IVF0024985 (gene) Melon (IVF77) v1

Overview


Name	IVF0024985
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	microtubule-associated protein RP/EB family member 1-like
Location	tig00195367: 339829 .. 341004 (+)
RNA-Seq Expression	IVF0024985
Synteny	IVF0024985

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATTATTATCATCATTATTATTTTAAATTGGAATAAACTTACCTTTTTTTTTAGAACTATTTTTTTATTAATTAATTATGTCAAATCTTCCTCGTTTCGGCCGTACATGGAACCGCTTCTCTTCTTTGCCCCGTCCCAGTACCGCCGCCCGCCAAGAAACTCAACCGGCCTTCACGGCGGCCACGGAGCCGGAAGTTTTTCCCTCGGCTGTACCAACCACTAATACTCTTCAAACTTCTCCCGTAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTCCCTCGCCGCCGTCTTCTCCAAAATATAGCGGCGCCACCGGCACCATTTCGCCTCGTAAACCACTATCTCCACCTTCGACGTACAACCGTCACGATGGTGAACGCCGGACTAGTGCCACAACATCTCCCAAAACCTTCAAACCCACCTATATCTCTCCCCCACCGTCTCCGCCCAAGCCTAAACATTCTACCGCTGCCACCGTTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGGAGGTGAGACGTGAACCTGAACGCTCCATTCGACCTCGGAGCCCGCCGGAGGTTAGTTAAATTAATTACCGTAAAAATTTAGCTCACTCAATGGTCTCTCTTATACGATTATTTCATCGTAACCCATATTATAATAGATGCAACACAACCATCGATGTTTAGAGTGATAACTAATGACTTTATTTACATCCACGCTAAGCAGATCGAACAAAAAAAGATCCTTTACCAGACGACAACAACCGAGAAGCCAACGAAAACCGACTACCGGCAAACAGATCAGTATGGGACGAGTAAACCCCAGCAGAAGCAGCACCATCAGCAGCTGCAAAGTGACGTTATAAACATAAAAGGGGACAACGTAGGGGCAGTGATGCACATCACGCAATCATCTGATGGCTCGGAAATACTAAAGAAAAAGCCAAGCGTTGGACAGAGCAAGGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTTTCCAGGAAAGTCGTTTATGAACAGCAATTTTCAAGGAGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGCGATCCAGGCCTCCATCTTGCTTACAGCTCCAAGAACCCTAAACATGGCGATTCAATTCATGAGTCAAGGCACTAAAGTATATATGGACCGA

mRNA sequence

CTTATTATTATCATCATTATTATTTTAAATTGGAATAAACTTACCTTTTTTTTTAGAACTATTTTTTTATTAATTAATTATGTCAAATCTTCCTCGTTTCGGCCGTACATGGAACCGCTTCTCTTCTTTGCCCCGTCCCAGTACCGCCGCCCGCCAAGAAACTCAACCGGCCTTCACGGCGGCCACGGAGCCGGAAGTTTTTCCCTCGGCTGTACCAACCACTAATACTCTTCAAACTTCTCCCGTAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTCCCTCGCCGCCGTCTTCTCCAAAATATAGCGGCGCCACCGGCACCATTTCGCCTCGTAAACCACTATCTCCACCTTCGACGTACAACCGTCACGATGGTGAACGCCGGACTAGTGCCACAACATCTCCCAAAACCTTCAAACCCACCTATATCTCTCCCCCACCGTCTCCGCCCAAGCCTAAACATTCTACCGCTGCCACCGTTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGGAGGTGAGACGTGAACCTGAACGCTCCATTCGACCTCGGAGCCCGCCGGAGATCGAACAAAAAAAGATCCTTTACCAGACGACAACAACCGAGAAGCCAACGAAAACCGACTACCGGCAAACAGATCAGTATGGGACGAGTAAACCCCAGCAGAAGCAGCACCATCAGCAGCTGCAAAGTGACGTTATAAACATAAAAGGGGACAACGTAGGGGCAGTGATGCACATCACGCAATCATCTGATGGCTCGGAAATACTAAAGAAAAAGCCAAGCGTTGGACAGAGCAAGGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTTTCCAGGAAAGTCGTTTATGAACAGCAATTTTCAAGGAGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGCGATCCAGGCCTCCATCTTGCTTACAGCTCCAAGAACCCTAAACATGGCGATTCAATTCATGAGTCAAGGCACTAAAGTATATATGGACCGA

Coding sequence (CDS)

ATGTCAAATCTTCCTCGTTTCGGCCGTACATGGAACCGCTTCTCTTCTTTGCCCCGTCCCAGTACCGCCGCCCGCCAAGAAACTCAACCGGCCTTCACGGCGGCCACGGAGCCGGAAGTTTTTCCCTCGGCTGTACCAACCACTAATACTCTTCAAACTTCTCCCGTAAAACAAAGAACCCCTCGTCTTTCATCTCCGGTTAAAAAATTTCCCTCGCCGCCGTCTTCTCCAAAATATAGCGGCGCCACCGGCACCATTTCGCCTCGTAAACCACTATCTCCACCTTCGACGTACAACCGTCACGATGGTGAACGCCGGACTAGTGCCACAACATCTCCCAAAACCTTCAAACCCACCTATATCTCTCCCCCACCGTCTCCGCCCAAGCCTAAACATTCTACCGCTGCCACCGTTGTTGCACCACTCTCTCCTCTGGCTCTGCCGCGATCGGAGGTGAGACGTGAACCTGAACGCTCCATTCGACCTCGGAGCCCGCCGGAGATCGAACAAAAAAAGATCCTTTACCAGACGACAACAACCGAGAAGCCAACGAAAACCGACTACCGGCAAACAGATCAGTATGGGACGAGTAAACCCCAGCAGAAGCAGCACCATCAGCAGCTGCAAAGTGACGTTATAAACATAAAAGGGGACAACGTAGGGGCAGTGATGCACATCACGCAATCATCTGATGGCTCGGAAATACTAAAGAAAAAGCCAAGCGTTGGACAGAGCAAGGAAAATGAAGAGAAAACAAACAAATCAAATTCAAATTTTCCAGGAAAGTCGTTTATGAACAGCAATTTTCAAGGAGTTAACAATTCTATTCTTTACAATTCTTCTTTAAGCCACCGCGATCCAGGCCTCCATCTTGCTTACAGCTCCAAGAACCCTAAACATGGCGATTCAATTCATGAGTCAAGGCACTAA

Protein sequence

MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRTPRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTYISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTTEKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKPSVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKHGDSIHESRH

Homology

[Close]

BLAST of IVF0024985 vs. ExPASy TrEMBL
Match: A0A5A7TZ60 (Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00750 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 2.0e-164
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
           ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
           EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240

Query: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
           SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300

Query: 301 GDSIHESRH 310
           GDSIHESRH
Sbjct: 301 GDSIHESRH 309

[Close]

BLAST of IVF0024985 vs. ExPASy TrEMBL
Match: A0A1S3AVJ6 (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 2.0e-164
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
           ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
           EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240

Query: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
           SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300

Query: 301 GDSIHESRH 310
           GDSIHESRH
Sbjct: 301 GDSIHESRH 309

[Close]

BLAST of IVF0024985 vs. ExPASy TrEMBL
Match: A0A0A0L5T3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 2.0e-140
Identity = 270/310 (87.10%), Postives = 287/310 (92.58%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           MSNLPRFGR WNRFSSLPRP TA R E QP FTAATEPEVFPSAVPTTNT QTSP+KQRT
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQP-FTAATEPEVFPSAVPTTNTFQTSPIKQRT 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PRLSSPVKKF SPPSSPKYSGA GT+SPRKPLSPP  +NR++GERRTSATTSPKTFKPT+
Sbjct: 61  PRLSSPVKKFSSPPSSPKYSGA-GTVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTH 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
           ISPPPSP KP+HST  T VAPLSPLALPRS+VRREPE S+RPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTD-YRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKK 240
           EKPTKTD YRQ D+YG SKPQQKQ HQQLQSDVINIKG+NVGAVMHITQSSDGSE++KKK
Sbjct: 181 EKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKK 240

Query: 241 PSVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPK 300
           P+VGQSKENEEKTNKSNSN+PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA+ SK  K
Sbjct: 241 PTVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSK 300

Query: 301 HGDSIHESRH 310
           HGDSIH+SRH
Sbjct: 301 HGDSIHDSRH 308

[Close]

BLAST of IVF0024985 vs. ExPASy TrEMBL
Match: A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 5.1e-107
Identity = 219/309 (70.87%), Postives = 254/309 (82.20%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           M+NLPRFGRTWNRFSSLPRP+TA R +  P   A +EPEVF SA PT N LQTSP+K+R+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPP-AATSEPEVFSSAPPTANVLQTSPIKERS 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTY 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPE++QK +LYQ TT+
Sbjct: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTS 180

Query: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
           EKP KTD+R   +Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP
Sbjct: 181 EKPAKTDHR-ASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
           +V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA+ +K P H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300

Query: 301 GDSIHESRH 310
            DS+H+SRH
Sbjct: 301 ADSVHDSRH 304

[Close]

BLAST of IVF0024985 vs. ExPASy TrEMBL
Match: A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.9e-106
Identity = 218/309 (70.55%), Postives = 253/309 (81.88%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           M+NLPRFGRTWNRFSSLPRP TA R +  P   A +EPEV+PSA  T N LQTSP+K+R+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPP-AATSEPEVYPSAPRTANVLQTSPIKERS 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTY 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPE++QK +LYQ TT+
Sbjct: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPVVRPRSPPEVQQKSVLYQKTTS 180

Query: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
           EKP KTD+R   +Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP
Sbjct: 181 EKPAKTDHR-ASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
           +V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA+ +K P H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAF-TKKPTH 300

Query: 301 GDSIHESRH 310
            DS+H+SRH
Sbjct: 301 ADSVHDSRH 304

[Close]

BLAST of IVF0024985 vs. NCBI nr
Match: XP_008437849.1 (PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis melo] >KAA0048862.1 microtubule-associated protein RP/EB family member 1-like [Cucumis melo var. makuwa] >TYK20814.1 microtubule-associated protein RP/EB family member 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 588 bits (1516), Expect = 2.32e-211
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
           ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
           EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP
Sbjct: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240

Query: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
           SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH
Sbjct: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300

Query: 301 GDSIHESRH 309
           GDSIHESRH
Sbjct: 301 GDSIHESRH 309

[Close]

BLAST of IVF0024985 vs. NCBI nr
Match: XP_004133796.1 (extensin [Cucumis sativus] >KGN56394.1 hypothetical protein Csa_010862 [Cucumis sativus])

HSP 1 Score: 508 bits (1308), Expect = 1.10e-179
Identity = 270/310 (87.10%), Postives = 287/310 (92.58%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           MSNLPRFGR WNRFSSLPRP TA R E QP FTAATEPEVFPSAVPTTNT QTSP+KQRT
Sbjct: 1   MSNLPRFGRQWNRFSSLPRPGTATRPEPQP-FTAATEPEVFPSAVPTTNTFQTSPIKQRT 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PRLSSPVKKF SPPSSPKYSGA GT+SPRKPLSPP  +NR++GERRTSATTSPKTFKPT+
Sbjct: 61  PRLSSPVKKFSSPPSSPKYSGA-GTVSPRKPLSPPPVHNRYEGERRTSATTSPKTFKPTH 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
           ISPPPSP KP+HST  T VAPLSPLALPRS+VRREPE S+RPRSPPEIEQKKILYQTTTT
Sbjct: 121 ISPPPSPSKPRHSTVPTAVAPLSPLALPRSQVRREPEHSLRPRSPPEIEQKKILYQTTTT 180

Query: 181 EKPTKTD-YRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKK 240
           EKPTKTD YRQ D+YG SKPQQKQ HQQLQSDVINIKG+NVGAVMHITQSSDGSE++KKK
Sbjct: 181 EKPTKTDHYRQNDEYGASKPQQKQQHQQLQSDVINIKGENVGAVMHITQSSDGSEVIKKK 240

Query: 241 PSVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPK 300
           P+VGQSKENEEKTNKSNSN+PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA+ SK  K
Sbjct: 241 PTVGQSKENEEKTNKSNSNYPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFGSKKSK 300

Query: 301 HGDSIHESRH 309
           HGDSIH+SRH
Sbjct: 301 HGDSIHDSRH 308

[Close]

BLAST of IVF0024985 vs. NCBI nr
Match: XP_038904572.1 (pollen-specific leucine-rich repeat extensin-like protein 1 [Benincasa hispida])

HSP 1 Score: 407 bits (1047), Expect = 4.71e-140
Identity = 238/316 (75.32%), Postives = 259/316 (81.96%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTT-NTLQTSPVKQR 60
           MSNLPRFGRTWNRFSSLPRP +A R E QP  T ATEPEV     PTT N LQTSP+K+R
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPVSAPRPEIQP-LTTATEPEV-----PTTANVLQTSPIKER 60

Query: 61  TPRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPT 120
           +PR+ SPV KFPSPPSSPKY  AT TISPRKPLSP   YNR+DGERRTSATTSPK FKPT
Sbjct: 61  SPRIPSPVAKFPSPPSSPKYGVAT-TISPRKPLSPTPAYNRYDGERRTSATTSPKAFKPT 120

Query: 121 YISPPPSPPKPKHSTAATVV--APLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQT 180
            +SPP SPPKPKHST A +   APLSPLALPRSEVRREPE ++RPRSPPE+EQKK+LYQT
Sbjct: 121 PVSPPLSPPKPKHSTLAAIATAAPLSPLALPRSEVRREPEHTVRPRSPPEVEQKKVLYQT 180

Query: 181 TTTEKPTKTDYRQTDQYGTSKPQQKQHH----QQLQSDVINIKGDNVGAVMHITQSSDGS 240
           T  EK TKT++RQ + Y + KP QK  H    QQLQSDVINIKG+NVGAVMHITQSSDGS
Sbjct: 181 TM-EKTTKTEHRQPE-YISGKPNQKHQHNQQQQQLQSDVINIKGENVGAVMHITQSSDGS 240

Query: 241 EILKKKPSVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAY 300
           EI+KKKP+    KENEEK NKS  NFP K FMNSNFQGVNNSILYNSSLSHRDPGLHLAY
Sbjct: 241 EIVKKKPN----KENEEKANKSTPNFPAKQFMNSNFQGVNNSILYNSSLSHRDPGLHLAY 300

Query: 301 SSKNPKHGDSIHESRH 309
           S K P HGDS+H+SRH
Sbjct: 301 SKK-PNHGDSLHDSRH 302

[Close]

BLAST of IVF0024985 vs. NCBI nr
Match: XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 397 bits (1021), Expect = 4.54e-136
Identity = 219/309 (70.87%), Postives = 255/309 (82.52%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           M+NLPRFGRTWNRFSSLPRP+TA R +  P   A +EPEVF SA PT N LQTSP+K+R+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPP-AATSEPEVFSSAPPTANVLQTSPIKERS 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTY 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
            SPP SP K K+ST+ TV APLSPLALP  E R EPE  +RPRSPPE++QK +LYQ TT+
Sbjct: 121 TSPPRSPAKHKYSTS-TVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTS 180

Query: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
           EKP KTD+R ++ Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP
Sbjct: 181 EKPAKTDHRASE-YSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
           +V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA++ K P H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKK-PTH 300

Query: 301 GDSIHESRH 309
            DS+H+SRH
Sbjct: 301 ADSVHDSRH 304

[Close]

BLAST of IVF0024985 vs. NCBI nr
Match: KAG6597058.1 (hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396 bits (1017), Expect = 1.84e-135
Identity = 218/309 (70.55%), Postives = 254/309 (82.20%), Query Frame = 0


Query: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60
           M+NLPRFGRTWNRFSSLPRP TA R +  P   A +EPEV+PSA  T N LQTSP+K+R+
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPP-AATSEPEVYPSAPRTANVLQTSPIKERS 60

Query: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTY 120

Query: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTT 180
            SPP SP K K+ST+ TV APLSPLALP  E R EPE  +RPRSPPE++QK +LYQ TT+
Sbjct: 121 TSPPRSPAKHKYSTS-TVQAPLSPLALPSLEKRHEPEPMVRPRSPPEVQQKSVLYQKTTS 180

Query: 181 EKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKKKP 240
           EKP KTD+R ++ Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KKKP
Sbjct: 181 EKPAKTDHRASE-YSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKKKP 240

Query: 241 SVGQSKENEEKTNKSNSNFPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAYSSKNPKH 300
           +V  S ENE+ +NKS+SN PGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLA++ K P H
Sbjct: 241 TVSYSSENEKDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKK-PTH 300

Query: 301 GDSIHESRH 309
            DS+H+SRH
Sbjct: 301 ADSVHDSRH 304

[Close]

BLAST of IVF0024985 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 3.6e-12
Identity = 99/334 (29.64%), Postives = 139/334 (41.62%), Query Frame = 0


Query: 19  RPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRTPRLSSPVKKFPSPPSSPK 78
           +P T  RQ+  P  T+  +      + P+ +    +P K  TP    P   + SPPS  +
Sbjct: 72  QPLTPPRQKAPP--TSPPQERSPYHSPPSRHMSPPTPPKAATPPPPPPRSSYTSPPSPKE 131

Query: 79  YSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTYISPPPSPPKPKHSTAATV 138
              A   + PRKP SPPS  +      R++ + S KT  P+        P P+       
Sbjct: 132 VQEA---LPPRKPNSPPSPAH----SSRSTTSESVKTRSPSESENHRKAPSPR------- 191

Query: 139 VAPLSPLALPRSEVRREPERSIRPRSPPEIEQKKILYQTTTTEKPTKTDYRQTDQYGTS- 198
              LSP +LP S +    ER    ++    E+    ++T    +    DY Q   Y  + 
Sbjct: 192 --VLSPYSLPASLL--HSERETTQKNILTAEKTSQTHETNHHNQNHNHDYNQNHNYNQNH 251

Query: 199 ----------KPQQKQHHQQLQSD--------VINIKGDNVGAVMHITQSSDGSE----- 258
                        +K H Q   SD        VI I G+N GAVM I +S  G++     
Sbjct: 252 SYNQNQNHQGNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSG 311

Query: 259 ----------------ILKKKPSVGQSKENEEKT-----NKSNSNFPGKSFMNSNFQGVN 308
                           +     S     E ++KT     NK NSN P K+FMNSN Q +N
Sbjct: 312 THSSRVSHGTGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMIN 371

The following BLAST results are available for this feature:

BLAST of IVF0024985 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024985 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZ60	2.0e-164	100.00	Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. m...	[more]
A0A1S3AVJ6	2.0e-164	100.00	microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365...	[more]
A0A0A0L5T3	2.0e-140	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119290 PE=4 SV=1	[more]
A0A6J1IEX0	5.1e-107	70.87	DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1G1L2	1.9e-106	70.55	DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of IVF0024985 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437849.1	2.32e-211	100.00	PREDICTED: microtubule-associated protein RP/EB family member 1-like [Cucumis me...	[more]
XP_004133796.1	1.10e-179	87.10	extensin [Cucumis sativus] >KGN56394.1 hypothetical protein Csa_010862 [Cucumis ...	[more]
XP_038904572.1	4.71e-140	75.32	pollen-specific leucine-rich repeat extensin-like protein 1 [Benincasa hispida]	[more]
XP_022974814.1	4.54e-136	70.87	DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_...	[more]
KAG6597058.1	1.84e-135	70.55	hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0024985 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46630.1	3.6e-12	29.64	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..212
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 196..301
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 1..206
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 1..206
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 196..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024985.1	IVF0024985.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032774	RNA biosynthetic process
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity