IVF0025113 (gene) Melon (IVF77) v1

Overview


Name	IVF0025113
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr04: 8671216 .. 8671641 (+)
RNA-Seq Expression	IVF0025113
Synteny	IVF0025113

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAAGACACATCGGGGAAGGGTTTCCCGACGCACAAAAGACGTTGAGAAAAAAAACGTCGAAAGAGGCATTCTCAACGCCGCGTCATGCGTCGGCATAAGGTCTGTTGGGAGAGGAACTCCCGACGCCACTTTGGTCGACACATGTCATGGCGTCGGGAGAGGCATTCCCGACGCTGTACCAACATGGCATCAGGAATGCCTCTCCCAACTCATTTCTCCCGACGTTGTTCCCGACGCCGTGAAAAACGTCGGCATATCCTTTCCCGACGTTTTTTTCACTTTCCCCGACGTTTTTGTGCGTCAGGAGTACCCCGTCTCTTGTAGTGTATTACAAAGTGTGTCCGACTATACATTAAAGCCTAAAATATTTATGTTTTTCAAAAGTGTCCAACAAATGTCTTGGATGCAGAAACTTACATAA

mRNA sequence

ATGCATAAGACACATCGGGGAAGGGTTTCCCGACGCACAAAAGACGTTGAGAAAAAAAACGTCGAAAGAGGCATTCTCAACGCCGCGTCATGCGTCGGCATAAGGTCTGTTGGGAGAGGAACTCCCGACGCCACTTTGGTCGACACATGTCATGGCGTCGGGAGAGGCATTCCCGACGCTGTACCAACATGGCATCAGGAATGCCTCTCCCAACTCATTTCTCCCGACGTTGTTCCCGACGCCGTGAAAAACGTCGGCATATCCTTTCCCGACGTTTTTTTCACTTTCCCCGACGTTTTTGTGCGTCAGGAGTACCCCGTCTCTTGTAGTGTATTACAAAGTGTGTCCGACTATACATTAAAGCCTAAAATATTTATGTTTTTCAAAAGTGTCCAACAAATGTCTTGGATGCAGAAACTTACATAA

Coding sequence (CDS)

ATGCATAAGACACATCGGGGAAGGGTTTCCCGACGCACAAAAGACGTTGAGAAAAAAAACGTCGAAAGAGGCATTCTCAACGCCGCGTCATGCGTCGGCATAAGGTCTGTTGGGAGAGGAACTCCCGACGCCACTTTGGTCGACACATGTCATGGCGTCGGGAGAGGCATTCCCGACGCTGTACCAACATGGCATCAGGAATGCCTCTCCCAACTCATTTCTCCCGACGTTGTTCCCGACGCCGTGAAAAACGTCGGCATATCCTTTCCCGACGTTTTTTTCACTTTCCCCGACGTTTTTGTGCGTCAGGAGTACCCCGTCTCTTGTAGTGTATTACAAAGTGTGTCCGACTATACATTAAAGCCTAAAATATTTATGTTTTTCAAAAGTGTCCAACAAATGTCTTGGATGCAGAAACTTACATAA

Protein sequence

MHKTHRGRVSRRTKDVEKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQLISPDVVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCSVLQSVSDYTLKPKIFMFFKSVQQMSWMQKLT

Homology

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BLAST of IVF0025113 vs. ExPASy TrEMBL
Match: A0A5D3BQN2 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G001040 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 17  EKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQLISPD 76
           + K +  GI +A + VGIR VG G  D     +   VGRGIP+A+   H   +SQ +S D
Sbjct: 80  DTKTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFD 139

Query: 77  VVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCSVLQS 115
           V  DAVK+VG  +PDVF  F DVFVR+E P+SCSV ++
Sbjct: 140 VCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCSVTRT 177

[Close]

BLAST of IVF0025113 vs. ExPASy TrEMBL
Match: A0A5A7T5M8 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4533G00110 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 17  EKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQLISPD 76
           + K +  GI +A + VGIR VG G  +     +   VGRGIP+A+   H   +SQ +S D
Sbjct: 80  DTKTLGEGIPDAIASVGIRDVGEGITETMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFD 139

Query: 77  VVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCSVLQS 115
           V  DAVK+VG  +PDVF    DVFVR+E P+SCSV ++
Sbjct: 140 VYLDAVKDVGKRYPDVFLGSFDVFVRRESPLSCSVTRT 177

[Close]

BLAST of IVF0025113 vs. ExPASy TrEMBL
Match: A0A5A7UPN4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00290 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.1e-12
Identity = 45/81 (55.56%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 17  EKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQLISPD 76
           + K   RG+ +    V    VGRG  D         V RGIPDAV   HQECLS+L SPD
Sbjct: 482 KSKAFRRGLPDVGDFVSKNGVGRGILD---------VERGIPDAVLVTHQECLSRLTSPD 541

Query: 77  VVPDAVKNVGISFPDVFFTFP 98
           V PDA KNVGISFPDVFF FP
Sbjct: 542 VRPDAPKNVGISFPDVFFYFP 553

[Close]

BLAST of IVF0025113 vs. ExPASy TrEMBL
Match: A0A5D3BBD4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00140 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 9   VSRRTKDVEKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQEC 68
           VS+  +D  KK+V RG+ +    VG   V RG PD     + + VGR I DAV   HQE 
Sbjct: 611 VSQAIEDTIKKDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEY 670

Query: 69  LSQLISPDVVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCS 111
           L +L S DV PDA +N GISF DVF  F         P SCS
Sbjct: 671 LFRLTSRDVRPDAAENFGISFSDVFSLFLTFLCVGSTPFSCS 712

[Close]

BLAST of IVF0025113 vs. ExPASy TrEMBL
Match: A0A5A7VPX1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00930 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-10
Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 9   VSRRTKDVEKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQEC 68
           VS+  +D  KK+V RG+ +    VG   V RG PD     + + VGR I DAV   HQE 
Sbjct: 576 VSQAIEDTIKKDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEY 635

Query: 69  LSQLISPDVVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCS 111
           L +L S DV PDA +N GISF DVF  F         P SCS
Sbjct: 636 LFRLTSRDVRPDAAENFGISFSDVFSLFLTFLCVGSTPFSCS 677

[Close]

BLAST of IVF0025113 vs. NCBI nr
Match: TYK01082.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.10e-17
Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 17  EKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQLISPD 76
           + K +  GI +A + VGIR VG G  D     +   VGRGIP+A+   H   +SQ +S D
Sbjct: 80  DTKTLGEGIPDAIASVGIRDVGEGITDTMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFD 139

Query: 77  VVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCSVLQS 114
           V  DAVK+VG  +PDVF  F DVFVR+E P+SCSV ++
Sbjct: 140 VCLDAVKDVGKRYPDVFLGFFDVFVRRESPLSCSVTRT 177

[Close]

BLAST of IVF0025113 vs. NCBI nr
Match: KAA0036659.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 6.62e-16
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 17  EKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQLISPD 76
           + K +  GI +A + VGIR VG G  +     +   VGRGIP+A+   H   +SQ +S D
Sbjct: 80  DTKTLGEGIPDAIASVGIRDVGEGITETMKSVSIRDVGRGIPNAMLVMHGGFISQRVSFD 139

Query: 77  VVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCSVLQS 114
           V  DAVK+VG  +PDVF    DVFVR+E P+SCSV ++
Sbjct: 140 VYLDAVKDVGKRYPDVFLGSFDVFVRRESPLSCSVTRT 177

[Close]

BLAST of IVF0025113 vs. NCBI nr
Match: KAA0056276.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 3.52e-14
Identity = 45/81 (55.56%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 17  EKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQLISPD 76
           + K   RG+ +    V    VGRG  D         V RGIPDAV   HQECLS+L SPD
Sbjct: 482 KSKAFRRGLPDVGDFVSKNGVGRGILD---------VERGIPDAVLVTHQECLSRLTSPD 541

Query: 77  VVPDAVKNVGISFPDVFFTFP 97
           V PDA KNVGISFPDVFF FP
Sbjct: 542 VRPDAPKNVGISFPDVFFYFP 553

[Close]

BLAST of IVF0025113 vs. NCBI nr
Match: TYK14413.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 5.46e-13
Identity = 48/94 (51.06%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 15  DVEKKNVE--RGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQECLSQL 74
           DV ++ +E  +G L  AS  GIR   R   DA+      GVG+G PDA     +E LS+ 
Sbjct: 101 DVGREYIEVVKGDLQTAS--GIRFSRRRHADASP-----GVGKGFPDADLVRRRESLSRR 160

Query: 75  ISPDVVPDAVKNVGISFPDVFFTFPDVFVRQEYP 106
           ISPDV+PD V  VGISFPDV   F DVFVR+EYP
Sbjct: 161 ISPDVLPDVVLFVGISFPDVLCIFADVFVRREYP 187

[Close]

BLAST of IVF0025113 vs. NCBI nr
Match: KAA0067621.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 5.16e-12
Identity = 46/102 (45.10%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 9   VSRRTKDVEKKNVERGILNAASCVGIRSVGRGTPDATLVDTCHGVGRGIPDAVPTWHQEC 68
           VS+  +D  KK+V RG+ +    VG   V RG PD     + + VGR I DAV   HQE 
Sbjct: 576 VSQAIEDTIKKDVARGLPDVGDFVGKNDVERGIPDVVEFVSKNDVGRRILDAVLVTHQEY 635

Query: 69  LSQLISPDVVPDAVKNVGISFPDVFFTFPDVFVRQEYPVSCS 110
           L +L S DV PDA +N GISF DVF  F         P SCS
Sbjct: 636 LFRLTSRDVRPDAAENFGISFSDVFSLFLTFLCVGSTPFSCS 677

The following BLAST results are available for this feature:

BLAST of IVF0025113 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025113 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQN2	1.5e-13	47.96	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7T5M8	3.7e-12	45.92	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7UPN4	8.1e-12	55.56	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BBD4	3.4e-10	45.10	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7VPX1	3.4e-10	45.10	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of IVF0025113 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01082.1	1.10e-17	47.96	zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa]	[more]
KAA0036659.1	6.62e-16	45.92	zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa]	[more]
KAA0056276.1	3.52e-14	55.56	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK05223.1 CACTA en-...	[more]
TYK14413.1	5.46e-13	51.06	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0067621.1	5.16e-12	45.10	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0025113 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025113.1	IVF0025113.1	mRNA