IVF0025468 (gene) Melon (IVF77) v1

Overview


Name	IVF0025468
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 23800948 .. 23801124 (+)
RNA-Seq Expression	IVF0025468
Synteny	IVF0025468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCATCGGACAATGCACGAAGAGAAGATTGGAGTGTGGCGGCGGATGGCTTGCGCGGACGAGAACGGGATGACGGTGAGGAAGGGCTTCAACGTGCGGCAACTGCAGGTGGGAGTGTCGGAGAATCGCAGTTGCTGGTCGGCGTTGACGGAGAAGAAGAAGAAGAAGATTGA

mRNA sequence

ATGGCCTCATCGGACAATGCACGAAGAGAAGATTGGAGTGTGGCGGCGGATGGCTTGCGCGGACGAGAACGGGATGACGGTGAGGAAGGGCTTCAACGTGCGGCAACTGCAGGTGGGAGTGTCGGAGAATCGCAGTTGCTGGTCGGCGTTGACGGAGAAGAAGAAGAAGAAGATTGA

Coding sequence (CDS)

ATGGCCTCATCGGACAATGCACGAAGAGAAGATTGGAGTGTGGCGGCGGATGGCTTGCGCGGACGAGAACGGGATGACGGTGAGGAAGGGCTTCAACGTGCGGCAACTGCAGGTGGGAGTGTCGGAGAATCGCAGTTGCTGGTCGGCGTTGACGGAGAAGAAGAAGAAGAAGATTGA

Protein sequence

MASSDNARREDWSVAADGLRGRERDDGEEGLQRAATAGGSVGESQLLVGVDGEEEEED

Homology

[Close]

BLAST of IVF0025468 vs. ExPASy TrEMBL
Match: A0A5D3CVG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G001120 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   MASSDNARREDWSVAADGLRGRERDDGEEGLQRAATAGGSVGE 44
           +ASSDNARRE WSVAAD L G+ERDDGEE LQ AA  GG V E
Sbjct: 231 LASSDNARREVWSVAADSLSGQERDDGEEELQHAAAVGGGVEE 273

[Close]

BLAST of IVF0025468 vs. NCBI nr
Match: KAA0066189.1 (hypothetical protein E6C27_scaffold21G002020 [Cucumis melo var. makuwa] >TYK15228.1 hypothetical protein E5676_scaffold790G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.88e-09
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   MASSDNARREDWSVAADGLRGRERDDGEEGLQRAATAGGSVGE 43
           +ASSDNARRE WSVAAD L G+ERDDGEE LQ AA  GG V E
Sbjct: 231 LASSDNARREVWSVAADSLSGQERDDGEEELQHAAAVGGGVEE 273

The following BLAST results are available for this feature:

BLAST of IVF0025468 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVG5	3.6e-06	74.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0025468 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066189.1	4.88e-09	74.42	hypothetical protein E6C27_scaffold21G002020 [Cucumis melo var. makuwa] >TYK1522...	[more]

BLAST of IVF0025468 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025468.1	IVF0025468.1	mRNA