IVF0025392 (gene) Melon (IVF77) v1

Overview


Name	IVF0025392
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr05: 21037234 .. 21037578 (-)
RNA-Seq Expression	IVF0025392
Synteny	IVF0025392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTAATGCAACAACCAATTTTTCTGACATTATAGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACCAGAGGTTAGCAGAGGCTATAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAAGCACAAATCAATTTTTGGTCAGAGAAAACATGAGCAAAACTTTCCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAACTATGTACGAGCCAATACCTTCTCTGAAACTCCAAAACCCGTTAACTCAAATTCTCCTCGACCATTTGTACAGGATTAA

mRNA sequence

ATGATTGGTAATGCAACAACCAATTTTTCTGACATTATAGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACCAGAGGTTAGCAGAGGCTATAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAAGCACAAATCAATTTTTGGTCAGAGAAAACATGAGCAAAACTTTCCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAACTATGTACGAGCCAATACCTTCTCTGAAACTCCAAAACCCGTTAACTCAAATTCTCCTCGACCATTTGTACAGGATTAA

Coding sequence (CDS)

ATGATTGGTAATGCAACAACCAATTTTTCTGACATTATAGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACCAGAGGTTAGCAGAGGCTATAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAAGCACAAATCAATTTTTGGTCAGAGAAAACATGAGCAAAACTTTCCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAACTATGTACGAGCCAATACCTTCTCTGAAACTCCAAAACCCGTTAACTCAAATTCTCCTCGACCATTTGTACAGGATTAA

Protein sequence

MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQD

Homology

[Close]

BLAST of IVF0025392 vs. ExPASy TrEMBL
Match: A0A5A7T0H8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00180 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.8e-52
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 287 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHAIGFPNSG 346

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETPKPVNSNSPRPFVQ
Sbjct: 347 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSETPKPVNSNSPRPFVQ 399

[Close]

BLAST of IVF0025392 vs. ExPASy TrEMBL
Match: A0A5A7T0R1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00300 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.8e-52
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 231 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHAIGFPNSG 290

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETPKPVNSNSPRPFVQ
Sbjct: 291 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSETPKPVNSNSPRPFVQ 343

[Close]

BLAST of IVF0025392 vs. ExPASy TrEMBL
Match: A0A5A7T5W6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00370 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.2e-51
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYG IKKGTISKKKEGEVHAIGFPNSG
Sbjct: 287 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGRIKKGTISKKKEGEVHAIGFPNSG 346

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETPKPVNSNSPRPFVQ
Sbjct: 347 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSETPKPVNSNSPRPFVQ 399

[Close]

BLAST of IVF0025392 vs. ExPASy TrEMBL
Match: A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.5e-51
Identity = 103/113 (91.15%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 824 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHAIGFPNSG 883

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFG RK+EQNFPSYI+NVSHIPYN+YV A+T SETPKPVNSNSPRPFVQ
Sbjct: 884 KHKSIFGLRKYEQNFPSYINNVSHIPYNSYVPAHTVSETPKPVNSNSPRPFVQ 936

[Close]

BLAST of IVF0025392 vs. ExPASy TrEMBL
Match: A0A5D3C117 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00010 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.2e-51
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAE  TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 17  MIGNASTNFSDIIVIGERIEYGIKHGRLAELTTEYGGIKKGTISKKKEGEVHAIGFPNSG 76

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+  SETPKPVNSNSPRPFVQ
Sbjct: 77  KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHIVSETPKPVNSNSPRPFVQ 129

[Close]

BLAST of IVF0025392 vs. NCBI nr
Match: TYK23633.1 (uncharacterized protein E5676_scaffold4336G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (525), Expect = 6.55e-62
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVH IGFPNSG
Sbjct: 256 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHGIGFPNSG 315

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 113
           KHKSIF QRK+EQNFPSYISNVSHIPYN+YV A+T SET KPVNSNSPRPFVQ
Sbjct: 316 KHKSIFSQRKYEQNFPSYISNVSHIPYNSYVPAHTVSETSKPVNSNSPRPFVQ 368

[Close]

BLAST of IVF0025392 vs. NCBI nr
Match: KAA0036950.1 (uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (543), Expect = 1.29e-61
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 231 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHAIGFPNSG 290

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 113
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETPKPVNSNSPRPFVQ
Sbjct: 291 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSETPKPVNSNSPRPFVQ 343

[Close]

BLAST of IVF0025392 vs. NCBI nr
Match: KAA0036942.1 (uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (543), Expect = 1.80e-61
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 287 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHAIGFPNSG 346

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 113
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SETPKPVNSNSPRPFVQ
Sbjct: 347 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSETPKPVNSNSPRPFVQ 399

[Close]

BLAST of IVF0025392 vs. NCBI nr
Match: XP_008465589.1 (PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo])

HSP 1 Score: 203 bits (516), Expect = 2.68e-61
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFS+IIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 287 MIGNASTNFSNIIVIGERIEYGIKHGRLAEAKTEYGGIKKGTISKKKEGEVHAIGFPNSG 346

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 113
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SE PK  NSNSPRPFVQ
Sbjct: 347 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSEAPKLFNSNSPRPFVQ 399

[Close]

BLAST of IVF0025392 vs. NCBI nr
Match: TYK04059.1 (uncharacterized protein E5676_scaffold3019G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (532), Expect = 1.94e-60
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 0


Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAE  TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 17  MIGNASTNFSDIIVIGERIEYGIKHGRLAELTTEYGGIKKGTISKKKEGEVHAIGFPNSG 76

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 113
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+  SETPKPVNSNSPRPFVQ
Sbjct: 77  KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHIVSETPKPVNSNSPRPFVQ 129

The following BLAST results are available for this feature:

BLAST of IVF0025392 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T0H8	3.8e-52	92.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T0R1	3.8e-52	92.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7T5W6	3.2e-51	92.04	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
A0A5A7T1W2	5.5e-51	91.15	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C117	7.2e-51	91.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0025392 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23633.1	6.55e-62	90.27	uncharacterized protein E5676_scaffold4336G00020 [Cucumis melo var. makuwa]	[more]
KAA0036950.1	1.29e-61	92.92	uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]	[more]
KAA0036942.1	1.80e-61	92.92	uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]	[more]
XP_008465589.1	2.68e-61	89.38	PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo]	[more]
TYK04059.1	1.94e-60	91.15	uncharacterized protein E5676_scaffold3019G00010 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025392 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025392.1	IVF0025392.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity