IVF0025218 (gene) Melon (IVF77) v1

Overview
NameIVF0025218
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr05: 16856957 .. 16857175 (-)
RNA-Seq ExpressionIVF0025218
SyntenyIVF0025218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACGGAGGGCGGCTGGGCGTCGACAGACACGGTCGGACGAAGGGTGCACGGCGGCGATTGGTTGCGTGAGACCGAGAGGGCGATCGAAAATGACGCGGCCGCGACGGTTGTACGCTGGCGTTGTGAAACCGACGACGACGGAGACGGAGACTGACGACCACCACAGAGAAGGAGACAGAGACGGACGAGCTTGCGAGTGGAATAGAAATAGATGA

mRNA sequence

ATGCGACGGAGGGCGGCTGGGCGTCGACAGACACGGTCGGACGAAGGGTGCACGGCGGCGATTGGTTGCGTGAGACCGAGAGGGCGATCGAAAATGACGCGGCCGCGACGGTTGTACGCTGGCGTTGTGAAACCGACGACGACGGAGACGGAGACTGACGACCACCACAGAGAAGGAGACAGAGACGGACGAGCTTGCGAGTGGAATAGAAATAGATGA

Coding sequence (CDS)

ATGCGACGGAGGGCGGCTGGGCGTCGACAGACACGGTCGGACGAAGGGTGCACGGCGGCGATTGGTTGCGTGAGACCGAGAGGGCGATCGAAAATGACGCGGCCGCGACGGTTGTACGCTGGCGTTGTGAAACCGACGACGACGGAGACGGAGACTGACGACCACCACAGAGAAGGAGACAGAGACGGACGAGCTTGCGAGTGGAATAGAAATAGATGA

Protein sequence

MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGDRDGRACEWNRNR
Homology
BLAST of IVF0025218 vs. ExPASy TrEMBL
Match: A0A5D3BG73 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00050 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.1e-16
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 1  MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 60
          M R+ AG RQTRSDEG T    CVRPRGRS+M RPR+L AGVV+PTTTETE  DHHR+GD
Sbjct: 1  MLRKTAGHRQTRSDEGRTTMSSCVRPRGRSEMVRPRQLNAGVVEPTTTETEMGDHHRDGD 60

Query: 61 RDG 64
          RDG
Sbjct: 61 RDG 63

BLAST of IVF0025218 vs. ExPASy TrEMBL
Match: E5GCG0 (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 52/78 (66.67%), Postives = 57/78 (73.08%), Query Frame = 0

Query: 1   MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 60
           MRRRAAGRRQTRSDEG T A G ++PRGRS+M RPRR   GV KPTTTET+T DHHR+GD
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  ------RDGRACEWNRNR 73
                  DG ACE  R R
Sbjct: 283 GDGDRGGDGDACERERWR 300

BLAST of IVF0025218 vs. ExPASy TrEMBL
Match: A0A5A7V558 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold508G00220 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.9e-07
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 2   RRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 61
           RRRA   R+T+ DEG TAA G VRPRG S+M  PRR  AGVV+  TTETET    REGD
Sbjct: 180 RRRATRHRRTQLDEGRTAASGYVRPRGSSEMDGPRRTKAGVVRLPTTETETVPPQREGD 238

BLAST of IVF0025218 vs. ExPASy TrEMBL
Match: A0A5A7SPB4 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold340G00420 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 1   MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKM 33
           MRRRAAGRRQTRSDEG T   GCVRPRGRS+M
Sbjct: 198 MRRRAAGRRQTRSDEGRTTVSGCVRPRGRSEM 229

BLAST of IVF0025218 vs. NCBI nr
Match: TYJ98074.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.70e-23
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 0

Query: 1  MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 60
          M R+ AG RQTRSDEG T    CVRPRGRS+M RPR+L AGVV+PTTTETE  DHHR+GD
Sbjct: 1  MLRKTAGHRQTRSDEGRTTMSSCVRPRGRSEMVRPRQLNAGVVEPTTTETEMGDHHRDGD 60

Query: 61 RDG 63
          RDG
Sbjct: 61 RDG 63

BLAST of IVF0025218 vs. NCBI nr
Match: ADN34159.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 94.7 bits (234), Expect = 3.50e-21
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 1   MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 60
           MRRRAAGRRQTRSDEG T A G ++PRGRS+M RPRR   GV KPTTTET+T DHHR+GD
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  RDG 63
            DG
Sbjct: 283 GDG 285

BLAST of IVF0025218 vs. NCBI nr
Match: KAA0063392.1 (hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.20e-10
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 2   RRRAAGRRQTRSDEGCTAAIGCVRPRGRSKMTRPRRLYAGVVKPTTTETETDDHHREGD 60
           RRRA   R+T+ DEG TAA G VRPRG S+M  PRR  AGVV+  TTETET    REGD
Sbjct: 180 RRRATRHRRTQLDEGRTAASGYVRPRGSSEMDGPRRTKAGVVRLPTTETETVPPQREGD 238

BLAST of IVF0025218 vs. NCBI nr
Match: KAA0032378.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31650.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 1.21e-06
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 1   MRRRAAGRRQTRSDEGCTAAIGCVRPRGRSKM 32
           MRRRAAGRRQTRSDEG T   GCVRPRGRS+M
Sbjct: 198 MRRRAAGRRQTRSDEGRTTVSGCVRPRGRSEM 229

BLAST of IVF0025218 vs. NCBI nr
Match: KAA0042021.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 2.42e-04
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0

Query: 3   RRAAGRRQTRSDEGCTAAIGCVRPRGRSKM 32
           R A GRR+TRSDEG T A GCVRPRGRSKM
Sbjct: 230 RSATGRRRTRSDEGRTVASGCVRPRGRSKM 259

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BG738.1e-1673.02NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
E5GCG01.4e-1566.67NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5A7V5586.9e-0762.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SPB42.4e-0484.38NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
TYJ98074.12.70e-2373.02NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
ADN34159.13.50e-2174.60NBS-LRR type resistance protein [Cucumis melo subsp. melo][more]
KAA0063392.12.20e-1062.71hypothetical protein E6C27_scaffold508G00220 [Cucumis melo var. makuwa][more]
KAA0032378.11.21e-0684.38NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK31650.1 NBS-LRR t... [more]
KAA0042021.12.42e-0480.00NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025218.1IVF0025218.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane