IVF0025136 (gene) Melon (IVF77) v1

Overview
NameIVF0025136
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr02: 16637887 .. 16638298 (+)
RNA-Seq ExpressionIVF0025136
SyntenyIVF0025136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGGTTAGGCTCTAGCAGTTAGAAAATGAAGTGCTACATGCAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

mRNA sequence

ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

Coding sequence (CDS)

ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

Protein sequence

MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLGYDP
Homology
BLAST of IVF0025136 vs. ExPASy TrEMBL
Match: A0A5D3DYD1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001030 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0

Query: 1   MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
           MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKA
Sbjct: 95  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 154

Query: 61  ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
           ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 155 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 199

Query: 121 YDP 124
           YDP
Sbjct: 215 YDP 199

BLAST of IVF0025136 vs. ExPASy TrEMBL
Match: A0A5A7TWZ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00010 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0

Query: 1   MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
           MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKA
Sbjct: 103 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 162

Query: 61  ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
           ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 163 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 207

Query: 121 YDP 124
           YDP
Sbjct: 223 YDP 207

BLAST of IVF0025136 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 11  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAK 70
           S RMNM P+DMM  RS RS+D          + S++       IR+CMEA T+QLRTIA+
Sbjct: 65  SPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAE 124

Query: 71  WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 124
           WP+KA++ ED M AQVIE +++I +LTMAEKSKCV++V +KVSLMR+FIKM D MK AYC
Sbjct: 125 WPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYC 184

BLAST of IVF0025136 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.3e-25
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = 0

Query: 11  SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAK 70
           S RMNM PE+MM  RS RSND          + S++       I +CMEA T+QLRTIA+
Sbjct: 86  SPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAE 145

Query: 71  WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 121
           WPEK ++ EDAM AQVIE +++IP+LTMAEKSKCV++V +KVSLMR+FIKM D MK  Y 
Sbjct: 146 WPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYG 205

BLAST of IVF0025136 vs. ExPASy TrEMBL
Match: A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0

Query: 13  RMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTIAKWP 72
           RMNM P+DMMS RSS+S+D   +                  IR CME  T+QLRTI +WP
Sbjct: 96  RMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWP 155

Query: 73  EKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRV 118
           EKA++RED M  QVIE  +SIP+LT+AEKSKC++IV +KVSL R+FIKM D MK AYC+V
Sbjct: 156 EKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAYCKV 215

BLAST of IVF0025136 vs. NCBI nr
Match: TYK28753.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 2.12e-61
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0

Query: 1   MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
           MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKA
Sbjct: 95  MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 154

Query: 61  ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
           ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 155 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 199

Query: 121 YDP 123
           YDP
Sbjct: 215 YDP 199

BLAST of IVF0025136 vs. NCBI nr
Match: KAA0046506.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (499), Expect = 2.73e-61
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0

Query: 1   MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
           MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR                  RTIAKWPEKA
Sbjct: 103 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 162

Query: 61  ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
           ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 163 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 207

Query: 121 YDP 123
           YDP
Sbjct: 223 YDP 207

BLAST of IVF0025136 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 1.31e-36
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 11  SLRMNMLPEDMMSDRSSRSND----------RSSLRC-----TIRDCMEAMTNQLRTIAK 70
           S RMNM P+DMM  RS RS+D          + S++       IR+CMEA T+QLRTIA+
Sbjct: 65  SPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAE 124

Query: 71  WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 123
           WP+KA++ ED M AQVIE +++I +LTMAEKSKCV++V +KVSLMR+FIKM D MK AYC
Sbjct: 125 WPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYC 184

BLAST of IVF0025136 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 8.57e-34
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = 0

Query: 11  SLRMNMLPEDMMSDRSSRSND----------RSSLRC-----TIRDCMEAMTNQLRTIAK 70
           S RMNM PE+MM  RS RSND          + S++       I +CMEA T+QLRTIA+
Sbjct: 86  SPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAE 145

Query: 71  WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 120
           WPEK ++ EDAM AQVIE +++IP+LTMAEKSKCV++V +KVSLMR+FIKM D MK  Y 
Sbjct: 146 WPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYG 205

BLAST of IVF0025136 vs. NCBI nr
Match: TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 1.57e-32
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0

Query: 13  RMNMLPEDMMSDRSSRSNDRSSLRCT---------------IRDCMEAMTNQLRTIAKWP 72
           RMNM P+DMMS RSS+S+D   +                  IR CME  T+QLRTI +WP
Sbjct: 96  RMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWP 155

Query: 73  EKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRV 117
           EKA++RED M  QVIE  +SIP+LT+AEKSKC++IV +KVSL R+FIKM D MK AYC+V
Sbjct: 156 EKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAYCKV 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DYD12.0e-4685.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TWZ42.0e-4685.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TYU43.5e-2758.59Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3B9T03.3e-2557.60Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BUJ42.1e-2455.83Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK28753.12.12e-6185.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046506.12.73e-6185.37retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0048148.11.31e-3658.59retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... [more]
KAA0033551.18.57e-3457.60retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p... [more]
TYK02844.11.57e-3255.83retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0025136.1IVF0025136.1mRNA