IVF0025346 (gene) Melon (IVF77) v1

Overview


Name	IVF0025346
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase epsilon chain, chloroplastic
Location	chr12: 1922157 .. 1922330 (-)
RNA-Seq Expression	IVF0025346
Synteny	IVF0025346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGA

mRNA sequence

ATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGA

Coding sequence (CDS)

ATGGCTTTGATGGGTGGTTTTGCTAGAATAGGGAATAATGAGGCCACTATTTTAGTCAATGATGGGGAGAAGGTTGGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCGGTAGCCAACTTGAGGAAAGGTCAGGGCAAGAGACAAAGAATCGAGGCAAATTGA

Protein sequence

MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN

Homology

[Close]

BLAST of IVF0025346 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.1e-20
Identity = 50/57 (87.72%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEAN 118

[Close]

BLAST of IVF0025346 vs. ExPASy Swiss-Prot
Match: P09468 (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpE PE=1 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-19
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEAN 116

[Close]

BLAST of IVF0025346 vs. ExPASy Swiss-Prot
Match: Q06RC3 (ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=atpE PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-19
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           +ALMGGFARIGNNE T+LVND E+  DIDPQEAQQTLEIA ANLRK +GKRQRIEAN
Sbjct: 60  VALMGGFARIGNNEITVLVNDAERGSDIDPQEAQQTLEIAEANLRKAEGKRQRIEAN 116

[Close]

BLAST of IVF0025346 vs. ExPASy Swiss-Prot
Match: Q332X2 (ATP synthase epsilon chain, chloroplastic OS=Lactuca sativa OX=4236 GN=atpE PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-19
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA A LRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEAALRKAEGKRQTIEAN 116

[Close]

BLAST of IVF0025346 vs. ExPASy Swiss-Prot
Match: Q14FF1 (ATP synthase epsilon chain, chloroplastic OS=Populus alba OX=43335 GN=atpE PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-19
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEVTVLVNDAEKGSDIDPQEAQQTLEIAEANLRKAEGKRQIIEAN 116

[Close]

BLAST of IVF0025346 vs. ExPASy TrEMBL
Match: A0A5D3BC62 (ATP synthase CF1 epsilon subunit (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002480 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.0e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
          MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
Sbjct: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 57

[Close]

BLAST of IVF0025346 vs. ExPASy TrEMBL
Match: A0A5A7VIY7 (ATP synthase epsilon subunit (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00270 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.1e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR 52
          MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR
Sbjct: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR 51

[Close]

BLAST of IVF0025346 vs. ExPASy TrEMBL
Match: A0A6H0ENP8 (ATP synthase epsilon chain, chloroplastic OS=Thladiantha dubia OX=210344 GN=atpE PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.0e-18
Identity = 51/57 (89.47%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK GDIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Sbjct: 62  MALMGGFARIGNNEITILVNDAEKAGDIDPQEAQQTLEIAEANLRKAQGKRQTIEAN 118

[Close]

BLAST of IVF0025346 vs. ExPASy TrEMBL
Match: E0XEI1 (ATP synthase epsilon chain, chloroplastic (Fragment) OS=Cuttsia viburnea OX=54176 GN=atpE PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 53  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 109

[Close]

BLAST of IVF0025346 vs. ExPASy TrEMBL
Match: E0XEH0 (ATP synthase epsilon chain, chloroplastic (Fragment) OS=Abrophyllum ornans OX=49579 GN=atpE PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-18
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
          MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 43 MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 99

[Close]

BLAST of IVF0025346 vs. NCBI nr
Match: TYJ97422.1 (ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 6.08e-31
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 57
          MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN
Sbjct: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 57

[Close]

BLAST of IVF0025346 vs. NCBI nr
Match: KAA0067718.1 (ATP synthase epsilon subunit [Cucumis melo var. makuwa])

HSP 1 Score: 101 bits (251), Expect = 9.90e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR 51
          MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR
Sbjct: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKR 51

[Close]

BLAST of IVF0025346 vs. NCBI nr
Match: YP_009751491.1 (CF1 subunit epsilon [Thladiantha dubia] >QIT03972.1 CF1 subunit epsilon [Thladiantha dubia])

HSP 1 Score: 99.4 bits (246), Expect = 5.89e-25
Identity = 51/57 (89.47%), Postives = 51/57 (89.47%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 57
           MALMGGFARIGNNE TILVND EK GDIDPQEAQQTLEIA ANLRK QGKRQ IEAN
Sbjct: 62  MALMGGFARIGNNEITILVNDAEKAGDIDPQEAQQTLEIAEANLRKAQGKRQTIEAN 118

[Close]

BLAST of IVF0025346 vs. NCBI nr
Match: ADM63624.1 (ATP synthase CF1 epsilon subunit, partial [Abrophyllum ornans])

HSP 1 Score: 98.2 bits (243), Expect = 9.66e-25
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 57
          MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 43 MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 99

[Close]

BLAST of IVF0025346 vs. NCBI nr
Match: ADM63635.1 (ATP synthase CF1 epsilon subunit, partial [Cuttsia viburnea])

HSP 1 Score: 98.2 bits (243), Expect = 1.28e-24
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 57
           MALMGGFARIGNNE T+LVND EK GDIDPQEAQQTLEIA ANLRK +GKRQ+IEAN
Sbjct: 53  MALMGGFARIGNNEITVLVNDAEKSGDIDPQEAQQTLEIAEANLRKAEGKRQKIEAN 109

[Close]

BLAST of IVF0025346 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-20
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1   MALMGGFARIGNNEATILVNDGEKVGDIDPQEAQQTLEIAVANLRKGQGKRQRIEAN 58
           MALMGGFARIGNNE TILVND EK  DIDPQEAQQTLEIA ANLRK +GKRQ IEAN
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEAN 116

The following BLAST results are available for this feature:

BLAST of IVF0025346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZG9	4.1e-20	87.72	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
P09468	2.7e-19	85.96	ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp...	[more]
Q06RC3	4.6e-19	82.46	ATP synthase epsilon chain, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=at...	[more]
Q332X2	4.6e-19	84.21	ATP synthase epsilon chain, chloroplastic OS=Lactuca sativa OX=4236 GN=atpE PE=3...	[more]
Q14FF1	4.6e-19	84.21	ATP synthase epsilon chain, chloroplastic OS=Populus alba OX=43335 GN=atpE PE=3 ...	[more]

BLAST of IVF0025346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BC62	6.0e-22	100.00	ATP synthase CF1 epsilon subunit (Chloroplast) OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7VIY7	8.1e-19	100.00	ATP synthase epsilon subunit (Chloroplast) OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6H0ENP8	4.0e-18	89.47	ATP synthase epsilon chain, chloroplastic OS=Thladiantha dubia OX=210344 GN=atpE...	[more]
E0XEI1	9.0e-18	85.96	ATP synthase epsilon chain, chloroplastic (Fragment) OS=Cuttsia viburnea OX=5417...	[more]
E0XEH0	9.0e-18	85.96	ATP synthase epsilon chain, chloroplastic (Fragment) OS=Abrophyllum ornans OX=49...	[more]

BLAST of IVF0025346 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ97422.1	6.08e-31	100.00	ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa]	[more]
KAA0067718.1	9.90e-27	100.00	ATP synthase epsilon subunit [Cucumis melo var. makuwa]	[more]
YP_009751491.1	5.89e-25	89.47	CF1 subunit epsilon [Thladiantha dubia] >QIT03972.1 CF1 subunit epsilon [Thladia...	[more]
ADM63624.1	9.66e-25	85.96	ATP synthase CF1 epsilon subunit, partial [Abrophyllum ornans]	[more]
ADM63635.1	1.28e-24	85.96	ATP synthase CF1 epsilon subunit, partial [Cuttsia viburnea]	[more]

BLAST of IVF0025346 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00470.1	1.9e-20	85.96	ATP synthase epsilon chain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.480		coord: 30..57 e-value: 7.8E-12 score: 46.5
None	No IPR available	PANTHER	PTHR13822:SF10	ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC	coord: 1..57
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025346.1	IVF0025346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism