IVF0025188 (gene) Melon (IVF77) v1

Overview


Name	IVF0025188
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	photosynthetic NDH subunit of lumenal location 3, chloroplastic
Location	chr04: 9447252 .. 9448125 (-)
RNA-Seq Expression	IVF0025188
Synteny	IVF0025188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAAACTCAAAATTACTGGGTTTCTCAAGAAACAAACGGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCCGCTAACGAGTATTGGCTTGATGGCCCTTTGCCTGTCCCTTCTGTTGACAACAGTAAGCTTTCTCATTGAACAAGTTTGAAATGTTCGTTTGTGTTTTTGTTTTCCTTATCTGGGTGTACCTCCAAATTGGAAAATTCGAAATTGTTTGGTTAGTTTGACAGTAGAGACTAGAATTTGCTATGAATTATTTGTTACAGACATTGCGAATGAGCAAACAGGGACACGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGGTTGAAAAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCGGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAATTTCGAAAAGGTAAAATGCAGATAAGTTTTACAAGTTTCTTCAAATATATGCAAATTTTCAAGCTGAAGTACCTCCTTTTGTACTTTGCAGCTTGAAAATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTACCAACAAACAACACCGATACTTCAAGAAGTCATGGATAGAATGGCATAA

mRNA sequence

ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAAACTCAAAATTACTGGGTTTCTCAAGAAACAAACGGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCCGCTAACGAGTATTGGCTTGATGGCCCTTTGCCTGTCCCTTCTGTTGACAACAACATTGCGAATGAGCAAACAGGGACACGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGGTTGAAAAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCGGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAATTTCGAAAAGCTTGAAAATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTACCAACAAACAACACCGATACTTCAAGAAGTCATGGATAGAATGGCATAA

Coding sequence (CDS)

ATGGCTCGTCTTGCAAATTTAAACGGGAAATTCTCCGCCATTCCCAATCTCCCAAAGCTTCAAAACATTCATAAGAAACTCAAAATTACTGGGTTTCTCAAGAAACAAACGGATGTTTCTTCTCATCAAATCTCATTGACAAGAAGATTGGCTTTAACCAGCCTTGTCTCTGTTGCTCTCTTTGGCAATGCATCCCCCGAGATTGCTTCCGCTAACGAGTATTGGCTTGATGGCCCTTTGCCTGTCCCTTCTGTTGACAACAACATTGCGAATGAGCAAACAGGGACACGATCGTTTCTGAAGACAGGGATATACATAGCTAACATAGGAACAAAAGGAAGAAAATACAGGTTGAAAAAATATGCATTTGATCTTCTAGCTATGGCAGATTTGATTGGGAAAGATACTTTGAATTATGTCAGAAAGTATCTTCGACTCAAATCAACCTTCATGTACTATGATTTTGACAAAGTTATCTCGGCAGCAGCAGACGATGAGAAGCAGCCTCTTGTTGATTTAGCGAACAGATTATTTGACAATTTCGAAAAGCTTGAAAATGCAGCAAAGCAAAAGAATCTGAGTGAAACTGAATCCTACTACCAACAAACAACACCGATACTTCAAGAAGTCATGGATAGAATGGCATAA

Protein sequence

MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA

Homology

[Close]

BLAST of IVF0025188 vs. ExPASy Swiss-Prot
Match: Q9SGH4 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL3 PE=1 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.2e-65
Identity = 128/220 (58.18%), Postives = 163/220 (74.09%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTD--VSSHQISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL    K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRK 120
            L    G  +  +A  N +W+DGPLP+P + NNI NE+TGTR+F+K G+Y+A+IGTKGR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFD +ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLE+AAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of IVF0025188 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 64/223 (28.70%), Postives = 108/223 (48.43%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFL----KKQTDVSSHQISLTRRLALTSLV 60
           MA +  L+G   A+       N   +L  +G +    + +  V + Q   T R ++  LV
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASPEIASANEYWLD-GPLPVPSVDNNIANEQTG-TRSF---LKTGIYIANIGT 120
           +  L G +  +   A+   +  GP P PS       + +   R F   LK   Y+  +  
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPP 120

Query: 121 KGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLV 180
                R K+ A D++ +  LI +    YV+  LR K++++ YD + +IS+   DEK+ L 
Sbjct: 121 TEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLK 180

Query: 181 DLANRLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRM 215
           DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 DLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of IVF0025188 vs. ExPASy Swiss-Prot
Match: Q41932 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 0


Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNA--SPEIASANEYWLDGPLPVPSVDNNIA 92
           ++ Q +VS  + S   R ++  LV+  L G +      A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NEQTGTRSF---LKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLENAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

[Close]

BLAST of IVF0025188 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-11
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 0


Query: 47  TRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPS--VDNNIANEQT-GTRSFLK 106
           T R A+  LV+  + G A  +  +A A +    GP P PS  +   + ++Q   T   L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 107 TGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISA 166
              Y+  +       R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 167 AADDEKQPLVDLANRLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRM 215
              DEK+ L DL  +LF   + L++AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of IVF0025188 vs. ExPASy Swiss-Prot
Match: Q0D5P8 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-11
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 0


Query: 47  TRRLALTSLVSVALFGNASPE--IASANEYWLDGPLPVPS--VDNNIANEQT-GTRSFLK 106
           T R A+  LV+  + G A  +  +A A +    GP P PS  +   + ++Q   T   L+
Sbjct: 44  TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLR 103

Query: 107 TGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISA 166
              Y+  +       R K+ A D++ +  LI K    +VR  LRL+++++ YD   VI++
Sbjct: 104 ERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINS 163

Query: 167 AADDEKQPLVDLANRLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRM 215
              DEK+ L DL  +LF   + L++AAK K+  E E YY  T   L +V+ ++
Sbjct: 164 KPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of IVF0025188 vs. ExPASy TrEMBL
Match: A0A5A7TX10 (Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1251G00750 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of IVF0025188 vs. ExPASy TrEMBL
Match: A0A1S3BZP3 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494958 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of IVF0025188 vs. ExPASy TrEMBL
Match: A0A0A0L7N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 9.6e-113
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNI NEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of IVF0025188 vs. ExPASy TrEMBL
Match: A0A6J1CCI9 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010414 PE=3 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.6e-99
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP LPKLQN  K+LKI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120
           VALFGNAS EIASANEYWLDGPLPVPSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAAD EKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of IVF0025188 vs. ExPASy TrEMBL
Match: A0A6J1FHS2 (photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445892 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.6e-97
Identity = 188/218 (86.24%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP L KLQ   K+ KI G L+KQ +VSSH++SLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKIMGLLEKQAEVSSHEVSLTRRLALTSLTS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120
           VALFGNAS EIASANEYWLDGPLP+PSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           FDNFEKLE+AAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of IVF0025188 vs. NCBI nr
Match: XP_008454569.1 (PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis melo] >KAA0046447.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa] >TYJ97766.1 photosynthetic NDH subunit of lumenal location 3 [Cucumis melo var. makuwa])

HSP 1 Score: 421 bits (1083), Expect = 1.68e-148
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215
           FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of IVF0025188 vs. NCBI nr
Match: XP_004151964.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus] >KGN57960.1 hypothetical protein Csa_009832 [Cucumis sativus])

HSP 1 Score: 417 bits (1071), Expect = 1.13e-146
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLNGKFSAIPNLPKLQNIHK+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNGKFSAIPNLPKLQNIHKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNASPEIASANEYWLDGPLPVPSVDNNI NEQTGTRSFLKTGIYIANIGTKGRKYRLKK
Sbjct: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIVNEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180

Query: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215
           FEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 215

[Close]

BLAST of IVF0025188 vs. NCBI nr
Match: XP_038899633.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 384 bits (987), Expect = 7.23e-134
Identity = 196/215 (91.16%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60
           MARLANLN KF+AIPNLPKLQN  K+LKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL
Sbjct: 1   MARLANLNQKFTAIPNLPKLQNTRKRLKITGFLKKQTDVSSHQISLTRRLALTSLVSVAL 60

Query: 61  FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYRLKK 120
           FGNAS EIASANEYWLDGPLPVPSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYRLKK
Sbjct: 61  FGNASLEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYRLKK 120

Query: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRLFDN 180
           YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISA  +  KQPL+DLANRLFDN
Sbjct: 121 YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISATEEGAKQPLIDLANRLFDN 180

Query: 181 FEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215
           FEKLE+AAKQKNLSETE+YYQQTTP+LQEVMDRMA
Sbjct: 181 FEKLEDAAKQKNLSETEAYYQQTTPLLQEVMDRMA 215

[Close]

BLAST of IVF0025188 vs. NCBI nr
Match: XP_022139520.1 (photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica charantia])

HSP 1 Score: 373 bits (957), Expect = 3.00e-129
Identity = 194/218 (88.99%), Postives = 202/218 (92.66%), Query Frame = 0


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP LPKLQN  K+LKI GFL KQT+VSSH  S TRRLALTS+VS
Sbjct: 1   MARLANLNGVSDKFSAIPKLPKLQNPRKRLKIIGFLGKQTEVSSHHSSFTRRLALTSIVS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120
           VALFGNAS EIASANEYWLDGPLPVPSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNASVEIASANEYWLDGPLPVPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAAAD EKQPL +LANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAADGEKQPLTELANRL 180

Query: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215
           FDNFEKLE+AAKQKNLSETESYYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETESYYQQTTPILQEVMDRMA 218

[Close]

BLAST of IVF0025188 vs. NCBI nr
Match: KAG7015220.1 (Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (937), Expect = 3.35e-126
Identity = 189/218 (86.70%), Postives = 199/218 (91.28%), Query Frame = 0


Query: 1   MARLANLNG---KFSAIPNLPKLQNIHKKLKITGFLKKQTDVSSHQISLTRRLALTSLVS 60
           MARLANLNG   KFSAIP L KLQ   K+ KITG L+KQ +VSSH+ISLTRRLALTSL S
Sbjct: 1   MARLANLNGVSEKFSAIPKLSKLQKTRKRSKITGLLEKQVEVSSHEISLTRRLALTSLAS 60

Query: 61  VALFGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRKYR 120
           VALFGNA  EIASANEYWLDGPLP+PSV NNIANE+TGTRSFLKTGIYIANIGT+GRKYR
Sbjct: 61  VALFGNAPVEIASANEYWLDGPLPIPSVYNNIANEKTGTRSFLKTGIYIANIGTEGRKYR 120

Query: 121 LKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLANRL 180
           LK+YAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFD VISAA D EKQPL DLANRL
Sbjct: 121 LKRYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDNVISAAEDGEKQPLTDLANRL 180

Query: 181 FDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 215
           FDNFEKLE+AAKQKNLSETE+YYQQTTPILQEVMDRMA
Sbjct: 181 FDNFEKLEDAAKQKNLSETEAYYQQTTPILQEVMDRMA 218

[Close]

BLAST of IVF0025188 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 249.6 bits (636), Expect = 2.3e-66
Identity = 128/220 (58.18%), Postives = 163/220 (74.09%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFLKKQTD--VSSHQISLTRRLALTSLVSV 60
           MA   +LN   + +P+LPKL    K  K +GF  ++T+       + +TRR+ L   VS+
Sbjct: 1   MAHFIDLNSLTNTLPSLPKLPESRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSI 60

Query: 61  AL---FGNASPEIASANEYWLDGPLPVPSVDNNIANEQTGTRSFLKTGIYIANIGTKGRK 120
            L    G  +  +A  N +W+DGPLP+P + NNI NE+TGTR+F+K G+Y+A+IGTKGR 
Sbjct: 61  GLTGILGENNVSLAQDNGFWIDGPLPIPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRM 120

Query: 121 YRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVDLAN 180
           YR+KK AFDLLAM DLIG DTLNYV+KYLRLKSTF++YDFD +ISAAA ++KQPL DLAN
Sbjct: 121 YRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLAN 180

Query: 181 RLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRMA 216
           RLFDNFEKLE+AAK KNL+ETES Y+ T  +LQEVM RMA
Sbjct: 181 RLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRMA 220

[Close]

BLAST of IVF0025188 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-16
Identity = 64/222 (28.83%), Postives = 107/222 (48.20%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFL----KKQTDVSSHQISLTRRLALTSLV 60
           MA +  L+G   A+       N   +L  +G +    + +  V + Q   T R ++  LV
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASPEIASANEYWLD-GPLPVPSVDNNIANEQTGTRSF---LKTGIYIANIGTK 120
           +  L G +  +   A+   +  GP P PS      +     R F   LK   Y+  +   
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLPPT 120

Query: 121 GRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLVD 180
               R K+ A D++ +  LI +    YV+  LR K++++ YD + +IS+   DEK+ L D
Sbjct: 121 EAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKD 180

Query: 181 LANRLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRM 215
           L  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 LTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of IVF0025188 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-16
Identity = 64/223 (28.70%), Postives = 108/223 (48.43%), Query Frame = 0


Query: 1   MARLANLNGKFSAIPNLPKLQNIHKKLKITGFL----KKQTDVSSHQISLTRRLALTSLV 60
           MA +  L+G   A+       N   +L  +G +    + +  V + Q   T R ++  LV
Sbjct: 1   MASMGGLHGASPAVLEGSLKINGSSRLNGSGRVAVAQRSRLVVRAQQSEETSRRSVIGLV 60

Query: 61  SVALFGNASPEIASANEYWLD-GPLPVPSVDNNIANEQTG-TRSF---LKTGIYIANIGT 120
           +  L G +  +   A+   +  GP P PS       + +   R F   LK   Y+  +  
Sbjct: 61  AAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRFYLQPLPP 120

Query: 121 KGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLKSTFMYYDFDKVISAAADDEKQPLV 180
                R K+ A D++ +  LI +    YV+  LR K++++ YD + +IS+   DEK+ L 
Sbjct: 121 TEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLK 180

Query: 181 DLANRLFDNFEKLENAAKQKNLSETESYYQQTTPILQEVMDRM 215
           DL  +LFD  + L+ AAK+K+ S+ E YY +T   L EV+ ++
Sbjct: 181 DLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of IVF0025188 vs. TAIR 10
Match: AT4G05180.1 (photosystem II subunit Q-2 )

HSP 1 Score: 71.6 bits (174), Expect = 8.5e-13
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 0


Query: 33  LKKQTDVSSHQISLTRRLALTSLVSVALFGNA--SPEIASANEYWLDGPLPVPSVDNNIA 92
           ++ Q +VS  + S   R ++  LV+  L G +      A A    + GP P+PS      
Sbjct: 47  IRAQQNVSVPESS---RRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGP-PLPSGGLPGT 106

Query: 93  NEQTGTRSF---LKTGIYIANIGTKGRKYRLKKYAFDLLAMADLIGKDTLNYVRKYLRLK 152
           +     R F   LK   YI  +       R K  A +++ +   I K    YV+  LRL+
Sbjct: 107 DNSDQARDFSLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLR 166

Query: 153 STFMYYDFDKVISAAADDEKQPLVDLANRLFDNFEKLENAAKQKNLSETESYYQQTTPIL 212
           ++++ YD + VISA   +EKQ L DL  +LF   + L+ AA+ K+  + E YY +T   L
Sbjct: 167 ASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSL 226

Query: 213 QEVMDRM 215
             V+ ++
Sbjct: 227 NNVLAKL 229

The following BLAST results are available for this feature:

BLAST of IVF0025188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGH4	3.2e-65	58.18	Photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Arabidopsis t...	[more]
Q9XFT3	1.2e-14	28.70	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q41932	1.2e-11	29.95	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	2.0e-11	31.21	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]
Q0D5P8	2.0e-11	31.21	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonic...	[more]

BLAST of IVF0025188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TX10	3.9e-114	100.00	Photosynthetic NDH subunit of lumenal location 3 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BZP3	3.9e-114	100.00	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucumis melo ...	[more]
A0A0A0L7N1	9.6e-113	98.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G414060 PE=3 SV=1	[more]
A0A6J1CCI9	1.6e-99	88.99	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Momordica cha...	[more]
A0A6J1FHS2	5.6e-97	86.24	photosynthetic NDH subunit of lumenal location 3, chloroplastic OS=Cucurbita mos...	[more]

BLAST of IVF0025188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454569.1	1.68e-148	100.00	PREDICTED: photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucu...	[more]
XP_004151964.1	1.13e-146	98.60	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucumis sativus...	[more]
XP_038899633.1	7.23e-134	91.16	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Benincasa hispi...	[more]
XP_022139520.1	3.00e-129	88.99	photosynthetic NDH subunit of lumenal location 3, chloroplastic [Momordica chara...	[more]
KAG7015220.1	3.35e-126	86.70	Photosynthetic NDH subunit of lumenal location 3, chloroplastic [Cucurbita argyr...	[more]

BLAST of IVF0025188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01440.1	2.3e-66	58.18	PsbQ-like 1	[more]
AT4G21280.1	2.2e-16	28.83	photosystem II subunit QA	[more]
AT4G21280.2	8.2e-16	28.70	photosystem II subunit QA	[more]
AT4G05180.1	8.5e-13	29.95	photosystem II subunit Q-2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 36..215 e-value: 5.8E-56 score: 189.4
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 1..215
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 77..215 e-value: 1.9E-45 score: 156.5
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 105..215
None	No IPR available	PANTHER	PTHR33399:SF2	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025188.1	IVF0025188.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity