IVF0025542 (gene) Melon (IVF77) v1

Overview


Name	IVF0025542
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	chr04: 11922185 .. 11925295 (-)
RNA-Seq Expression	IVF0025542
Synteny	IVF0025542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCCCTTTCCACTCTCATCGTTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTGCTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGGTTCTTCTCTTACAATGGAACAACAATGGCTGATGATTTTAATGCTGTTATAAGTTATACAATAAGGACTTGACATTTGGTTTGATTTTTGTAGTTTCGGTTGATTTTCTTTTGCTCATGAGATTGTGAGATTGTGAGATTGTGGAAATTAGGAGGGTCGTGCCTGGCTTCTTATATAAATTTTGCATTTGTGTATTTCAGATCGAGTTTTTAAGTTGGTGACTTCTTCGAATTCTCTTTCTCCTATACGTTATGAATTATGATCACAACTTCGTTTGTTGGCACGAATCTGTAGATAATTAAGATGTTTGGTTTGATCAACGCATAAAGGTCCCAAATTCAGCCGGAAGGAACTGTTTGTGAACTAGTTAAACTAAAAATGGAACCACTACATTAAGAAATGCATTGGAAATTTGAATCTTCAATTAGGAGATTAACTTGTCCTAGTCTTCTTTCTGGTTACCAACAGCCGTATTTATAACTTACAACCCCAATTGACAATCATTTAGTTTTTTCATTCGAGTATTTTGGAAAGGTGTTCTCGTTTTTCCTTTACAATTGTCCTAGTCTATTAGTTTTCATCTTTTTTCAAAGTAACATTTCAAGCCTTAGCCAAATTTCAAAACAAAAATTACTTTTTTTTTTCCAAAACTTGTTGTGCATAACGAAACAAAGAAACTCGCCAGTGGAAATAGTGTTTATAAACTAAAATTTCAAAAAACTGAAAACCAAAGACCTACCCCATTTGATCACAATTTCGTTTTTAGTTTTCTTTGAAATTTATGTTTGTCTTCTCTCAGATTCTTTTATCATGATTTTCACCCTTTTAGATAATCATTTAAATTCTTAGAGAGTTTCAAAACAAAAAAAAAAAAAAAAATGGGATTTCAGAAACTACTTTTTCCAATTTTCAAAACTTGACTAGGTTTTTGAAAACATTTATAGAAAGCAAAGAAAAAGAAAAGAAAAGTTGGGAATAGTGTTTAAAGACTTGATTTTCAAAAACCAAATGGTTATCAAATAGAGCTGCCGTTTTTTTGTTGTGTTTGTTTTTTTTGAGGGAGTTGAGACTTGAGTGAGTCTGGTGGTGTTCTAACTTAGTGTCTCGTTTTCCGTTACACTTGTTATTCAACCTGAAATATGGCGTGTTCTAACTGTATATGGTTCTTTTAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTAAGTAATGATAATTAACATCCAAATTCACAATTATTCCCTTTCTCCTTTCCTCATGTAATTTGCCTTTTCTTGTGAGCAATAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTAAGTTGTCCTTATTAAACTTCGAAAAATTTAAATTGATGAAGTAAAATGGTTGCCTTTCTAGTCCTTGAACTGGTAATAACTTTTTGGTTTCAATACTGCTTCGAGCCCAAACATTCCGTTTTAGTTCATTTTGGTGGTTGTACTTTTAAAATGTTCATTTAGTCCTTATAGTTTTAACTAGTGACCATTTTGATCTTTTTGTTCAAATGTTATCATAATTTGTATCCGTAATAAAACCATCAAGTACAAATATATGACTGCTGACTAAACCATCATGGACTAGTCTAGTAGTAAAAAAGGAGACATAGTCTCAATAACTAACTAAGAGGTCATGAGTTCAATTCATGGTGGCCACATATCTAAGAATTAATTTTCCTTCAGATTAGTTGAGGTGCATGTAAGCTGGCTCAAACATTAACGAATATCATAGAATATATATATATGTGTGTGTGAGAAATTTAGTGAATGAATTGTTAAAAAGTGAAATGAAAATGAAGGGACCAAAATAGTTTTCTTATATATGTATAGAGATCAACATGGATATTTTAAAAGTTCATGCACCAAAAGGAAAAAGGAAAGAAAGTTGAAAGTACATGGATCGCAAAAGAACCAAAATTGGGAGTGCAGGAGCAAAGTAGTATTTAAGCCTAAACTTTTTCTTGTCTAATCTTCTAATGGAATAGATTGTTTCATTTCATTATTCAGCTGTCATAAGAAAAGGAAATAAACTTTTTTTCCAACTAATTCACCATACATAGGTAGTGGTTGTTTTTTTTTTTTTTTTCATTTTTCTTGCCATCCGTAGCCTAGTTATGTTCATGTTTGTTCTTGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGA

mRNA sequence

ATGGCGGTTTCCCTTTCCACTCTCATCGTTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTGCTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGA

Coding sequence (CDS)

ATGGCGGTTTCCCTTTCCACTCTCATCGTTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTGCTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGA

Protein sequence

MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Homology

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BLAST of IVF0025542 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 9.9e-23
Identity = 76/265 (28.68%), Postives = 117/265 (44.15%), Query Frame = 0


Query: 88  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDF 147
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 148 GAVALFAFLYFRENNAKNAQLARLT----------------------LRGIARLVICAGP 207
           G + +   L+  EN  +  Q+ ++T                      LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 208 ESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEF 267
           +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 268 DEREEVKDITSKRKK--LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 308
           D R +     SK K    ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

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BLAST of IVF0025542 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 1.9e-173
Identity = 316/338 (93.49%), Postives = 316/338 (93.49%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL--------- 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL         
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 -------------TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                        TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 317
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

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BLAST of IVF0025542 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 1.9e-173
Identity = 316/338 (93.49%), Postives = 316/338 (93.49%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL--------- 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL         
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 -------------TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                        TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 317
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

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BLAST of IVF0025542 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 6.9e-160
Identity = 295/338 (87.28%), Postives = 306/338 (90.53%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           MAVSL T  +SSFNNIAPPPHFSPTPSHNA DFKF RRS   VHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT-------- 180
           TQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARL+        
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 --------------LRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                         LRGIARLVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 317
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of IVF0025542 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 7.9e-140
Identity = 259/334 (77.54%), Postives = 281/334 (84.13%), Query Frame = 0


Query: 5   LSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHV 64
           +S  I+ S NN   PPH S T SHNA + KFCRR C HVHR  VSF+  P +  SLR+  
Sbjct: 47  VSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRYLQ 106

Query: 65  YGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 124
           Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL
Sbjct: 107 YRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 166

Query: 125 GALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL------------- 184
            ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARL             
Sbjct: 167 AALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 226

Query: 185 ---------TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNF 244
                    TLRGIARLVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNF
Sbjct: 227 DQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNF 286

Query: 245 EFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 304
           EFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Sbjct: 287 EFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRG 346

Query: 305 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 317
           SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 347 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of IVF0025542 vs. ExPASy TrEMBL
Match: A0A6J1BP58 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004502 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 6.7e-139
Identity = 262/338 (77.51%), Postives = 284/338 (84.02%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           M VS++   +SSFNN  PPPH   T SHNA +FKF R  C  VH KTV FSS P L  SL
Sbjct: 1   MVVSMAN--ISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           R     RRNLAN+  SAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RXLQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL--------- 180
           TQLL ALANSSRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL         
Sbjct: 121 TQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 -------------TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                        +LRGIARLVICAGPESF++EAF+SSEPFTEQLLERGV+VVP ATDV+
Sbjct: 181 KLRVDQSKVIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVS 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           +LNFEFDERE++KD+T+KRK+LWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDG
Sbjct: 241 SLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 317
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

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BLAST of IVF0025542 vs. NCBI nr
Match: XP_008447350.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA0037902.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa] >TYJ98034.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa])

HSP 1 Score: 621 bits (1602), Expect = 7.04e-224
Identity = 316/338 (93.49%), Postives = 316/338 (93.49%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL--------- 180
           TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL         
Sbjct: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 -------------TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                        TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 316
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of IVF0025542 vs. NCBI nr
Match: XP_004152010.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hypothetical protein Csa_017553 [Cucumis sativus])

HSP 1 Score: 576 bits (1485), Expect = 4.75e-206
Identity = 295/338 (87.28%), Postives = 306/338 (90.53%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           MAVSL T  +SSFNNIAPPPHFSPTPSHNA DFKF RRS   VHRKTVSFSSSPRLPVSL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           RF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RFLVYGRRNLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT-------- 180
           TQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARL+        
Sbjct: 121 TQLLGALANSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 --------------LRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                         LRGIARLVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVT
Sbjct: 181 KLRVDQNKVIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVT 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Sbjct: 241 TLNFEFDDREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 316
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of IVF0025542 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 533 bits (1372), Expect = 6.47e-189
Identity = 279/338 (82.54%), Postives = 291/338 (86.09%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           MAVSLST  +SS NNI  PPHFS T      DFKF RR C HVHRKT+SF+SSP LP SL
Sbjct: 1   MAVSLSTPNISSCNNITRPPHFSRTS-----DFKFRRRICCHVHRKTLSFNSSPTLPDSL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
               Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  PSLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL--------- 180
           TQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL         
Sbjct: 121 TQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 -------------TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                        TLRGIARLVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+
Sbjct: 181 KLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVS 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           TLNFEFDEREEVKD+T+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Sbjct: 241 TLNFEFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 316
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

[Close]

BLAST of IVF0025542 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 509 bits (1312), Expect = 4.82e-179
Identity = 261/338 (77.22%), Postives = 284/338 (84.02%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           M VS++  I+ S NN   PPH S T SHNA + KFCRR C HVHR  VSF+  P +  SL
Sbjct: 45  MVVSMA--IIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSL 104

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           R+  Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 105 RYLQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 164

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL--------- 180
           TQLL ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARL         
Sbjct: 165 TQLLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 224

Query: 181 -------------TLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                        TLRGIARLVICAGPESF++EAFK+SEPFTE+LLERGVLV+P ATD +
Sbjct: 225 KLRVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDAS 284

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           +LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Sbjct: 285 SLNFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDG 344

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 316
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of IVF0025542 vs. NCBI nr
Match: XP_022131239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_022131240.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia])

HSP 1 Score: 506 bits (1304), Expect = 1.63e-178
Identity = 262/338 (77.51%), Postives = 284/338 (84.02%), Query Frame = 0


Query: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60
           M VS++   +SSFNN  PPPH   T SHNA +FKF R  C  VH KTV FSS P L  SL
Sbjct: 1   MVVSMAN--ISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESL 60

Query: 61  RFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120
           R     RRNLAN+  SAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT
Sbjct: 61  RXLQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIAT 120

Query: 121 TQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT-------- 180
           TQLL ALANSSRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARL+        
Sbjct: 121 TQLLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNL 180

Query: 181 --------------LRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVT 240
                         LRGIARLVICAGPESF++EAF+SSEPFTEQLLERGV+VVP ATDV+
Sbjct: 181 KLRVDQSKVIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVS 240

Query: 241 TLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG 300
           +LNFEFDERE++KD+T+KRK+LWRLTPVYM EWSAWLDEQKKLAGVS++SPVYLSLRMDG
Sbjct: 241 SLNFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDG 300

Query: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 316
           RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of IVF0025542 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 335.9 bits (860), Expect = 3.6e-92
Identity = 182/321 (56.70%), Postives = 227/321 (70.72%), Query Frame = 0


Query: 21  HFSPTPSHNAPDFKFCRRSCFHVHRKTVSFS-SSPRLPVSLRFHVYGRRNLANYIYSAAD 80
           H S    + A +    RR   H HR+ + FS  + RL ++ +          N +  AAD
Sbjct: 31  HISKQALYQAKESYSHRRISRHNHRERLDFSHRNHRLTITRKQQPLS----FNTVCFAAD 90

Query: 81  KP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPD 140
           +P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+LGGLIAT++L+GALAN +R+ EV +
Sbjct: 91  EPSEISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLE 150

Query: 141 ILKGLGIDFGAVALFAFLYFRENNAKNAQLARLT-----------------------LRG 200
           I+KGLG+D GA +LFAFLYF EN  KNAQ+ARL+                       LRG
Sbjct: 151 IVKGLGVDIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRG 210

Query: 201 IARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEV-KDIT 260
           +ARLVICAGP  F+ EAFK S+ +T+ L+ERGV+VV  ATD  +   EFDE +   ++++
Sbjct: 211 VARLVICAGPAEFIEEAFKRSKEYTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMS 270

Query: 261 SKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALV 316
            +RKKLWR+TPV++ EW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A V
Sbjct: 271 QRRKKLWRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFV 330

[Close]

BLAST of IVF0025542 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-24
Identity = 76/265 (28.68%), Postives = 117/265 (44.15%), Query Frame = 0


Query: 88  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDF 147
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 148 GAVALFAFLYFRENNAKNAQLARLT----------------------LRGIARLVICAGP 207
           G + +   L+  EN  +  Q+ ++T                      LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 208 ESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEF 267
           +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 268 DEREEVKDITSKRKK--LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 308
           D R +     SK K    ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

The following BLAST results are available for this feature:

BLAST of IVF0025542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	9.9e-23	28.68	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of IVF0025542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BG35	1.9e-173	93.49	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BHU5	1.9e-173	93.49	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0L902	6.9e-160	87.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A6J1HGA1	7.9e-140	77.54	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1BP58	6.7e-139	77.51	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of IVF0025542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447350.1	7.04e-224	93.49	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA003...	[more]
XP_004152010.1	4.75e-206	87.28	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hyp...	[more]
XP_038888898.1	6.47e-189	82.54	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]
XP_022963501.1	4.82e-179	77.22	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350...	[more]
XP_022131239.1	1.63e-178	77.51	protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_0221312...	[more]

BLAST of IVF0025542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	3.6e-92	56.70	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	7.1e-24	28.68	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 84..161 e-value: 1.4E-26 score: 92.4
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 173..314
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 42..172
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 173..314
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 42..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025542.2	IVF0025542.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane