IVF0025291 (gene) Melon (IVF77) v1

Overview
NameIVF0025291
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr10: 10252291 .. 10252479 (-)
RNA-Seq ExpressionIVF0025291
SyntenyIVF0025291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTTGGAAGATACATTGTGGATGAAAAGAAGAACAAGGCTGTGAAGGAAGACCTGTGTGGTCAAAGTCCTAGTAGCATGCAGGGTGGGGAACATCGCAGTGAGAATAGGCGTTATGCACTAAGCGTTCAACAACAAGGAAATCTTGAAGCTCGTTCTCATGTTCGCCATCCAAGTTTAGAATGA

mRNA sequence

ATGAGAGTTGGAAGATACATTGTGGATGAAAAGAAGAACAAGGCTGTGAAGGAAGACCTGTGTGGTCAAAGTCCTAGTAGCATGCAGGGTGGGGAACATCGCAGTGAGAATAGGCGTTATGCACTAAGCGTTCAACAACAAGGAAATCTTGAAGCTCGTTCTCATGTTCGCCATCCAAGTTTAGAATGA

Coding sequence (CDS)

ATGAGAGTTGGAAGATACATTGTGGATGAAAAGAAGAACAAGGCTGTGAAGGAAGACCTGTGTGGTCAAAGTCCTAGTAGCATGCAGGGTGGGGAACATCGCAGTGAGAATAGGCGTTATGCACTAAGCGTTCAACAACAAGGAAATCTTGAAGCTCGTTCTCATGTTCGCCATCCAAGTTTAGAATGA

Protein sequence

MRVGRYIVDEKKNKAVKEDLCGQSPSSMQGGEHRSENRRYALSVQQQGNLEARSHVRHPSLE
Homology
BLAST of IVF0025291 vs. ExPASy TrEMBL
Match: A0A5D3CS54 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1275G00380 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-10
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 1   MRVGRYIVDEKKNKAVKEDLCGQSPSSMQGGEHRSENRRYALSVQQQGNLEARSHV 57
           MR+ R + +EKK K VKED C Q+PS MQGGEH +ENRRYAL VQQ+ N + RS+V
Sbjct: 131 MRIERCMANEKKKKVVKEDPCAQTPSRMQGGEHHNENRRYALGVQQRRNFKTRSYV 186

BLAST of IVF0025291 vs. NCBI nr
Match: TYK14641.1 (hypothetical protein E5676_scaffold1275G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 5.86e-14
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 1   MRVGRYIVDEKKNKAVKEDLCGQSPSSMQGGEHRSENRRYALSVQQQGNLEARSHV 56
           MR+ R + +EKK K VKED C Q+PS MQGGEH +ENRRYAL VQQ+ N + RS+V
Sbjct: 131 MRIERCMANEKKKKVVKEDPCAQTPSRMQGGEHHNENRRYALGVQQRRNFKTRSYV 186

BLAST of IVF0025291 vs. NCBI nr
Match: TYK21986.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 2.96e-06
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 1  MRVGRYIVDEKKNKAVKEDLCGQSPSSMQGGEHRSENRRY 40
          +RV R + DEKKNK VKE  CGQS S M+G E R+ENRR+
Sbjct: 39 IRVERCMADEKKNKIVKEKPCGQSTSGMRGSERRNENRRF 78

BLAST of IVF0025291 vs. NCBI nr
Match: KAA0047667.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK08322.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 1.07e-05
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 1   MRVGRYIVDEKKNKAVKEDLCGQSPSSMQGGEHRSENRRYALSVQQQGNLEARSH 55
           M V R  VDEK+NK +KEDL GQS S +  GE   ENRR    V+Q+GNL+  SH
Sbjct: 52  MGVERCFVDEKQNKILKEDLFGQSFSGIWSGERCDENRRPPSGVEQRGNLKHCSH 106

BLAST of IVF0025291 vs. NCBI nr
Match: KAA0045437.1 (hypothetical protein E6C27_scaffold294G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 46.2 bits (108), Expect = 3.76e-04
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 1   MRVGRYIVDEKKNKAVKEDLCGQSPSSMQGGEHRSENRRYALSV 44
           MRV R + DE+KNK +K    G S SS QG E  SENRR+AL V
Sbjct: 82  MRVERCLADEEKNKRLKSSHYGPSTSSAQGKERCSENRRFALCV 125

BLAST of IVF0025291 vs. NCBI nr
Match: TYK19798.1 (hypothetical protein E5676_scaffold307G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 46.2 bits (108), Expect = 4.59e-04
Identity = 25/44 (56.82%), Postives = 29/44 (65.91%), Query Frame = 0

Query: 1   MRVGRYIVDEKKNKAVKEDLCGQSPSSMQGGEHRSENRRYALSV 44
           MRV R + DE+KNK +K     QS SS QG E  SENRR+AL V
Sbjct: 95  MRVERCLADEEKNKRLKSSHYDQSTSSAQGKERCSENRRFALGV 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CS544.4e-1062.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK14641.15.86e-1462.50hypothetical protein E5676_scaffold1275G00380 [Cucumis melo var. makuwa][more]
TYK21986.12.96e-0662.50RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa][more]
KAA0047667.11.07e-0554.55Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK08322.1 Retrotranspos... [more]
KAA0045437.13.76e-0456.82hypothetical protein E6C27_scaffold294G00360 [Cucumis melo var. makuwa][more]
TYK19798.14.59e-0456.82hypothetical protein E5676_scaffold307G00270 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025291.1IVF0025291.1mRNA