IVF0025170 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA ATGAAATGCCTCATGAACAAGCCTTTCCCCTATTACGACAAACTTTCGTATTTGTTCGGGAAAGATCGTGCAATGGGAGGACGTATGGAAACATTCGTCGATGTTGGGTCAAACGATGCTAGCGGGTACAAGAGATTTCCACCTAAAGATGGAATCAATATGGACATCCCTACTATGTACAACCAGGAATTTAACATGTCGCCTGAGGACATACGGGCCCCATGA MKCLMNKPFPYYDKLSYLFGKDRAMGGRMETFVDVGSNDASGYKRFPPKDGINMDIPTMYNQEFNMSPEDIRAP Homology
BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5A7VIP8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold772G00210 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A1S3BAQ2 (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18 Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0
BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5D3DB07 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001020 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17 Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 0
BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5D3BZU9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00980 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 8.3e-16 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of IVF0025170 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15 Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 0
BLAST of IVF0025170 vs. NCBI nr
Match: KAA0065645.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01436.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 130 bits (327), Expect = 4.04e-36 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0
BLAST of IVF0025170 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]) HSP 1 Score: 100 bits (248), Expect = 4.77e-25 Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0
BLAST of IVF0025170 vs. NCBI nr
Match: KAA0054019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20705.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 97.4 bits (241), Expect = 2.06e-23 Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 0
BLAST of IVF0025170 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus]) HSP 1 Score: 99.4 bits (246), Expect = 2.72e-23 Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 0
BLAST of IVF0025170 vs. NCBI nr
Match: XP_031743896.1 (uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743898.1 uncharacterized protein LOC116404722 [Cucumis sativus]) HSP 1 Score: 94.7 bits (234), Expect = 1.12e-21 Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|