IVF0025381 (gene) Melon (IVF77) v1

Overview


Name	IVF0025381
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	cytochrome c6, chloroplastic
Location	chr08: 133278 .. 135702 (+)
RNA-Seq Expression	IVF0025381
Synteny	IVF0025381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTTCTCTCCGTAACTTCAGATTTTGTTGGGCCTATCAGTAGCCCTCATTCCTTCCCACTAAATGTCTCTCTCTCTCTCCTTTTTTTTTTTATCTCTATGTATTTCTCCCTGCTGCAAACTGAGATTTCCAAGCCAACCAGGGAAACCGACGGACCATAGTTTGTCAAATTCGTACACACGTTAAGATTCTTCAGACCTTGGCTCCCCCTTTGATTGCGCTGCTTCTACCATTATCCCCCCTCAACAAAACCCCAGGTCCACTCATACACATTGCATAACTCACTATTTCTTAACCGCTCTAAACCTACGTTGTCGAACAAACCTATTCTTATTTTTACTCAAGCGGTATCATCATATTCTTCCGACTCTCTGGATTTTCTCAAATCCTTACTACCCTCAATCTTTGAATCTTTGTCATTTTTTTTTCCCAAACTTATATCGCCAAACAGATGCATGCTCATGAATTCTGGATTGTCGATTCGTGGATTTACAATTGGAAGCCTAAATACTGTTCTTGGTGTTCCTAAAATGTGAAACGATTTCTATTCGTTCTTTGTGTATTGTCATGGTTATGCATATATCCCATTAAGCGAAAATTACTCTACATTACTTGTTTAATTAGGGAACAAATGCATGTTAAATACTAATTTCCGTTCAGTAAAATTTGCATTCGCGTATTTTCCCCCCATTTTTGAGAAATAATTTCCATAAATCTCTCTAAACAATGATGTTTCCATAATTGATTTTTTATTTCTTACCCCTGACTTCACAAGTAAATGTTTCTATTTGAAAGTTAAGACAGATTGAGGTATCACAAATGCCTTAAGACCAACCATCAAATGACTCTGCTTTCTCTTTACGCGAATCAAAGATCTTATTGATATACAACTGTTTATACTATTTCCTGACTTGCTTTCGTCCGTGTAATTTATGTAACAGGATGTCTTGTGCTCGCCGAAACGACAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGTTATTGCTACTATCTCTCCTTACACTACTCTTTAATTTGGATAAGCATCTTAGTAGTTAGTTCATGCTAATATTAGCATGCTTTTCTGACTGTTTTAATTAGAATCGTATCCTGTTTGTTTGTTTTGCAATACCAACATCAGTGTCTTCCCTGAAACCTGTTTCATTTGTTTGATTCTGAATTTTTATTGATCATTCTATGATCTTACATGTATCTTCCATATGTTGAACTTGAAGTTGATGGTTCCCTTTTCTTTTTTCCTTTTTGCTATTCTTTCTGTGGAACATTTCTAGCTGCTTCTGTAACTGACTTTTTGTTTTCCTCTTTCCTAGGGTGCCACACTCTTTTCAAGTGATCTCGAAAGGTAAGCTTCTAGAACTTGAGAAAACATTAAGGTTTTTTATCAGTATATATGATCTCAGCCCAATGTGCGTGTATCACTGCCTACTAGTATCATGAGGTATTAGAACACAGATCTACTTTATCTTCTAATTATATATTCGATTTAAAAAAGATAATTGTTTACTTCTTTTTATTGTACAAGTGTGGCCATAGTCTTATATTGATTAGATTATAGATGAAGAAAGATTGTAGATTCATCGGTAAGGGCAATAGCTCTATCTATTGTTATATAAACATTTTGGTAGGGCCCAATTAATTTACATGGTCTTAACCTAAAAATGGGGTAAATCAAGCAAATATGCTTATGAACCGATTTTCTTTCACATAAAATTAAAACAGATACTTCACAATCACCTAAATTGGTTTAGTGTCCAAACACCGACACTTTGCCAATTTAGAAAGGTCGTTAATTTATAATGCACGCCTTTAACAATATTATTTAAAAAAAAAATCAATACAGTTTTATGTTGAGTCCAGATCAAATACTAGAGCTTTCAGAATTTCTCTATATCCAGCCGAGCCATATGCTTGAAATATGTTTACCACTTGTGTTTGTGAGGTGATTGAACAAATCTGAAAGATAATAAATGATTGTTTGTTGTCTTAGTTCTAGAGTTTAAAAGCCATCTTCTATCAATTAAAGACGAAGAAAAAGCATTCTAGAACTCTAAAATCTTCAAAGTTTTGGTTAATTGTTCTTTGTATAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGTAAGTGATAATTTGTTAATCTTATTCTATAACCGCGGAAATTTATATTTATATATATCAACACGATGCGTTTCAGGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTCTGGCGAAATTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

mRNA sequence

ATGCAACTTCTCTCCGTAACTTCAGATTTTGTTGGGCCTATCAGTAGCCCTCATTCCTTCCCACTAAATGGAAACCGACGGACCATAGTTTGTCAAATTCGTACACACGTTAAGATTCTTCAGACCTTGGCTCCCCCTTTGATTGCGCTGCTTCTACCATTATCCCCCCTCAACAAAACCCCAGGATGTCTTGTGCTCGCCGAAACGACAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTGATCTCGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTCTGGCGAAATTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

Coding sequence (CDS)

ATGCAACTTCTCTCCGTAACTTCAGATTTTGTTGGGCCTATCAGTAGCCCTCATTCCTTCCCACTAAATGGAAACCGACGGACCATAGTTTGTCAAATTCGTACACACGTTAAGATTCTTCAGACCTTGGCTCCCCCTTTGATTGCGCTGCTTCTACCATTATCCCCCCTCAACAAAACCCCAGGATGTCTTGTGCTCGCCGAAACGACAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTGATCTCGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAACCAAGGGGTCAGTGCACATTTGGTCCACGTTTGCAGGAGGAAGAAATTAGGCTTCTGGCGAAATTTGTAAAGATACAGGCAGATCGGGGGTGGCCAAACCCATAG

Protein sequence

MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKTPGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

Homology

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BLAST of IVF0025381 vs. ExPASy Swiss-Prot
Match: Q93VA3 (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-50
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 39  ILQTLAPPLIALLLPLSPLNKTPGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGA 98
           +L+ LAPPL A+LL +SP+   P    L +T +I+RG  LFN+ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPES--LGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 99  TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 158
           TLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 159 KIQADRGWP 168
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

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BLAST of IVF0025381 vs. ExPASy Swiss-Prot
Match: P25935 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=petJ PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 39/129 (30.23%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 38  KILQTLAPPLIALLLPLSPLNKTPGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPG 97
           +IL T    L+ LL  ++P          A+  ++  GG +F+  C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 98  ATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 157
            TL  +DL++ G  + E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 158 VKIQADRGW 167
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of IVF0025381 vs. ExPASy Swiss-Prot
Match: P07497 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petJ PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 39/129 (30.23%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 38  KILQTLAPPLIALLLPLSPLNKTPGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPG 97
           +IL T    L+ LL  ++P          A+  ++  GG +F+  C  CH GG N++ P 
Sbjct: 3   RILGTAIAALVVLLAFIAP----------AQAADLAHGGQVFSANCAACHLGGRNVVNPA 62

Query: 98  ATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKF 157
            TL  +DL++ G  + E I      GKG MP FG             +L  ++I  +A +
Sbjct: 63  KTLQKADLDQYGMASIEAITTQVTNGKGAMPAFGS------------KLSADDIADVASY 109

Query: 158 VKIQADRGW 167
           V  Q+++GW
Sbjct: 123 VLDQSEKGW 109

[Close]

BLAST of IVF0025381 vs. ExPASy Swiss-Prot
Match: P00110 (Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 0


Query: 71  EIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEI-YRITYYGKGRMPG 130
           +IE G  +F   C  CH GG N+I P  TL    LE NG +A   I Y++T  GK  MP 
Sbjct: 2   DIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVT-NGKNAMP- 61

Query: 131 FGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 167
                       FG RL + +I  +A +V  Q+++GW
Sbjct: 62  -----------AFGGRLSDSDIEDVANYVLSQSEQGW 85

[Close]

BLAST of IVF0025381 vs. ExPASy Swiss-Prot
Match: P00114 (Cytochrome c6 OS=Synechococcus lividus OX=33070 GN=petJ PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.5e-09
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 71  EIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGF 130
           ++  G  +F+  C  CH GGGN++    TL    LE+ G ++E+ I     +GK  MP  
Sbjct: 2   DLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMNSEDAIIYQVQHGKNAMP-- 61

Query: 131 GENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 167
                      F  RL +E+I+ +A +V  QA +GW
Sbjct: 62  ----------AFAGRLTDEQIQDVAAYVLDQAAKGW 85

[Close]

BLAST of IVF0025381 vs. ExPASy TrEMBL
Match: A0A1S3AYD3 (cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.7e-94
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
           PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of IVF0025381 vs. ExPASy TrEMBL
Match: A0A6J1EG38 (cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 138/169 (81.66%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           M+ LSVTSDF     SPH FPL   RRT VCQ+R  VKIL+TLAPPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDF---SLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
           PGC  LA++ EIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of IVF0025381 vs. ExPASy TrEMBL
Match: A0A0A0KPD1 (Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G538600 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.9e-74
Identity = 137/148 (92.57%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 22  LNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKTPGCLVLAETTEIERGGALFNQ 81
           L+G RRT VCQIRT VKIL+ L PPLIALLLPLSPLNKT GCLVLAET EIERGGALFNQ
Sbjct: 7   LSGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGCLVLAETIEIERGGALFNQ 66

Query: 82  ACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCT 141
           +CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY GKGRMPGFGENCKPRGQCT
Sbjct: 67  SCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQCT 126

Query: 142 FGPRLQEEEIRLLAKFVKIQADRGWPNP 170
           FGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 127 FGPRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of IVF0025381 vs. ExPASy TrEMBL
Match: A0A6J1KPJ4 (cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.9e-73
Identity = 135/169 (79.88%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           M+LLSV SDF     SPH F L   RRT VC++R  VK L+ LAPPLIA+L+ L PLNKT
Sbjct: 1   MRLLSVISDF---SLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKT 60

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
           PGC  LA++ EIERGGALF+ ACIGCHDGGGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of IVF0025381 vs. ExPASy TrEMBL
Match: A0A6J1CXZ2 (cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.8e-66
Identity = 131/170 (77.06%), Postives = 143/170 (84.12%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIR-THVKILQTLAPPLIALLLPLSPLNK 60
           M LLS  SDF   I+S H F + G R T VCQ R   +KI ++ APPLIA+L+ LSP+ K
Sbjct: 1   MHLLSAISDF--SIAS-HCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITK 60

Query: 61  TPGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRI 120
           TPGC  LA+T EIERGGALF+Q+CIGCHDGGGNIIQPGATLFSSDLERNGAD EEEIY I
Sbjct: 61  TPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADEEEEIYHI 120

Query: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170
           TYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQADRGW NP
Sbjct: 121 TYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP 165

[Close]

BLAST of IVF0025381 vs. NCBI nr
Match: XP_008439440.1 (PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo])

HSP 1 Score: 352 bits (904), Expect = 9.84e-123
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
           PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of IVF0025381 vs. NCBI nr
Match: XP_004134523.1 (cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protein Csa_003678 [Cucumis sativus])

HSP 1 Score: 305 bits (781), Expect = 5.83e-104
Identity = 150/169 (88.76%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           M LLSVTS FV P +SP+ FP  G RRT VCQIRT VKIL+ L PPLIALLLPLSPLNKT
Sbjct: 4   MHLLSVTSHFVAPNTSPYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKT 63

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
            GCLVLAET EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 64  SGCLVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 123

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169
           Y GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 124 YDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170

[Close]

BLAST of IVF0025381 vs. NCBI nr
Match: XP_038877732.1 (cytochrome c6, chloroplastic [Benincasa hispida])

HSP 1 Score: 301 bits (771), Expect = 1.70e-102
Identity = 144/169 (85.21%), Postives = 152/169 (89.94%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           M LLS TS+F     +PH FPL   RRT+VCQIRT VKIL +LAPPLIA+ L LSPLN+T
Sbjct: 1   MHLLSATSNFC---PTPHCFPLKEKRRTVVCQIRTQVKILNSLAPPLIAVFLALSPLNQT 60

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
           PGCL LA+T EIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT
Sbjct: 61  PGCLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP 166

[Close]

BLAST of IVF0025381 vs. NCBI nr
Match: XP_022926876.1 (cytochrome c6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 287 bits (735), Expect = 5.22e-97
Identity = 138/169 (81.66%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           M+ LSVTSDF     SPH FPL   RRT VCQ+R  VKIL+TLAPPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDFS---LSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKT 60

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
           PGC  LA++ EIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of IVF0025381 vs. NCBI nr
Match: XP_023517564.1 (cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285 bits (729), Expect = 4.29e-96
Identity = 137/169 (81.07%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60
           M+ LSVTSDF     SPH FPL   RRT VCQ+R  V IL+TLAPPLIA+L+ L PLNKT
Sbjct: 1   MRFLSVTSDFS---LSPHCFPLKVQRRTAVCQMRRQVTILKTLAPPLIAVLIALYPLNKT 60

Query: 61  PGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 120
           PGC  LA++ EIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+IT
Sbjct: 61  PGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQIT 120

Query: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169
           YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

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BLAST of IVF0025381 vs. TAIR 10
Match: AT5G45040.1 (Cytochrome c )

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-51
Identity = 92/129 (71.32%), Postives = 108/129 (83.72%), Query Frame = 0


Query: 39  ILQTLAPPLIALLLPLSPLNKTPGCLVLAETTEIERGGALFNQACIGCHDGGGNIIQPGA 98
           +L+ LAPPL A+LL +SP+   P    L +T +I+RG  LFN+ACIGCHD GGNIIQPGA
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPES--LGQTLDIQRGATLFNRACIGCHDTGGNIIQPGA 103

Query: 99  TLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFV 158
           TLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+FV
Sbjct: 104 TLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAEFV 163

Query: 159 KIQADRGWP 168
           K QAD+GWP
Sbjct: 164 KFQADQGWP 170

The following BLAST results are available for this feature:

BLAST of IVF0025381 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VA3	1.8e-50	71.32	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1	[more]
P25935	3.0e-10	30.23	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 G...	[more]
P07497	3.0e-10	30.23	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
P00110	1.2e-09	37.11	Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1	[more]
P00114	7.5e-09	32.29	Cytochrome c6 OS=Synechococcus lividus OX=33070 GN=petJ PE=1 SV=1	[more]

BLAST of IVF0025381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYD3	2.7e-94	100.00	cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1	[more]
A0A6J1EG38	1.1e-74	81.66	cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 ...	[more]
A0A0A0KPD1	6.9e-74	92.57	Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G53860...	[more]
A0A6J1KPJ4	9.9e-73	79.88	cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV...	[more]
A0A6J1CXZ2	1.8e-66	77.06	cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3...	[more]

BLAST of IVF0025381 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439440.1	9.84e-123	100.00	PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED...	[more]
XP_004134523.1	5.83e-104	88.76	cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protei...	[more]
XP_038877732.1	1.70e-102	85.21	cytochrome c6, chloroplastic [Benincasa hispida]	[more]
XP_022926876.1	5.22e-97	81.66	cytochrome c6, chloroplastic [Cucurbita moschata]	[more]
XP_023517564.1	4.29e-96	81.07	cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0025381 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45040.1	1.2e-51	71.32	Cytochrome c	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 68..169 e-value: 1.1E-38 score: 133.5
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 62..168
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 71..136 e-value: 1.3E-10 score: 41.4
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 70..162 score: 11.122213
IPR023655	Cytochrome c6	PANTHER	PTHR34688	CYTOCHROME C6, CHLOROPLASTIC	coord: 33..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025381.2	IVF0025381.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding