IVF0025555 (gene) Melon (IVF77) v1

Overview
NameIVF0025555
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionPMD domain-containing protein
Locationchr12: 8964626 .. 8964811 (+)
RNA-Seq ExpressionIVF0025555
SyntenyIVF0025555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTCACAAAACAATGCTTGTCAGGAGTCCGACACCTCACAGTACTTTCTGATCGAAATCAACCAAGAGAAGATGGATTCGATTGCGCCGCATTGATCAAGATGAAGATCGACTGCGCCGCATTGAAGATGATCATCGTGTGTACCACATTGAAGAGGATGATCGTCTCGTCGCATTGA

mRNA sequence

ATGGTTTACTTCACAAAACAATGCTTGTCAGGAGTCCGACACCTCACAGTACTTTCTGATCGAAATCAACCAAGAGAAGATGGATTCGATTGCGCCGCATTGATCAAGATGAAGATCGACTGCGCCGCATTGAAGATGATCATCGTGTGTACCACATTGAAGAGGATGATCGTCTCGTCGCATTGA

Coding sequence (CDS)

ATGGTTTACTTCACAAAACAATGCTTGTCAGGAGTCCGACACCTCACAGTACTTTCTGATCGAAATCAACCAAGAGAAGATGGATTCGATTGCGCCGCATTGATCAAGATGAAGATCGACTGCGCCGCATTGAAGATGATCATCGTGTGTACCACATTGAAGAGGATGATCGTCTCGTCGCATTGA

Protein sequence

MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIVSSH
Homology
BLAST of IVF0025555 vs. ExPASy TrEMBL
Match: A0A5D3BR16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00600 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.3e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIVSS 60
          MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIVSS
Sbjct: 22 MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIVSS 81

Query: 61 H 62
          H
Sbjct: 82 H 82

BLAST of IVF0025555 vs. ExPASy TrEMBL
Match: A0A5D3BRM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00250 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 1   MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMI 58
           MVYFT++CLSGVRHL VLSDRNQPREDG DCAAL K+KIDC ALKMIIVC  LK MI
Sbjct: 60  MVYFTERCLSGVRHLVVLSDRNQPREDGLDCAAL-KIKIDCVALKMIIVCAALKMMI 115

BLAST of IVF0025555 vs. ExPASy TrEMBL
Match: A0A5A7U7S4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00150 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 38/61 (62.30%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTL--KRMIV 60
          MVYFT++ LSGV+HL V  DRNQ +EDG DC  L KMKI+C ALKM I C  L  K MI+
Sbjct: 35 MVYFTERFLSGVQHLVVSFDRNQLKEDGLDCTTL-KMKINCTALKMKIDCAALKMKMMII 94

BLAST of IVF0025555 vs. ExPASy TrEMBL
Match: A0A5A7TYW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00180 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0

Query: 1  MVYFTKQCLSGVRHLTVLSDRNQPREDGFD 31
          MVYFT++ LSGVRHL +LSDRNQPREDG +
Sbjct: 1  MVYFTERFLSGVRHLVILSDRNQPREDGLN 30

BLAST of IVF0025555 vs. ExPASy TrEMBL
Match: A0A5A7U2Q8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001390 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1   MVYFTKQCLSGVRHLTVLSDRNQPREDG 29
           MVYFT++ LSGVRHL +LSDRNQPREDG
Sbjct: 74  MVYFTERFLSGVRHLVILSDRNQPREDG 101

BLAST of IVF0025555 vs. NCBI nr
Match: KAA0052092.1 (hypothetical protein E6C27_scaffold578G00740 [Cucumis melo var. makuwa] >TYK00706.1 hypothetical protein E5676_scaffold1371G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 5.34e-35
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIVSS 60
          MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIVSS
Sbjct: 22 MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMIVSS 81

BLAST of IVF0025555 vs. NCBI nr
Match: TYK01658.1 (hypothetical protein E5676_scaffold128G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.54e-22
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0

Query: 1   MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLKRMI 57
           MVYFT++CLSGVRHL VLSDRNQPREDG DCAAL K+KIDC ALKMIIVC  LK MI
Sbjct: 60  MVYFTERCLSGVRHLVVLSDRNQPREDGLDCAAL-KIKIDCVALKMIIVCAALKMMI 115

BLAST of IVF0025555 vs. NCBI nr
Match: KAA0050427.1 (uncharacterized protein E6C27_scaffold175G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.91e-12
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 1  MVYFTKQCLSGVRHLTVLSDRNQPREDGFDCAALIKMKIDCAALKMIIVCTTLK 54
          MVYFT++ LSGV+HL V  DRNQ +EDG DC  L KMKI+C ALKM I C  LK
Sbjct: 35 MVYFTERFLSGVQHLVVSFDRNQLKEDGLDCTTL-KMKINCTALKMKIDCAALK 87

BLAST of IVF0025555 vs. NCBI nr
Match: KAA0057574.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 1.36e-06
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  MVYFTKQCLSGVRHLTVLSDRNQPREDG 28
          MVYFT++ LSGVRHL +LSDRNQPREDG
Sbjct: 17 MVYFTERFLSGVRHLVILSDRNQPREDG 44

BLAST of IVF0025555 vs. NCBI nr
Match: KAA0046555.1 (hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK28704.1 hypothetical protein E5676_scaffold403G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 4.07e-06
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 0

Query: 1  MVYFTKQCLSGVRHLTVLSDRNQPREDGFD 30
          MVYFT++ LSGVRHL +LSDRNQPREDG +
Sbjct: 1  MVYFTERFLSGVRHLVILSDRNQPREDGLN 30

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BR167.3e-26100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BRM41.1e-1682.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7S41.4e-0862.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TYW31.6e-0476.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U2Q82.7e-0482.14PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
KAA0052092.15.34e-35100.00hypothetical protein E6C27_scaffold578G00740 [Cucumis melo var. makuwa] >TYK0070... [more]
TYK01658.11.54e-2282.46hypothetical protein E5676_scaffold128G00250 [Cucumis melo var. makuwa][more]
KAA0050427.12.91e-1264.81uncharacterized protein E6C27_scaffold175G00150 [Cucumis melo var. makuwa][more]
KAA0057574.11.36e-0682.14putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0046555.14.07e-0676.67hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK2870... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025555.1IVF0025555.1mRNA