IVF0025476 (gene) Melon (IVF77) v1

Overview
NameIVF0025476
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 21160382 .. 21160712 (-)
RNA-Seq ExpressionIVF0025476
SyntenyIVF0025476
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAACCACTTGATGATATTACTAAAGTCTTTCATCTTGCTAAGAGGCTTAGGATATCGATACCAAGGTTTTCGAACAGTAATGTTATCAAAACCATCATATCCCTCTTTTAAGCAATTTGTTGTGGCTCTTAAGCACATGATGAAATGTTGTCTAATGAATTTAAAGAAGAAAAATTTGGACAAATCAACCATGCCCAAACTTTTTACAGCTAAAGAGGTCACAATAGGGGACGTGGGAGACAATTCTCTTCCCGTGGAAGAGGTTTTCCTCAAAGCAGATTCCAAGGAAATACAAGCTTCAAGCAAGCATCAAAATCAACCTTAA

mRNA sequence

ATGAAGAAACCACTTGATGATATTACTAAAGTCTTTCATCTTGCTAAGAGGCTTAGGATATCGATACCAAGGTTTTCGAACAGTAATCACATGATGAAATGTTGTCTAATGAATTTAAAGAAGAAAAATTTGGACAAATCAACCATGCCCAAACTTTTTACAGCTAAAGAGGTCACAATAGGGGACGTGGGAGACAATTCTCTTCCCGTGGAAGAGGTTTTCCTCAAAGCAGATTCCAAGGAAATACAAGCTTCAAGCAAGCATCAAAATCAACCTTAA

Coding sequence (CDS)

ATGAAGAAACCACTTGATGATATTACTAAAGTCTTTCATCTTGCTAAGAGGCTTAGGATATCGATACCAAGGTTTTCGAACAGTAATCACATGATGAAATGTTGTCTAATGAATTTAAAGAAGAAAAATTTGGACAAATCAACCATGCCCAAACTTTTTACAGCTAAAGAGGTCACAATAGGGGACGTGGGAGACAATTCTCTTCCCGTGGAAGAGGTTTTCCTCAAAGCAGATTCCAAGGAAATACAAGCTTCAAGCAAGCATCAAAATCAACCTTAA

Protein sequence

MKKPLDDITKVFHLAKRLRISIPRFSNSNHMMKCCLMNLKKKNLDKSTMPKLFTAKEVTIGDVGDNSLPVEEVFLKADSKEIQASSKHQNQP
Homology
[Close]
BLAST of IVF0025476 vs. ExPASy TrEMBL
Match: A0A0A0LJP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G027450 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 1  MKKPLDDITKVFHLAKRLRISIPRFSNSNHMMKCCLMNLKKKNLDKSTMPKLFTAKEVTI 60
          MKKPLDD TKVFHLA+RLRISIP    S+   +CCLMNLKKK LDKS MPKLF AK+  +
Sbjct: 1  MKKPLDDGTKVFHLARRLRISIP----SSLFKQCCLMNLKKKILDKSIMPKLFIAKDAAV 60

Query: 61 GDVGDNSLPVEEVFLKADSKEIQA 85
           DV DNSL VEE+FLKADSK+I+A
Sbjct: 61 EDVRDNSLLVEEIFLKADSKKIRA 80

[Close]
BLAST of IVF0025476 vs. NCBI nr
Match: KGN60932.1 (hypothetical protein Csa_021267 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 2.90e-31
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 1  MKKPLDDITKVFHLAKRLRISIPRFSNSNHMMKCCLMNLKKKNLDKSTMPKLFTAKEVTI 60
          MKKPLDD TKVFHLA+RLRISIP    S+   +CCLMNLKKK LDKS MPKLF AK+  +
Sbjct: 1  MKKPLDDGTKVFHLARRLRISIP----SSLFKQCCLMNLKKKILDKSIMPKLFIAKDAAV 60

Query: 61 GDVGDNSLPVEEVFLKADSKEIQA 84
           DV DNSL VEE+FLKADSK+I+A
Sbjct: 61 EDVRDNSLLVEEIFLKADSKKIRA 80

The following BLAST results are available for this feature:
BLAST of IVF0025476 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0025476 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJP81.6e-2171.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G027450 PE=4 SV=1[more]
BLAST of IVF0025476 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60932.12.90e-3171.43hypothetical protein Csa_021267 [Cucumis sativus][more]
BLAST of IVF0025476 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025476.1IVF0025476.1mRNA