IVF0025268 (gene) Melon (IVF77) v1

Overview
NameIVF0025268
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr12: 14947554 .. 14947727 (-)
RNA-Seq ExpressionIVF0025268
SyntenyIVF0025268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCGACGTTGGTCGTGGGTTTGCGGCATGTTCTAACATTTTGACGTCTATTGGAGTCGGTTTAGTCGACTTTCATGGGTTTAGCCGCAAGCAAGACGAAAATCCAAAAGTCTCCGGTCAGAGGAGCCGACAAGAAGAAAATCCAAGTATGAAGACTTTGAAAGGTTGA

mRNA sequence

ATGGCGTTCGACGTTGGTCGTGGGTTTGCGGCATGTTCTAACATTTTGACGTCTATTGGAGTCGGTTTAGTCGACTTTCATGGGTTTAGCCGCAAGCAAGACGAAAATCCAAAAGTCTCCGGTCAGAGGAGCCGACAAGAAGAAAATCCAAGTATGAAGACTTTGAAAGGTTGA

Coding sequence (CDS)

ATGGCGTTCGACGTTGGTCGTGGGTTTGCGGCATGTTCTAACATTTTGACGTCTATTGGAGTCGGTTTAGTCGACTTTCATGGGTTTAGCCGCAAGCAAGACGAAAATCCAAAAGTCTCCGGTCAGAGGAGCCGACAAGAAGAAAATCCAAGTATGAAGACTTTGAAAGGTTGA

Protein sequence

MAFDVGRGFAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG
Homology
BLAST of IVF0025268 vs. ExPASy TrEMBL
Match: A0A5A7UB76 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1192G00160 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-10
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 2  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTL 57
          +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN SMKTL
Sbjct: 23 SFDVSGNGLFLAAFAVHSNVLISLESGLVNFHGFSRKQAENPKVFGQRSRQEENQSMKTL 82

BLAST of IVF0025268 vs. ExPASy TrEMBL
Match: A0A5D3E5H8 (Reactive Intermediate Deaminase A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00600 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 23 LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG 58
          LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Sbjct: 62 LVNFHRFSRKQDENPKISGQRSRQEENPSMNTLKG 96

BLAST of IVF0025268 vs. ExPASy TrEMBL
Match: A0A5A7UFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002260 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-08
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 23 LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG 58
          LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Sbjct: 62 LVNFHRFSRKQDENPKISGQRSRQEENPSMNTLKG 96

BLAST of IVF0025268 vs. ExPASy TrEMBL
Match: A0A5D3BPV7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00390 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 2  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEEN 50
          +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN
Sbjct: 23 SFDVSGNGLFLAAFAVHSNVLISLESGLVNFHGFSRKQAENPKVFGQRSRQEEN 76

BLAST of IVF0025268 vs. NCBI nr
Match: KAA0053193.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 4.44e-13
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 2  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTL 56
          +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN SMKTL
Sbjct: 23 SFDVSGNGLFLAAFAVHSNVLISLESGLVNFHGFSRKQAENPKVFGQRSRQEENQSMKTL 82

BLAST of IVF0025268 vs. NCBI nr
Match: KAA0052379.1 (hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.41e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 23 LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG 57
          LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Sbjct: 62 LVNFHRFSRKQDENPKISGQRSRQEENPSMNTLKG 96

BLAST of IVF0025268 vs. NCBI nr
Match: TYK30860.1 (reactive Intermediate Deaminase A [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.27e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 23 LVDFHGFSRKQDENPKVSGQRSRQEENPSMKTLKG 57
          LV+FH FSRKQDENPK+SGQRSRQEENPSM TLKG
Sbjct: 62 LVNFHRFSRKQDENPKISGQRSRQEENPSMNTLKG 96

BLAST of IVF0025268 vs. NCBI nr
Match: TYK00149.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.37e-09
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0

Query: 2  AFDV-GRG-----FAACSNILTSIGVGLVDFHGFSRKQDENPKVSGQRSRQEEN 49
          +FDV G G     FA  SN+L S+  GLV+FHGFSRKQ ENPKV GQRSRQEEN
Sbjct: 23 SFDVSGNGLFLAAFAVHSNVLISLESGLVNFHGFSRKQAENPKVFGQRSRQEEN 76

BLAST of IVF0025268 vs. NCBI nr
Match: TYK11141.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 4.19e-05
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 0

Query: 22 GLVDFHGFSRKQDENPKVSGQRSRQEENPSMKTL 55
          GLV+FH FS KQD+NPKV  QRSRQEENP++ +L
Sbjct: 9  GLVNFHEFSHKQDKNPKVFCQRSRQEENPNIGSL 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UB765.3e-1068.85Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3E5H88.4e-0888.57Reactive Intermediate Deaminase A OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UFX38.4e-0888.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BPV75.4e-0766.67Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
KAA0053193.14.44e-1368.85ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052379.11.41e-1188.57hypothetical protein E6C27_scaffold207G002260 [Cucumis melo var. makuwa][more]
TYK30860.12.27e-1188.57reactive Intermediate Deaminase A [Cucumis melo var. makuwa][more]
TYK00149.12.37e-0966.67ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK11141.14.19e-0570.59putative mitochondrial protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025268.1IVF0025268.1mRNA