IVF0025390 (gene) Melon (IVF77) v1

Overview


Name	IVF0025390
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr04: 6836189 .. 6836620 (+)
RNA-Seq Expression	IVF0025390
Synteny	IVF0025390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAAGAAGAGACTATTTTTTACTATAATGAGAGAGTTCTCGAAATTGCAAATGAGTCTTTTATTCTTAGAGAGAGGATTCCTAAGTCAAAGATAGTATGTAAAATGTTACAATCTTTGCTTAGTAAGTTTGATATGAAGGTAACTGCTATAGAGGAAGCGCATGACATTACTAAATTAAAATTAGATGAACTTTTTGGATCTCTAACTACTTTTGAGATGGTCATATCAAACAGAGATGATAAGAAAGGAAAGGGTGTTGCTTTCAAAACTGTGTATAAGGAAGAAACACTTGATCACAAGACCACAAATGAGGTTAATGTAAATGAATCTATTGCTCTGCCGACAAAACAATCCTCTAAAGTTGTCAAGAAATTCATAAATATGAACACCACCGGAGCTAGAGTTATAGAACAAAACTCATTTTGA

mRNA sequence

ATGTCTGAAGAAGAGACTATTTTTTACTATAATGAGAGAGTTCTCGAAATTGCAAATGAGTCTTTTATTCTTAGAGAGAGGATTCCTAAGTCAAAGATAGTATGTAAAATGTTACAATCTTTGCTTAGTAAGTTTGATATGAAGGTAACTGCTATAGAGGAAGCGCATGACATTACTAAATTAAAATTAGATGAACTTTTTGGATCTCTAACTACTTTTGAGATGGTCATATCAAACAGAGATGATAAGAAAGGAAAGGGTGTTGCTTTCAAAACTGTGTATAAGGAAGAAACACTTGATCACAAGACCACAAATGAGGTTAATGTAAATGAATCTATTGCTCTGCCGACAAAACAATCCTCTAAAGTTGTCAAGAAATTCATAAATATGAACACCACCGGAGCTAGAGTTATAGAACAAAACTCATTTTGA

Coding sequence (CDS)

ATGTCTGAAGAAGAGACTATTTTTTACTATAATGAGAGAGTTCTCGAAATTGCAAATGAGTCTTTTATTCTTAGAGAGAGGATTCCTAAGTCAAAGATAGTATGTAAAATGTTACAATCTTTGCTTAGTAAGTTTGATATGAAGGTAACTGCTATAGAGGAAGCGCATGACATTACTAAATTAAAATTAGATGAACTTTTTGGATCTCTAACTACTTTTGAGATGGTCATATCAAACAGAGATGATAAGAAAGGAAAGGGTGTTGCTTTCAAAACTGTGTATAAGGAAGAAACACTTGATCACAAGACCACAAATGAGGTTAATGTAAATGAATCTATTGCTCTGCCGACAAAACAATCCTCTAAAGTTGTCAAGAAATTCATAAATATGAACACCACCGGAGCTAGAGTTATAGAACAAAACTCATTTTGA

Protein sequence

MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITKLKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQSSKVVKKFINMNTTGARVIEQNSF

Homology

[Close]

BLAST of IVF0025390 vs. ExPASy TrEMBL
Match: A0A5D3BI07 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00650 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.3e-51
Identity = 115/143 (80.42%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           M EEE +  YNERVLEIANESF L ERI +S IVCK+L SL  KFDMKVTAIEEAHDI K
Sbjct: 1   MFEEENVTDYNERVLEIANESFNLGERIRESMIVCKVLLSLPGKFDMKVTAIEEAHDIPK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKL+ELFGSLTTFEM  S +DDKKGKGVAFKTVY+EET +H TTNEVNVNESIAL TKQ 
Sbjct: 61  LKLNELFGSLTTFEMATSKKDDKKGKGVAFKTVYEEETPNHNTTNEVNVNESIALLTKQF 120

Query: 121 SKVVKKFINMNTTGARVIEQNSF 144
           SKVVKKFINMNTTGA V EQNSF
Sbjct: 121 SKVVKKFINMNTTGAGVREQNSF 143

[Close]

BLAST of IVF0025390 vs. ExPASy TrEMBL
Match: A0A5D3BN48 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00240 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.2e-44
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           MSE+E++  YNERVLEIANES +L E+IPKSKIV K+LQSL  KFDMKVTAIEEAHDITK
Sbjct: 1   MSEDESVSNYNERVLEIANESLLLGEKIPKSKIVGKILQSLQGKFDMKVTAIEEAHDITK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKLDELFGSL TFE+ IS+++DKKGKG+AFK +Y+EET  + + N  N+NESIAL TKQ 
Sbjct: 61  LKLDELFGSLLTFEITISHKEDKKGKGIAFKPIYEEETTVNLSDNVANMNESIALLTKQF 120

Query: 121 SKVVKKFINMNTTGA 136
           SKVVKKF N+NTTG+
Sbjct: 121 SKVVKKFKNLNTTGS 135

[Close]

BLAST of IVF0025390 vs. ExPASy TrEMBL
Match: A0A5A7U3Y3 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001950 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           MSE+E++  YNERVLEIANES +L E+IP+SKIV KML+SLL KFDMKVTAIEEAHDITK
Sbjct: 1   MSEDESVSEYNERVLEIANESLLLGEKIPESKIVHKMLRSLLEKFDMKVTAIEEAHDITK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKLDELF SL +FE+ ISNR++KKGK VAFK+VY+EE+  +K+ ++ NVN+SIAL TKQ 
Sbjct: 61  LKLDELFMSLLSFEITISNRENKKGKSVAFKSVYEEESTVNKSESKANVNDSIALLTKQF 120

Query: 121 SKVVKKFINMNTTGA 136
           SK+VKKF NMN  G+
Sbjct: 121 SKIVKKFKNMNLIGS 135

[Close]

BLAST of IVF0025390 vs. ExPASy TrEMBL
Match: A0A5D3E0I8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold880G00230 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 94/143 (65.73%), Postives = 115/143 (80.42%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           MSE+E++F YNERVLEIANES +L E+IP SKIV K+LQSL  KFD KVTAIE+AHDIT 
Sbjct: 113 MSEDESVFEYNERVLEIANESLLLGEKIPDSKIVRKVLQSLPRKFDTKVTAIEKAHDITT 172

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKLDELFGSL TFEM IS+R++KKGK +AFK+ Y+EE + + + NEVN++ESIAL TKQ 
Sbjct: 173 LKLDELFGSLLTFEMAISDRENKKGKEIAFKSTYEEEAIVNHSDNEVNMDESIALLTKQF 232

Query: 121 SKVVKKFINMNTTGARVIEQNSF 144
           SKV ++F NMNTTG      N +
Sbjct: 233 SKVARRFRNMNTTGLNAQTSNQY 255

[Close]

BLAST of IVF0025390 vs. ExPASy TrEMBL
Match: A0A5A7T8I2 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00190 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 93/135 (68.89%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           MSE+E++  YN+RVL+I+NES +  E+IPKSKIV K+L+SLL KFDMKVT IEEAH+ITK
Sbjct: 1   MSEDESVSDYNKRVLKISNESLLFGEKIPKSKIVHKVLRSLLGKFDMKVTTIEEAHNITK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKL ELFGSL TFEM IS+R+DK GKG+AFK++YKEET  +++ N  NVNESIAL TKQ 
Sbjct: 61  LKLGELFGSLLTFEMAISHREDKNGKGIAFKSIYKEETTVNQSDNVANVNESIALLTKQF 120

Query: 121 SKVVKKFINMNTTGA 136
           SKVVKKF  +NTTG+
Sbjct: 121 SKVVKKFKKLNTTGS 135

[Close]

BLAST of IVF0025390 vs. NCBI nr
Match: TYJ98757.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 212 bits (540), Expect = 2.94e-67
Identity = 115/143 (80.42%), Postives = 122/143 (85.31%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           M EEE +  YNERVLEIANESF L ERI +S IVCK+L SL  KFDMKVTAIEEAHDI K
Sbjct: 1   MFEEENVTDYNERVLEIANESFNLGERIRESMIVCKVLLSLPGKFDMKVTAIEEAHDIPK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKL+ELFGSLTTFEM  S +DDKKGKGVAFKTVY+EET +H TTNEVNVNESIAL TKQ 
Sbjct: 61  LKLNELFGSLTTFEMATSKKDDKKGKGVAFKTVYEEETPNHNTTNEVNVNESIALLTKQF 120

Query: 121 SKVVKKFINMNTTGARVIEQNSF 143
           SKVVKKFINMNTTGA V EQNSF
Sbjct: 121 SKVVKKFINMNTTGAGVREQNSF 143

[Close]

BLAST of IVF0025390 vs. NCBI nr
Match: KAA0052069.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00684.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 6.33e-57
Identity = 98/135 (72.59%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           MSE+E++  YNERVLEIANES +L E+IPKSKIV K+LQSL  KFDMKVTAIEEAHDITK
Sbjct: 1   MSEDESVSNYNERVLEIANESLLLGEKIPKSKIVGKILQSLQGKFDMKVTAIEEAHDITK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKLDELFGSL TFE+ IS+++DKKGKG+AFK +Y+EET  + + N  N+NESIAL TKQ 
Sbjct: 61  LKLDELFGSLLTFEITISHKEDKKGKGIAFKPIYEEETTVNLSDNVANMNESIALLTKQF 120

Query: 121 SKVVKKFINMNTTGA 135
           SKVVKKF N+NTTG+
Sbjct: 121 SKVVKKFKNLNTTGS 135

[Close]

BLAST of IVF0025390 vs. NCBI nr
Match: KAA0048271.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (459), Expect = 2.96e-54
Identity = 95/135 (70.37%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           MSE+E++  YNERVLEIANES +L E+IP+SKIV KML+SLL KFDMKVTAIEEAHDITK
Sbjct: 1   MSEDESVSEYNERVLEIANESLLLGEKIPESKIVHKMLRSLLEKFDMKVTAIEEAHDITK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKLDELF SL +FE+ ISNR++KKGK VAFK+VY+EE+  +K+ ++ NVN+SIAL TKQ 
Sbjct: 61  LKLDELFMSLLSFEITISNRENKKGKSVAFKSVYEEESTVNKSESKANVNDSIALLTKQF 120

Query: 121 SKVVKKFINMNTTGA 135
           SK+VKKF NMN  G+
Sbjct: 121 SKIVKKFKNMNLIGS 135

[Close]

BLAST of IVF0025390 vs. NCBI nr
Match: TYK30726.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (451), Expect = 3.26e-54
Identity = 91/143 (63.64%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           M++ E +  YNERVLEIANES +L E++P+SKIVCK+L+SL  KFDMKVTAIEEAH+IT 
Sbjct: 1   MTKAELVSEYNERVLEIANESLLLGEKLPESKIVCKLLRSLPRKFDMKVTAIEEAHNITT 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKLDELF SL TFEM IS+R+ KKGKG+AFK++Y+++T  +++ NE NV+ESIAL TKQ 
Sbjct: 61  LKLDELFKSLPTFEMAISDRESKKGKGIAFKSIYEKKTTVNQSDNEANVDESIALLTKQF 120

Query: 121 SKVVKKFINMNTTGARVIEQNSF 143
           SKV++KF NMN TG+     N F
Sbjct: 121 SKVIRKFKNMNATGSNAQLSNQF 143

[Close]

BLAST of IVF0025390 vs. NCBI nr
Match: KAA0039550.1 (uncharacterized protein E6C27_scaffold744G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (456), Expect = 1.10e-53
Identity = 93/135 (68.89%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 1   MSEEETIFYYNERVLEIANESFILRERIPKSKIVCKMLQSLLSKFDMKVTAIEEAHDITK 60
           MSE+E++  YN+RVL+I+NES +  E+IPKSKIV K+L+SLL KFDMKVT IEEAH+ITK
Sbjct: 1   MSEDESVSDYNKRVLKISNESLLFGEKIPKSKIVHKVLRSLLGKFDMKVTTIEEAHNITK 60

Query: 61  LKLDELFGSLTTFEMVISNRDDKKGKGVAFKTVYKEETLDHKTTNEVNVNESIALPTKQS 120
           LKL ELFGSL TFEM IS+R+DK GKG+AFK++YKEET  +++ N  NVNESIAL TKQ 
Sbjct: 61  LKLGELFGSLLTFEMAISHREDKNGKGIAFKSIYKEETTVNQSDNVANVNESIALLTKQF 120

Query: 121 SKVVKKFINMNTTGA 135
           SKVVKKF  +NTTG+
Sbjct: 121 SKVVKKFKKLNTTGS 135

The following BLAST results are available for this feature:

BLAST of IVF0025390 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI07	5.3e-51	80.42	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A5D3BN48	8.2e-44	72.59	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371...	[more]
A0A5A7U3Y3	1.3e-41	70.37	Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3E0I8	2.9e-41	65.73	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold880G...	[more]
A0A5A7T8I2	2.9e-41	68.89	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of IVF0025390 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98757.1	2.94e-67	80.42	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]
KAA0052069.1	6.33e-57	72.59	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK00684.1 gag-pol polyprotein [...	[more]
KAA0048271.1	2.96e-54	70.37	Receptor-like protein 12 [Cucumis melo var. makuwa]	[more]
TYK30726.1	3.26e-54	63.64	gag-proteinase polyprotein [Cucumis melo var. makuwa]	[more]
KAA0039550.1	1.10e-53	68.89	uncharacterized protein E6C27_scaffold744G00190 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025390 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..75 e-value: 1.2E-6 score: 28.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025390.1	IVF0025390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding