IVF0025017 (gene) Melon (IVF77) v1

Overview


Name	IVF0025017
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Integrase catalytic domain-containing protein
Location	chr05: 17694707 .. 17694916 (-)
RNA-Seq Expression	IVF0025017
Synteny	IVF0025017

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGGATTTGATTTTTGTGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAGGGTGA

mRNA sequence

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGGATTTGATTTTTGTGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAGGGTGA

Coding sequence (CDS)

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGGATTTGATTTTTGTGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAGGGTGA

Protein sequence

MGKTKSWKATSLREKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDEEDLIFVNKEDKQKVRARDLG

Homology

[Close]

BLAST of IVF0025017 vs. ExPASy TrEMBL
Match: A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 8  KATSLREKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDEEDLIFVNKEDKQK 63
          KA S+REKAQQKHDR FDF EQGGRREGSCERFRVMANKEDEE      KED+ +
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEE------KEDEDE 51

[Close]

BLAST of IVF0025017 vs. NCBI nr
Match: KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 7.57e-15
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 8  KATSLREKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDEE 50
          KA S+REKAQQKHDR FDF EQGGRREGSCERFRVMANKEDEE
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEE 45

The following BLAST results are available for this feature:

BLAST of IVF0025017 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0025017 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C784	2.0e-11	76.36	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0025017 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050651.1	7.57e-15	90.70	uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of IVF0025017 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0025017.1	IVF0025017.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding