IVF0025212 (gene) Melon (IVF77) v1

Overview
NameIVF0025212
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description50S ribosomal protein L28
Locationtig00000135: 847933 .. 848847 (+)
RNA-Seq ExpressionIVF0025212
SyntenyIVF0025212
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACGCTCTTCCCAATTTACAAAGATAAACTCCATCAGTAACAATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTGCCGGTGTAATGGCAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTTCTCGCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTCCTGCTCCTCTCAGACCTTCCCTTCAACCTATTGCTCGTAATATCCCCCTCTCTTCTCAACTCTCGTTTAATATTTTGCTATATTTCATTTGTTCATCTTCAACCCCTTTTGGGGCTATACTTGAATTAATTGTATGGCTATGGCTGAAGCATTTTCTATTTCAATTAGGTTTCCTAATTCACCCATCATGTTCTGATTCCAATTTGGGCTATCTTTAATTTGTGAATTGGGAACCATCTCAAACTTGGTGGATTCATTATTTGTTGTTTCAGGTAGAATTTGTCCATTTACCGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCCTTCTCCAACCACAAGACCAAGAAATTGCAGTTCGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTTAATCTTAACTCATTTAGAATTTGAGGAAGATTTGTTTGTATTCCTGCTGTTTTTGCCTCTTCTTGCTTGCTAGTCATCTGTTTATTTTTCATAGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGGCAATGAAGCTGAAAAATCCATCCATTCT

mRNA sequence

AAACGCTCTTCCCAATTTACAAAGATAAACTCCATCAGTAACAATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTGCCGGTGTAATGGCAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTTCTCGCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTCCTGCTCCTCTCAGACCTTCCCTTCAACCTATTGCTCGTAGAATTTGTCCATTTACCGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCCTTCTCCAACCACAAGACCAAGAAATTGCAGTTCGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTTAATCTTAACTCATTTAGAATTTGAGGAAGATTTGTTTGTATTCCTGCTGTTTTTGCCTCTTCTTGCTTGCTAGTCATCTGTTTATTTTTCATAGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGGCAATGAAGCTGAAAAATCCATCCATTCT

Coding sequence (CDS)

ATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTGCCGGTGTAATGGCAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTTCTCGCTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTCCTGCTCCTCTCAGACCTTCCCTTCAACCTATTGCTCGTAGAATTTGTCCATTTACCGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCCTTCTCCAACCACAAGACCAAGAAATTGCAGTTCGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGA

Protein sequence

MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Homology
[Close]
BLAST of IVF0025212 vs. ExPASy Swiss-Prot
Match: P82245 (50S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 PE=1 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 97/124 (78.23%), Postives = 105/124 (84.68%), Query Frame = 0 

Query: 34  SDLGFLASQLSGIKISSNHSLISPSPISP-------APLRPSLQPIARRICPFTGKKANK 93
           S+LGFL SQLSGI+       ISPSP+ P       APL+PSLQP+ARRICPFTGKK+NK
Sbjct: 32  SELGFLTSQLSGIQ-------ISPSPLFPIISKPISAPLKPSLQPVARRICPFTGKKSNK 91

Query: 94  KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 151
            N VS SNHKTK+LQFVNLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID
Sbjct: 92  ANRVSHSNHKTKRLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGID 148

[Close]
BLAST of IVF0025212 vs. ExPASy Swiss-Prot
Match: P30956 (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-44
Identity = 90/122 (73.77%), Postives = 108/122 (88.52%), Query Frame = 0 

Query: 29  RTKPNSDLGFLASQLSGIKISSNHSLISPSPISPAPLRPSLQPIARRICPFTGKKANKKN 88
           ++K +S+L F+ SQLSG+KISS H + S +P+S  P +PSLQP+ARRICPFTGKK+N+ N
Sbjct: 31  QSKLSSELSFVTSQLSGLKISSTHFISSSAPLS-VPFKPSLQPVARRICPFTGKKSNRAN 90

Query: 89  LVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLR 148
            VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+KTIEKNGLDAVAKKAGIDL 
Sbjct: 91  KVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLS 150

Query: 149 KE 151
           K+
Sbjct: 151 KK 151

[Close]
BLAST of IVF0025212 vs. ExPASy Swiss-Prot
Match: O22795 (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL28 PE=2 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-40
Identity = 99/146 (67.81%), Postives = 111/146 (76.03%), Query Frame = 0 

Query: 10  TPAATSAGVMATSSTK-LHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI---SPAPL 69
           T A   A +  TSS K +   T  + +LGFL SQLSG++IS      +PS +      P 
Sbjct: 3   TMATQGAWLRMTSSAKSMTKSTVTSKELGFLTSQLSGLRIS-----YTPSDVINRISLPS 62

Query: 70  RPSLQPI-ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLS 129
            P +QPI ARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLS
Sbjct: 63  FPGIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLS 122

Query: 130 TKALKTIEKNGLDAVAKKAGIDLRKE 151
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 123 TKALKTIEKNGLDAVAKKAGIDLRKK 143

[Close]
BLAST of IVF0025212 vs. ExPASy Swiss-Prot
Match: Q8DG62 (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpmB PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 4.9e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 75  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           R+C  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ 
Sbjct: 3   RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GL A AK+AG+DL K
Sbjct: 63  GLSAFAKEAGLDLNK 77

[Close]
BLAST of IVF0025212 vs. ExPASy Swiss-Prot
Match: B8HUV7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmB PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-20
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 0 

Query: 75  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKN 134
           R+C  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  
Sbjct: 3   RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHK 62

Query: 135 GLDAVAKKAGIDLRK 150
           GLD+ A++AGIDL K
Sbjct: 63  GLDSFAREAGIDLNK 77

[Close]
BLAST of IVF0025212 vs. ExPASy TrEMBL
Match: A0A5A7U1W6 (50S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001850 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.1e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of IVF0025212 vs. ExPASy TrEMBL
Match: A0A1S3AWK5 (50S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.1e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of IVF0025212 vs. ExPASy TrEMBL
Match: A0A0A0L501 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.0e-69
Identity = 141/150 (94.00%), Postives = 145/150 (96.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of IVF0025212 vs. ExPASy TrEMBL
Match: A0A6J1IT28 (50S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479118 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.4e-64
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MA S V GFTP  +S+GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAVSAVLGFTP-VSSSGVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of IVF0025212 vs. ExPASy TrEMBL
Match: A0A6J1E916 (50S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431774 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 131/150 (87.33%), Postives = 139/150 (92.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MA S V GFTP   S+GVMA SS+KLHFR+K N +LGFL+SQLSGIKISSNHSLIS SPI
Sbjct: 1   MAVSAVLGFTPVC-SSGVMAASSSKLHFRSKANPELGFLSSQLSGIKISSNHSLISASPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 151
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of IVF0025212 vs. NCBI nr
Match: XP_008438484.1 (PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1 50S ribosomal protein L28 [Cucumis melo var. makuwa] >TYK17330.1 50S ribosomal protein L28 [Cucumis melo var. makuwa])

HSP 1 Score: 281 bits (720), Expect = 2.70e-95
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI
Sbjct: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of IVF0025212 vs. NCBI nr
Match: XP_004134049.1 (50S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypothetical protein Csa_010318 [Cucumis sativus])

HSP 1 Score: 266 bits (681), Expect = 2.39e-89
Identity = 141/150 (94.00%), Postives = 145/150 (96.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISP+ I
Sbjct: 1   MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPASI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  STAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150

[Close]
BLAST of IVF0025212 vs. NCBI nr
Match: XP_038885053.1 (50S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida])

HSP 1 Score: 249 bits (637), Expect = 1.14e-82
Identity = 136/150 (90.67%), Postives = 142/150 (94.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MAA VV GFTPA TS+GVMA SSTKL F TKPNS+LGFL SQL+GIKISSNHSLISPSPI
Sbjct: 1   MAAFVVLGFTPA-TSSGVMAASSTKLQFTTKPNSELGFLTSQLAGIKISSNHSLISPSPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of IVF0025212 vs. NCBI nr
Match: XP_022979375.1 (50S ribosomal protein L28, chloroplastic [Cucurbita maxima])

HSP 1 Score: 249 bits (636), Expect = 1.62e-82
Identity = 134/150 (89.33%), Postives = 142/150 (94.67%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MA S V GFTP ++S GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPI
Sbjct: 1   MAVSAVLGFTPVSSS-GVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISPSPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of IVF0025212 vs. NCBI nr
Match: XP_023526300.1 (50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244 bits (624), Expect = 1.09e-80
Identity = 132/150 (88.00%), Postives = 140/150 (93.33%), Query Frame = 0 

Query: 1   MAASVVFGFTPAATSAGVMATSSTKLHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI 60
           MA S V GFTP  +S GVMA SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLIS SPI
Sbjct: 1   MAVSAVLGFTPVCSS-GVMAASSSKLHFRTKPNPELGFLSSQLSGIKISSNHSLISSSPI 60

Query: 61  SPAPLRPSLQPIARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120
           S APLRP+LQP+ARR+CPFTGKKAN+KNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK
Sbjct: 61  S-APLRPALQPVARRVCPFTGKKANRKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVK 120

Query: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 150
           LRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Sbjct: 121 LRLSTKALKTIEKNGLDAVAKKAGIDLRKE 148

[Close]
BLAST of IVF0025212 vs. TAIR 10
Match: AT2G33450.1 (Ribosomal L28 family )

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-41
Identity = 99/146 (67.81%), Postives = 111/146 (76.03%), Query Frame = 0 

Query: 10  TPAATSAGVMATSSTK-LHFRTKPNSDLGFLASQLSGIKISSNHSLISPSPI---SPAPL 69
           T A   A +  TSS K +   T  + +LGFL SQLSG++IS      +PS +      P 
Sbjct: 3   TMATQGAWLRMTSSAKSMTKSTVTSKELGFLTSQLSGLRIS-----YTPSDVINRISLPS 62

Query: 70  RPSLQPI-ARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLS 129
            P +QPI ARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEAGKRFVKLRLS
Sbjct: 63  FPGIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLS 122

Query: 130 TKALKTIEKNGLDAVAKKAGIDLRKE 151
           TKALKTIEKNGLDAVAKKAGIDLRK+
Sbjct: 123 TKALKTIEKNGLDAVAKKAGIDLRKK 143

The following BLAST results are available for this feature:
BLAST of IVF0025212 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P822451.3e-4478.2350S ribosomal protein L28, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL28 P... [more]
P309561.3e-4473.7750S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL28 P... [more]
O227951.5e-4067.8150S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
Q8DG624.9e-2062.6750S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) OX=1972... [more]
B8HUV78.3e-2062.6750S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
BLAST of IVF0025212 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1W66.1e-74100.0050S ribosomal protein L28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AWK56.1e-74100.0050S ribosomal protein L28, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483567... [more]
A0A0A0L5012.0e-6994.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134810 PE=3 SV=1[more]
A0A6J1IT284.4e-6489.3350S ribosomal protein L28, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147... [more]
A0A6J1E9161.2e-6187.3350S ribosomal protein L28, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of IVF0025212 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438484.12.70e-95100.00PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo] >KAA0049228.1... [more]
XP_004134049.12.39e-8994.0050S ribosomal protein L28, chloroplastic [Cucumis sativus] >KGN56833.1 hypotheti... [more]
XP_038885053.11.14e-8290.6750S ribosomal protein L28, chloroplastic [Benincasa hispida] >XP_038885060.1 50S... [more]
XP_022979375.11.62e-8289.3350S ribosomal protein L28, chloroplastic [Cucurbita maxima][more]
XP_023526300.11.09e-8088.0050S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo][more]
BLAST of IVF0025212 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G33450.11.0e-4167.81Ribosomal L28 family [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001383Ribosomal protein L28TIGRFAMTIGR00009TIGR00009coord: 75..130
e-value: 2.1E-16
score: 58.2
IPR001383Ribosomal protein L28HAMAPMF_00373Ribosomal_L28coord: 72..148
score: 14.042251
IPR037147Ribosomal protein L28/L24 superfamilyGENE3D2.30.170.40Ribosomal protein L28/L24coord: 74..150
e-value: 2.5E-28
score: 99.9
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 75..133
e-value: 3.1E-18
score: 65.7
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 22..150
NoneNo IPR availablePANTHERPTHR13528:SF650S RIBOSOMAL PROTEIN L28, CHLOROPLASTICcoord: 22..150
IPR034704L28p-likeSUPERFAMILY143800L28p-likecoord: 75..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025212.1IVF0025212.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome