Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGGTTAGGCTCTAGCAGTTAGAAAATGAAGTGCTACATGCAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA
mRNA sequence
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA
Coding sequence (CDS)
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA
Protein sequence
MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLGYDP
Homology
BLAST of IVF0025136 vs. ExPASy TrEMBL
Match:
A0A5D3DYD1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001030 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0
Query: 1 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR RTIAKWPEKA
Sbjct: 95 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 154
Query: 61 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 155 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 199
Query: 121 YDP 124
YDP
Sbjct: 215 YDP 199
BLAST of IVF0025136 vs. ExPASy TrEMBL
Match:
A0A5A7TWZ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00010 PE=4 SV=1)
HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0
Query: 1 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR RTIAKWPEKA
Sbjct: 103 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 162
Query: 61 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 163 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 207
Query: 121 YDP 124
YDP
Sbjct: 223 YDP 207
BLAST of IVF0025136 vs. ExPASy TrEMBL
Match:
A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 3.5e-27
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 0
Query: 11 SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAK 70
S RMNM P+DMM RS RS+D + S++ IR+CMEA T+QLRTIA+
Sbjct: 65 SPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAE 124
Query: 71 WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 124
WP+KA++ ED M AQVIE +++I +LTMAEKSKCV++V +KVSLMR+FIKM D MK AYC
Sbjct: 125 WPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYC 184
BLAST of IVF0025136 vs. ExPASy TrEMBL
Match:
A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)
HSP 1 Score: 124.4 bits (311), Expect = 3.3e-25
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = 0
Query: 11 SLRMNMLPEDMMSDRSSRSND----------RSSLR-----CTIRDCMEAMTNQLRTIAK 70
S RMNM PE+MM RS RSND + S++ I +CMEA T+QLRTIA+
Sbjct: 86 SPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAE 145
Query: 71 WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 121
WPEK ++ EDAM AQVIE +++IP+LTMAEKSKCV++V +KVSLMR+FIKM D MK Y
Sbjct: 146 WPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYG 205
BLAST of IVF0025136 vs. ExPASy TrEMBL
Match:
A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0
Query: 13 RMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTIAKWP 72
RMNM P+DMMS RSS+S+D + IR CME T+QLRTI +WP
Sbjct: 96 RMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWP 155
Query: 73 EKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRV 118
EKA++RED M QVIE +SIP+LT+AEKSKC++IV +KVSL R+FIKM D MK AYC+V
Sbjct: 156 EKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAYCKV 215
BLAST of IVF0025136 vs. NCBI nr
Match:
TYK28753.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 196 bits (499), Expect = 2.12e-61
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0
Query: 1 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR RTIAKWPEKA
Sbjct: 95 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 154
Query: 61 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 155 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 199
Query: 121 YDP 123
YDP
Sbjct: 215 YDP 199
BLAST of IVF0025136 vs. NCBI nr
Match:
KAA0046506.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 196 bits (499), Expect = 2.73e-61
Identity = 105/123 (85.37%), Postives = 105/123 (85.37%), Query Frame = 0
Query: 1 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKA 60
MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR RTIAKWPEKA
Sbjct: 103 MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDR------------------RTIAKWPEKA 162
Query: 61 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 120
ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG
Sbjct: 163 ITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLG 207
Query: 121 YDP 123
YDP
Sbjct: 223 YDP 207
BLAST of IVF0025136 vs. NCBI nr
Match:
KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 133 bits (335), Expect = 1.31e-36
Identity = 75/128 (58.59%), Postives = 94/128 (73.44%), Query Frame = 0
Query: 11 SLRMNMLPEDMMSDRSSRSND----------RSSLRC-----TIRDCMEAMTNQLRTIAK 70
S RMNM P+DMM RS RS+D + S++ IR+CMEA T+QLRTIA+
Sbjct: 65 SPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATDQLRTIAE 124
Query: 71 WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 123
WP+KA++ ED M AQVIE +++I +LTMAEKSKCV++V +KVSLMR+FIKM D MK AYC
Sbjct: 125 WPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPDLMKAAYC 184
BLAST of IVF0025136 vs. NCBI nr
Match:
KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 127 bits (318), Expect = 8.57e-34
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = 0
Query: 11 SLRMNMLPEDMMSDRSSRSND----------RSSLRC-----TIRDCMEAMTNQLRTIAK 70
S RMNM PE+MM RS RSND + S++ I +CMEA T+QLRTIA+
Sbjct: 86 SPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATDQLRTIAE 145
Query: 71 WPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYC 120
WPEK ++ EDAM AQVIE +++IP+LTMAEKSKCV++V +KVSLMR+FIKM D MK Y
Sbjct: 146 WPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPDSMKAIYG 205
BLAST of IVF0025136 vs. NCBI nr
Match:
TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 124 bits (310), Expect = 1.57e-32
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0
Query: 13 RMNMLPEDMMSDRSSRSNDRSSLRCT---------------IRDCMEAMTNQLRTIAKWP 72
RMNM P+DMMS RSS+S+D + IR CME T+QLRTI +WP
Sbjct: 96 RMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWP 155
Query: 73 EKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRV 117
EKA++RED M QVIE +SIP+LT+AEKSKC++IV +KVSL R+FIKM D MK AYC+V
Sbjct: 156 EKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAYCKV 215
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DYD1 | 2.0e-46 | 85.37 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TWZ4 | 2.0e-46 | 85.37 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7TYU4 | 3.5e-27 | 58.59 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3B9T0 | 3.3e-25 | 57.60 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BUJ4 | 2.1e-24 | 55.83 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
TYK28753.1 | 2.12e-61 | 85.37 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0046506.1 | 2.73e-61 | 85.37 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0048148.1 | 1.31e-36 | 58.59 | retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p... | [more] |
KAA0033551.1 | 8.57e-34 | 57.60 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p... | [more] |
TYK02844.1 | 1.57e-32 | 55.83 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |