IVF0025170 (gene) Melon (IVF77) v1

Overview
NameIVF0025170
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr05: 5518095 .. 5518319 (-)
RNA-Seq ExpressionIVF0025170
SyntenyIVF0025170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA

mRNA sequence

ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA

Coding sequence (CDS)

ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA

Protein sequence

MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYNQEFNMSPEDIRAP
Homology
BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5A7VIP8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00210 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTM 60
           MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTM
Sbjct: 102 MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTM 160

BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A1S3BAQ2 (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK FPYYD+L+Y+F KDRA G  +ETF D+GSND S Y+ F P DG +M+IPT+Y+
Sbjct: 36  KALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYS 95

Query: 62  QEFNMSPEDIRAP 75
           Q FNMS ED+ AP
Sbjct: 96  QGFNMSQEDVWAP 108

BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5D3DB07 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001020 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK FPYYD+L+Y+F KDRA G  +ETF D+GSND S Y+ F P DG +M+IPT+Y+
Sbjct: 36  KALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYS 95

Query: 62  QEFNMSPEDIR 73
           Q FNMS ED++
Sbjct: 96  QGFNMSQEDLK 106

BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5D3BZU9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00980 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.3e-16
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK F YYDKL+Y+F +DRA    +ETF D+GSND SGYK F   D  +++IPT+YN
Sbjct: 94  KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 153

Query: 62  QEFNMSPEDIRA 74
           Q FNMS +D+RA
Sbjct: 154 QVFNMSQDDVRA 165

BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK F YYD+L+Y+FG+DR MG  +ETF+DVGSND S Y+ F   DG + + P+MY+
Sbjct: 93  KGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDKEFPSMYS 152

Query: 62  QEFNMSPEDIRA 74
           Q F+MS +D+RA
Sbjct: 153 QGFDMSQDDVRA 164

BLAST of IVF0025170 vs. NCBI nr
Match: KAA0065645.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01436.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (327), Expect = 4.04e-36
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTM 59
           MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTM
Sbjct: 102 MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTM 160

BLAST of IVF0025170 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 100 bits (248), Expect = 4.77e-25
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK FPYYD+L+Y+F KDRA G  +ETF D+GSND S Y+ F P DG +M+IPT+Y+
Sbjct: 36  KALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYS 95

Query: 62  QEFNMSPEDIRAP 74
           Q FNMS ED+ AP
Sbjct: 96  QGFNMSQEDVWAP 108

BLAST of IVF0025170 vs. NCBI nr
Match: KAA0054019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20705.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 2.06e-23
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NK FPYYD+L+Y+F KDRA G  +ETF D+GSND S Y+ F P DG +M+IPT+Y+
Sbjct: 36  KALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIPTIYS 95

Query: 62  QEFNMSPEDIRA 73
           Q FNMS ED++ 
Sbjct: 96  QGFNMSQEDLKT 107

BLAST of IVF0025170 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 2.72e-23
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NKPFPYYDK +Y+FGKDRAMG  +ETF DVGSN   G++ FPP D  +M+IP+M +
Sbjct: 119 KGLLNKPFPYYDKFAYVFGKDRAMGAHVETFADVGSNVPPGFEEFPPVDQNDMEIPSMSS 178

Query: 62  QEFNMSPEDIRAP 74
             FNMS +DI  P
Sbjct: 179 HRFNMSQDDITRP 191

BLAST of IVF0025170 vs. NCBI nr
Match: XP_031743896.1 (uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743898.1 uncharacterized protein LOC116404722 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 1.12e-21
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 2   KCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYN 61
           K L+NKPFPYYDKL+Y+FGKDRA G   ETF DVGSN   G++ FP  D  +M IP+M++
Sbjct: 159 KGLLNKPFPYYDKLAYIFGKDRATGAHAETFADVGSNVPPGFEEFPHVDLNDMKIPSMFS 218

Query: 62  QEFNMSPEDIRAP 74
             FNMS +DI  P
Sbjct: 219 HRFNMSQDDIARP 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIP82.1e-27100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BAQ22.3e-1861.64uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=... [more]
A0A5D3DB071.5e-1760.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BZU98.3e-1658.33Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DS681.9e-1555.56Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0065645.14.04e-36100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK01436.1 retrotransposon p... [more]
XP_008444620.14.77e-2561.64PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
KAA0054019.12.06e-2359.72retrotransposon protein [Cucumis melo var. makuwa] >TYK20705.1 retrotransposon p... [more]
XP_031742657.12.72e-2360.27uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact... [more]
XP_031743896.11.12e-2158.90uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharact... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025170.1IVF0025170.1mRNA