IVF0025089 (gene) Melon (IVF77) v1

Overview


Name	IVF0025089
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr07: 18310018 .. 18310365 (+)
RNA-Seq Expression	IVF0025089
Synteny	IVF0025089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGTCAGTATTTGGAACGACATATTATGATTCAGAAGTCGGTCAATCGTCAGACTTTAGAACAAGATATTATAATTCAGAGGCAGGTCCATCATCATCAAACTTTGAGCAACAATACTATGATTTAGAGAGCGATCCATCGTCTTCATACCTGCATGGTCACGAGCATGGTCATGGAGAACATATTGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATCAGGAGGAAATACAGAAACAAAGAGTTCAGAGTCGACGACGACAACCAGCTAGAAATCATCGACGTCCAGGTTGTGGAACACATTGA

mRNA sequence

ATGATGATGTCAGTATTTGGAACGACATATTATGATTCAGAAGTCGGTCAATCGTCAGACTTTAGAACAAGATATTATAATTCAGAGGCAGGTCCATCATCATCAAACTTTGAGCAACAATACTATGATTTAGAGAGCGATCCATCGTCTTCATACCTGCATGGTCACGAGCATGGTCATGGAGAACATATTGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATCAGGAGGAAATACAGAAACAAAGAGTTCAGAGTCGACGACGACAACCAGCTAGAAATCATCGACGTCCAGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGATGATGTCAGTATTTGGAACGACATATTATGATTCAGAAGTCGGTCAATCGTCAGACTTTAGAACAAGATATTATAATTCAGAGGCAGGTCCATCATCATCAAACTTTGAGCAACAATACTATGATTTAGAGAGCGATCCATCGTCTTCATACCTGCATGGTCACGAGCATGGTCATGGAGAACATATTGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATCAGGAGGAAATACAGAAACAAAGAGTTCAGAGTCGACGACGACAACCAGCTAGAAATCATCGACGTCCAGGTTGTGGAACACATTGA

Protein sequence

MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGHGEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH

Homology

[Close]

BLAST of IVF0025089 vs. ExPASy TrEMBL
Match: A0A5D3CWX5 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001770 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH
Sbjct: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60

Query: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 116
           GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH
Sbjct: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 115

[Close]

BLAST of IVF0025089 vs. ExPASy TrEMBL
Match: A0A5A7VBH9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00540 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMMS FGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSY+HGHEHG 
Sbjct: 1   MMMSAFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYMHGHEHGR 60

Query: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 116
           GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH
Sbjct: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 115

[Close]

BLAST of IVF0025089 vs. ExPASy TrEMBL
Match: A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.6e-40
Identity = 98/130 (75.38%), Postives = 102/130 (78.46%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMM  FGTTYYDSEVGQSSDF   YYNSEAG SS++F QQYYDL SDPSSSY+HGH  G 
Sbjct: 498 MMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGR 557

Query: 61  GEHIEYLYYEVPAAVPE---------------QSDEQQQQENQEEIQKQRVQSRRRQPAR 116
           GEH EYLYYEVPAAVPE               QSDEQQQQENQEEIQ+QRVQSRRRQPAR
Sbjct: 558 GEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPAR 617

[Close]

BLAST of IVF0025089 vs. ExPASy TrEMBL
Match: A0A5D3BSU2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00180 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39
Identity = 97/130 (74.62%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMM  FGTTYYDS VGQSSDF   YYNSEAG SS++F QQYYDL SDPSSSY+HGH  G 
Sbjct: 1   MMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGR 60

Query: 61  GEHIEYLYYEVPAAVPE---------------QSDEQQQQENQEEIQKQRVQSRRRQPAR 116
           GEH EYLYYEVPAAVPE               QSDEQQQQENQEEIQ+QRVQSRRRQPAR
Sbjct: 61  GEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPAR 120

[Close]

BLAST of IVF0025089 vs. ExPASy TrEMBL
Match: A0A5A7SU33 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00810 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.7e-39
Identity = 97/130 (74.62%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMM  FGTTYYDS VGQSSDF   YYNSEAG SS++F QQYYDL SDPSSSY+HGH  G 
Sbjct: 647 MMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGR 706

Query: 61  GEHIEYLYYEVPAAVPE---------------QSDEQQQQENQEEIQKQRVQSRRRQPAR 116
           GEH EYLYYEVPAAVPE               QSDEQQQQENQEEIQ+QRVQSRRRQPAR
Sbjct: 707 GEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPAR 766

[Close]

BLAST of IVF0025089 vs. NCBI nr
Match: TYK16383.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (564), Expect = 1.24e-72
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH
Sbjct: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60

Query: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 115
           GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH
Sbjct: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 115

[Close]

BLAST of IVF0025089 vs. NCBI nr
Match: KAA0062959.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (550), Expect = 1.69e-70
Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMMS FGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSY+HGHEHG 
Sbjct: 1   MMMSAFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYMHGHEHGR 60

Query: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 115
           GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH
Sbjct: 61  GEHIEYLYYEVPAAVPEQSDEQQQQENQEEIQKQRVQSRRRQPARNHRRPGCGTH 115

[Close]

BLAST of IVF0025089 vs. NCBI nr
Match: TYK02811.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 1.09e-51
Identity = 97/130 (74.62%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMM  FGTTYYDS VGQSSDF   YYNSEAG SS++F QQYYDL SDPSSSY+HGH  G 
Sbjct: 1   MMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGR 60

Query: 61  GEHIEYLYYEVPAAVPEQS---------------DEQQQQENQEEIQKQRVQSRRRQPAR 115
           GEH EYLYYEVPAAVPEQS               DEQQQQENQEEIQ+QRVQSRRRQPAR
Sbjct: 61  GEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPAR 120

[Close]

BLAST of IVF0025089 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 3.53e-49
Identity = 97/130 (74.62%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMM  FGTTYYDS VGQSSDF   YYNSEAG SS++F QQYYDL SDPSSSY+HGH  G 
Sbjct: 199 MMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGR 258

Query: 61  GEHIEYLYYEVPAAVPEQS---------------DEQQQQENQEEIQKQRVQSRRRQPAR 115
           GEH EYLYYEVPAAVPEQS               DEQQQQENQEEIQ+QRVQSRRRQPAR
Sbjct: 259 GEHNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPAR 318

[Close]

BLAST of IVF0025089 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (421), Expect = 3.96e-48
Identity = 96/130 (73.85%), Postives = 100/130 (76.92%), Query Frame = 0


Query: 1   MMMSVFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDLESDPSSSYLHGHEHGH 60
           MMM  FGTTYYDS VGQSSDF   YYNSEAG SS++F QQYYDL SDPSSSY+H H  G 
Sbjct: 199 MMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGR 258

Query: 61  GEHIEYLYYEVPAAVP---------------EQSDEQQQQENQEEIQKQRVQSRRRQPAR 115
           GEH EYLYYEVPAAVP               EQSDEQQQQENQEEIQ+QRVQSRRRQPAR
Sbjct: 259 GEHNEYLYYEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQQQRVQSRRRQPAR 318

The following BLAST results are available for this feature:

BLAST of IVF0025089 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWX5	2.8e-55	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7VBH9	1.2e-53	97.39	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7VIP6	2.6e-40	75.38	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSU2	1.7e-39	74.62	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7SU33	1.7e-39	74.62	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of IVF0025089 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16383.1	1.24e-72	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062959.1	1.69e-70	97.39	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK02811.1	1.09e-51	74.62	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK18891.1	3.53e-49	74.62	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0051233.1	3.96e-48	73.85	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of IVF0025089 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025089.2	IVF0025089.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048507	meristem development
molecular_function	GO:0046983	protein dimerization activity