTCTCTAGTCGACGGTCCTGTGTCGGAGCGAAAAGGAGAAAGACAACCTCAAACAACTCTTATCAAAGGAGTTCGGATTCAACTGCTAAAGGATAAGTTAGGAGACCTACTCATCATCGTCTCTAGGGAGACTTCAAAGAAAGAAAAGAGCTGA

mRNA sequence

ATGTCAAGAGAGCATAATCCCTTACTCAAGAAATACCAAGCCACACTTGGCAAAGCAAGCCTGTCCAATGAAGTAGACGAGCCTTCTCTAGTCGACGGTCCTGTGTCGGAGCGAAAAGGAGAAAGACAACCTCAAACAACTCTTATCAAAGGAGTTCGGATTCAACTGCTAAAGGATAAGTTAGGAGACCTACTCATCATCGTCTCTAGGGAGACTTCAAAGAAAGAAAAGAGCTGA

Coding sequence (CDS)

ATGTCAAGAGAGCATAATCCCTTACTCAAGAAATACCAAGCCACACTTGGCAAAGCAAGCCTGTCCAATGAAGTAGACGAGCCTTCTCTAGTCGACGGTCCTGTGTCGGAGCGAAAAGGAGAAAGACAACCTCAAACAACTCTTATCAAAGGAGTTCGGATTCAACTGCTAAAGGATAAGTTAGGAGACCTACTCATCATCGTCTCTAGGGAGACTTCAAAGAAAGAAAAGAGCTGA

Protein sequence

MSREHNPLLKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQPQTTLIKGVRIQLLKDKLGDLLIIVSRETSKKEKS

Homology

[Close]

BLAST of IVF0025559 vs. ExPASy TrEMBL
Match: A0A5D3BW29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00040 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.5e-12
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQPQTTLIKGVRIQLLKDKLGDLLIIV 68
          LKKYQATLG+AS SN+V E S VDGP+ E+KGE Q +T +I GV+IQL KDKLGDLL IV
Sbjct: 11 LKKYQATLGEASPSNKVIEHSPVDGPMLEKKGEIQLKTVVINGVKIQLPKDKLGDLLTIV 70

Query: 69 SR 71
          SR
Sbjct: 71 SR 72

[Close]

BLAST of IVF0025559 vs. ExPASy TrEMBL
Match: A0A5A7SUZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00150 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.5e-10
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQP-QTTLIKGVRIQLLKDKLGDLLII 68
          LKKYQ T+GKASLSNE  E +  DG VSE++ E++P +  +I GV IQL +DKLGDLL I
Sbjct: 7  LKKYQGTVGKASLSNEGAEKTPSDGLVSEQRKEKRPLKMVIINGVEIQLTEDKLGDLLAI 66

Query: 69 VSRETSKKE 77
          +  ETSK+E
Sbjct: 67 IFGETSKRE 75

[Close]

BLAST of IVF0025559 vs. ExPASy TrEMBL
Match: A0A5D3C865 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001870 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQPQTTLIKGVRIQLLKDKLGDLLIIV 68
          LKKYQATLGKAS SNE  E S   GPV E K +   +   I  V+IQL +DKL DLL IV
Sbjct: 23 LKKYQATLGKASPSNEAVEHSPASGPVLEEKEKIPLKIVFINRVKIQLPEDKLQDLLAIV 82

Query: 69 SRETSKKEK 78
          S ETS+KE+
Sbjct: 83 SGETSRKEE 91

[Close]

BLAST of IVF0025559 vs. ExPASy TrEMBL
Match: A0A0A0K8A0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336460 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.9e-08
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 9  LKKYQATLGKAS-LSNEVDEPSLVDGPVSERKGERQPQTTLIKGVRIQLLKDKLGDLLII 68
          LKKYQAT+GKAS  S+ V+        + +RK E Q +  +I GV+IQLL+DKLG+LL I
Sbjct: 11 LKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLLEDKLGNLLAI 70

Query: 69 VSRETSKKEK 78
          VSRETSK+EK
Sbjct: 71 VSRETSKREK 80

[Close]

BLAST of IVF0025559 vs. ExPASy TrEMBL
Match: A0A5D3BV17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001510 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGER-QPQTTLIKGVRIQLLKDKLGDLLII 68
          L KYQ  +GKASLSN   E +    P+ E++ E+   +  +I  V IQL +DKL DLLII
Sbjct: 11 LMKYQQIVGKASLSNAKAEKTPSGSPMLEKRTEKCLFKKVVINEVEIQLPEDKLSDLLII 70

Query: 69 VSRETSKKEK 78
          VSRETSK+E+
Sbjct: 71 VSRETSKREE 80

[Close]

BLAST of IVF0025559 vs. NCBI nr
Match: KAA0034977.1 (hypothetical protein E6C27_scaffold57G00110 [Cucumis melo var. makuwa] >TYK02319.1 hypothetical protein E5676_scaffold155G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 3.61e-18
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQPQTTLIKGVRIQLLKDKLGDLLIIV 68
          LKKYQATLG+AS SN+V E S VDGP+ E+KGE Q +T +I GV+IQL KDKLGDLL IV
Sbjct: 11 LKKYQATLGEASPSNKVIEHSPVDGPMLEKKGEIQLKTVVINGVKIQLPKDKLGDLLTIV 70

Query: 69 SR 70
          SR
Sbjct: 71 SR 72

[Close]

BLAST of IVF0025559 vs. NCBI nr
Match: KAA0033147.1 (hypothetical protein E6C27_scaffold269G002910 [Cucumis melo var. makuwa] >TYK17087.1 hypothetical protein E5676_scaffold1032G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.75e-13
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQP-QTTLIKGVRIQLLKDKLGDLLII 68
          LKKYQ T+GKASLSNE  E +  DG VSE++ E++P +  +I GV IQL +DKLGDLL I
Sbjct: 7  LKKYQGTVGKASLSNEGAEKTPSDGLVSEQRKEKRPLKMVIINGVEIQLTEDKLGDLLAI 66

Query: 69 VSRETSKKE 76
          +  ETSK+E
Sbjct: 67 IFGETSKRE 75

[Close]

BLAST of IVF0025559 vs. NCBI nr
Match: KGN44567.1 (hypothetical protein Csa_016483 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.85e-12
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 9  LKKYQATLGKAS-LSNEVDEPSLVDGPVSERKGERQPQTTLIKGVRIQLLKDKLGDLLII 68
          LKKYQAT+GKAS  S+ V+        + +RK E Q +  +I GV+IQLL+DKLG+LL I
Sbjct: 11 LKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLLEDKLGNLLAI 70

Query: 69 VSRETSKKEK 77
          VSRETSK+EK
Sbjct: 71 VSRETSKREK 80

[Close]

BLAST of IVF0025559 vs. NCBI nr
Match: KAA0048215.1 (hypothetical protein E6C27_scaffold63G001290 [Cucumis melo var. makuwa] >TYK08041.1 hypothetical protein E5676_scaffold265G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 4.09e-12
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQPQTTLIKGVRIQLLKDKLGDLLIIV 68
          LKKYQATLGKAS SNE  E S   GPV E K +   +   I  V+IQL +DKL DLL IV
Sbjct: 23 LKKYQATLGKASPSNEAVEHSPASGPVLEEKEKIPLKIVFINRVKIQLPEDKLQDLLAIV 82

Query: 69 SRETSKKE 76
          S ETS+KE
Sbjct: 83 SGETSRKE 90

[Close]

BLAST of IVF0025559 vs. NCBI nr
Match: TYK03307.1 (hypothetical protein E5676_scaffold298G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 5.70e-09
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 9  LKKYQATLGKASLSNEVDEPSLVDGPVSERKGERQP-QTTLIKGVRIQLLKDKLGDLLII 68
          L KYQ  +GKASLSN   E +    P+ E++ E+   +  +I  V IQL +DKL DLLII
Sbjct: 11 LMKYQQIVGKASLSNAKAEKTPSGSPMLEKRTEKCLFKKVVINEVEIQLPEDKLSDLLII 70

Query: 69 VSRETSKKE 76
          VSRETSK+E
Sbjct: 71 VSRETSKRE 79

The following BLAST results are available for this feature:

BLAST of IVF0025559 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025559 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BW29	4.5e-12	70.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SUZ4	5.5e-10	59.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C865	2.3e-08	59.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K8A0	3.9e-08	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336460 PE=4 SV=1	[more]
A0A5D3BV17	3.1e-05	51.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0025559 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034977.1	3.61e-18	70.97	hypothetical protein E6C27_scaffold57G00110 [Cucumis melo var. makuwa] >TYK02319...	[more]
KAA0033147.1	1.75e-13	59.42	hypothetical protein E6C27_scaffold269G002910 [Cucumis melo var. makuwa] >TYK170...	[more]
KGN44567.1	1.85e-12	57.14	hypothetical protein Csa_016483 [Cucumis sativus]	[more]
KAA0048215.1	4.09e-12	60.29	hypothetical protein E6C27_scaffold63G001290 [Cucumis melo var. makuwa] >TYK0804...	[more]
TYK03307.1	5.70e-09	52.17	hypothetical protein E5676_scaffold298G001510 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025559 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025559.1	IVF0025559.1	mRNA