IVF0025339 (gene) Melon (IVF77) v1

Overview


Name	IVF0025339
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr06: 16037837 .. 16038217 (+)
RNA-Seq Expression	IVF0025339
Synteny	IVF0025339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGAACATTGATTGAAAGGGTTAGATGTATGTTATCAGAAGCCAAACTTCCTGAAGATTTTTGGGTTGAATCCCTAGCCACAGCAACATACACCACTAATAGAAGTCCTAGTATTTCTATCAACATGAAGACCCCTGAAGAAATGTGGAAGGGATCAGCTCCTGACTTATCAAACTTAAAGACCTTCAGATGCACAATCTATATACATACTAAGCAAAGTAAGGTGGAGCCTAGAGCTATAAAATGTATGTTCATAGGGTATCCTGAAGGAGTGAAAGGGTATAAGTGCTGGAACTTTATTTCAAACAGAAGCCTGATTAGTAGAGATGTGACTTTCAAAGAAGATGAGTTCTACATGAACTCTGAAACAAGCTAG

mRNA sequence

ATGAATAGAACATTGATTGAAAGGGTTAGATGTATGTTATCAGAAGCCAAACTTCCTGAAGATTTTTGGGTTGAATCCCTAGCCACAGCAACATACACCACTAATAGAAGTCCTAGTATTTCTATCAACATGAAGACCCCTGAAGAAATGTGGAAGGGATCAGCTCCTGACTTATCAAACTTAAAGACCTTCAGATGCACAATCTATATACATACTAAGCAAAGTAAGGTGGAGCCTAGAGCTATAAAATGTATGTTCATAGGGTATCCTGAAGGAGTGAAAGGGTATAAGTGCTGGAACTTTATTTCAAACAGAAGCCTGATTAGTAGAGATGTGACTTTCAAAGAAGATGAGTTCTACATGAACTCTGAAACAAGCTAG

Coding sequence (CDS)

ATGAATAGAACATTGATTGAAAGGGTTAGATGTATGTTATCAGAAGCCAAACTTCCTGAAGATTTTTGGGTTGAATCCCTAGCCACAGCAACATACACCACTAATAGAAGTCCTAGTATTTCTATCAACATGAAGACCCCTGAAGAAATGTGGAAGGGATCAGCTCCTGACTTATCAAACTTAAAGACCTTCAGATGCACAATCTATATACATACTAAGCAAAGTAAGGTGGAGCCTAGAGCTATAAAATGTATGTTCATAGGGTATCCTGAAGGAGTGAAAGGGTATAAGTGCTGGAACTTTATTTCAAACAGAAGCCTGATTAGTAGAGATGTGACTTTCAAAGAAGATGAGTTCTACATGAACTCTGAAACAAGCTAG

Protein sequence

MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSNLKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFYMNSETS

Homology

[Close]

BLAST of IVF0025339 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-24
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRT++E+VR ML  AKLP+ FW E++ TA Y  NRSPS+ +  + PE +W       S+
Sbjct: 588 MNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSH 647

Query: 61  LKTFRCTIYIHT---KQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKED 119
           LK F C  + H    +++K++ ++I C+FIGY +   GY+ W+ +  + + SRDV F+E 
Sbjct: 648 LKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRES 707

[Close]

BLAST of IVF0025339 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 98.2 bits (243), Expect = 7.0e-20
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISI--NMKTPEEMWKGSAPDL 60
           M RT+ E+ R M+S AKL + FW E++ TATY  NR PS ++  + KTP EMW    P L
Sbjct: 588 MIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYL 647

Query: 61  SNLKTFRCTIYIH--TKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKE 117
            +L+ F  T+Y+H   KQ K + ++ K +F+GY     G+K W+ ++ + +++RDV   E
Sbjct: 648 KHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEP--NGFKLWDAVNEKFIVARDVVVDE 705

[Close]

BLAST of IVF0025339 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-14
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1  MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
          MNRT+IE+VR ML E  LP+ F  ++  TA +  N+ PS +IN   P+E+W  S P  S 
Sbjct: 1  MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 61 LKTFRCTIYIHTKQSKVEPRAIK 84
          L+ F C  YIH  + K++PRA K
Sbjct: 61 LRRFGCVAYIHCDEGKLKPRAKK 83

[Close]

BLAST of IVF0025339 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-12
Identity = 36/121 (29.75%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 2   NRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSNL 61
           +R ++E    +LS A +P+ +W  + A A Y  NR P+  + +++P +   G++P+   L
Sbjct: 629 HRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKL 688

Query: 62  KTFRCTIYIHTK---QSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDE 120
           + F C  Y   +   Q K++ ++ +C+F+GY      Y C +  ++R  ISR V F E+ 
Sbjct: 689 RVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENC 748

[Close]

BLAST of IVF0025339 vs. ExPASy TrEMBL
Match: A0A5A7V1Q9 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002350 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.1e-67
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN
Sbjct: 51  MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 110

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY
Sbjct: 111 LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 170

Query: 121 MNSETS 127
           MNSETS
Sbjct: 171 MNSETS 176

[Close]

BLAST of IVF0025339 vs. ExPASy TrEMBL
Match: A0A5D3CIE0 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69664G00030 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 7.9e-67
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGS PDLSN
Sbjct: 51  MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSPPDLSN 110

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY
Sbjct: 111 LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 170

Query: 121 MNSETS 127
           MNSETS
Sbjct: 171 MNSETS 176

[Close]

BLAST of IVF0025339 vs. ExPASy TrEMBL
Match: A0A5D3BXB7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00480 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 110/126 (87.30%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTL+ERVRCMLSEAKLPEDFW E+LATATYT NRSPSISINMK PEEMW+GS PDLSN
Sbjct: 1   MNRTLMERVRCMLSEAKLPEDFWAEALATATYTINRSPSISINMKAPEEMWRGSPPDLSN 60

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTF CT Y+HTKQSKVEPRA+KCMFIGYP+GVKGY CWNF SNRSLISRDVTFKEDE Y
Sbjct: 61  LKTFGCTTYVHTKQSKVEPRALKCMFIGYPKGVKGYNCWNFTSNRSLISRDVTFKEDELY 120

Query: 121 MNSETS 127
           MNSET+
Sbjct: 121 MNSETT 126

[Close]

BLAST of IVF0025339 vs. ExPASy TrEMBL
Match: A0A5A7TF17 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold768G00060 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.1e-58
Identity = 109/126 (86.51%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTLI+RVRCMLSEAKLPEDFW E+LAT TY TNRSP+ISINMKT EEMWKGS PDLSN
Sbjct: 175 MNRTLIDRVRCMLSEAKLPEDFWAEALATTTYPTNRSPTISINMKTTEEMWKGSPPDLSN 234

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTF CT+Y+ TKQSKVEPRAIKC+FIGY EGVKG KCWNFISNRSLIS+DVTFKEDEFY
Sbjct: 235 LKTFGCTVYVQTKQSKVEPRAIKCIFIGYLEGVKGLKCWNFISNRSLISKDVTFKEDEFY 294

Query: 121 MNSETS 127
           MNSET+
Sbjct: 295 MNSETN 300

[Close]

BLAST of IVF0025339 vs. ExPASy TrEMBL
Match: A0A5D3CPM8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00430 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 4.5e-46
Identity = 86/123 (69.92%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1    MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
            MNRTL+ERVRCM+SEAK+ E FWV++LATATYT N+SP +SI+MKTPEE W G+ P LSN
Sbjct: 947  MNRTLMERVRCMISEAKISEKFWVKALATATYTVNKSPCVSIDMKTPEERWTGAIPKLSN 1006

Query: 61   LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
            LK F CT Y++ KQS++EPRA+KCMF+GYP+GVKGYK W+F   RSLISRDV FKE+E Y
Sbjct: 1007 LKPFGCTAYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIY 1066

Query: 121  MNS 124
            M S
Sbjct: 1067 MES 1069

[Close]

BLAST of IVF0025339 vs. NCBI nr
Match: KAA0060416.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 262 bits (670), Expect = 1.03e-87
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN
Sbjct: 51  MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 110

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY
Sbjct: 111 LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 170

Query: 121 MNSETS 126
           MNSETS
Sbjct: 171 MNSETS 176

[Close]

BLAST of IVF0025339 vs. NCBI nr
Match: TYK11325.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 260 bits (665), Expect = 5.94e-87
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGS PDLSN
Sbjct: 51  MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSPPDLSN 110

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY
Sbjct: 111 LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 170

Query: 121 MNSETS 126
           MNSETS
Sbjct: 171 MNSETS 176

[Close]

BLAST of IVF0025339 vs. NCBI nr
Match: TYK02789.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (603), Expect = 3.70e-75
Identity = 110/126 (87.30%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTL+ERVRCMLSEAKLPEDFW E+LATATYT NRSPSISINMK PEEMW+GS PDLSN
Sbjct: 1   MNRTLMERVRCMLSEAKLPEDFWAEALATATYTINRSPSISINMKAPEEMWRGSPPDLSN 60

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTF CT Y+HTKQSKVEPRA+KCMFIGYP+GVKGY CWNF SNRSLISRDVTFKEDE Y
Sbjct: 61  LKTFGCTTYVHTKQSKVEPRALKCMFIGYPKGVKGYNCWNFTSNRSLISRDVTFKEDELY 120

Query: 121 MNSETS 126
           MNSET+
Sbjct: 121 MNSETT 126

[Close]

BLAST of IVF0025339 vs. NCBI nr
Match: KAA0040137.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 231 bits (589), Expect = 1.34e-73
Identity = 109/126 (86.51%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 1   MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
           MNRTLI+RVRCMLSEAKLPEDFW E+LAT TY TNRSP+ISINMKT EEMWKGS PDLSN
Sbjct: 175 MNRTLIDRVRCMLSEAKLPEDFWAEALATTTYPTNRSPTISINMKTTEEMWKGSPPDLSN 234

Query: 61  LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
           LKTF CT+Y+ TKQSKVEPRAIKC+FIGY EGVKG KCWNFISNRSLIS+DVTFKEDEFY
Sbjct: 235 LKTFGCTVYVQTKQSKVEPRAIKCIFIGYLEGVKGLKCWNFISNRSLISKDVTFKEDEFY 294

Query: 121 MNSETS 126
           MNSET+
Sbjct: 295 MNSETN 300

[Close]

BLAST of IVF0025339 vs. NCBI nr
Match: KAA0043186.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 1.39e-53
Identity = 86/123 (69.92%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1    MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
            MNRTL+ERVRCM+SEAK+ E FWV++LATATYT N+SP +SI+MKTPEE W G+ P LSN
Sbjct: 943  MNRTLMERVRCMISEAKISEKFWVKALATATYTVNKSPCVSIDMKTPEERWTGAIPKLSN 1002

Query: 61   LKTFRCTIYIHTKQSKVEPRAIKCMFIGYPEGVKGYKCWNFISNRSLISRDVTFKEDEFY 120
            LK F CT Y++ KQS++EPRA+KCMF+GYP+GVKGYK W+F   RSLISRDV FKE+E Y
Sbjct: 1003 LKPFGCTAYVYIKQSQIEPRALKCMFVGYPDGVKGYKLWDFSKERSLISRDVVFKENEIY 1062

Query: 121  MNS 123
            M S
Sbjct: 1063 MES 1065

[Close]

BLAST of IVF0025339 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-15
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1  MNRTLIERVRCMLSEAKLPEDFWVESLATATYTTNRSPSISINMKTPEEMWKGSAPDLSN 60
          MNRT+IE+VR ML E  LP+ F  ++  TA +  N+ PS +IN   P+E+W  S P  S 
Sbjct: 1  MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 61 LKTFRCTIYIHTKQSKVEPRAIK 84
          L+ F C  YIH  + K++PRA K
Sbjct: 61 LRRFGCVAYIHCDEGKLKPRAKK 83

The following BLAST results are available for this feature:

BLAST of IVF0025339 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.1e-24	41.32	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	7.0e-20	40.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92512	1.5e-14	45.78	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	4.1e-12	29.75	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of IVF0025339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V1Q9	2.1e-67	100.00	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3CIE0	7.9e-67	99.21	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5D3BXB7	1.2e-59	87.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TF17	5.1e-58	86.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CPM8	4.5e-46	69.92	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of IVF0025339 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060416.1	1.03e-87	100.00	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
TYK11325.1	5.94e-87	99.21	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
TYK02789.1	3.70e-75	87.30	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0040137.1	1.34e-73	86.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0043186.1	1.39e-53	69.92	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025339 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	1.1e-15	45.78	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..78 e-value: 6.5E-9 score: 37.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..125
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025339.1	IVF0025339.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding