IVF0024965 (gene) Melon (IVF77) v1

Overview


Name	IVF0024965
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	E3 ubiquitin-protein ligase ATL42-like
Location	chr02: 16471370 .. 16472142 (-)
RNA-Seq Expression	IVF0024965
Synteny	IVF0024965

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGGTTTAATAGAATCATTATGATCATTTTGATTATTTTTCTTTTTCCTGTCATTGCACAAGCACCTTCTCCACCAAAAGCTGGTTCTGTTATTCCACAAAACTTCACCATTGTTATTGGAATCCTCTCCATCATGTTCTCCATGGTTTTCATCCTTGTTGTTTATGCAAAATTCTGTCACCCGACTTCCCATTTTCGTGGCGAACCACAGGCTAATCTCAGGCATGGACTTCTCAGATCAGACTCAAGATTTTCTGGGGTTGATCAAAAGGTTATCGATGCACTTCCTTTCTTTAGATTCTCATCACTCAAAGGATCAAGGGAAGGGCTGGAATGTGCTGTTTGCTTATCCAAATTTGAGGACATTGAAGTCCTTCGGTTGCTTCCGAAATGCAAGCATGCCTTTCACATTGGCTGTATAGACCATTGGCTCGAAAAGCACTCGAGCTGTCCCATTTGTCGGTGTAGGATAAGTGTCGAGGACGTTGCATTCTTTAAATCTAACAGTATAAGACTAATCAGGAACAACAGCCAGCCAGACCTGCCACAAGATTCACATATGGAGCTCTTTGTGCTGAGAGAGGAAAATCATCATTACTCTTCAAGGTCCAACGACGGAACCAGCTTCAGGAAAATAGGAAAAGGTAGCAAGGAAAAGAAGTATTGATTGAAAGTGAAGCTGGTGAATACGAGAGTGACGAGCGAGTGCTCTTTCACAAGCATAAACACACGATTCTTGTATCTGACTTTGTTTTCATGAACAGATGA

mRNA sequence

ATGGGTAGGTTTAATAGAATCATTATGATCATTTTGATTATTTTTCTTTTTCCTGTCATTGCACAAGCACCTTCTCCACCAAAAGCTGGTTCTGTTATTCCACAAAACTTCACCATTGTTATTGGAATCCTCTCCATCATGTTCTCCATGGTTTTCATCCTTGTTGTTTATGCAAAATTCTGTCACCCGACTTCCCATTTTCGTGGCGAACCACAGGCTAATCTCAGGCATGGACTTCTCAGATCAGACTCAAGATTTTCTGGGGTTGATCAAAAGGTTATCGATGCACTTCCTTTCTTTAGATTCTCATCACTCAAAGGATCAAGGGAAGGGCTGGAATGTGCTGTTTGCTTATCCAAATTTGAGGACATTGAAGTCCTTCGGTTGCTTCCGAAATGCAAGCATGCCTTTCACATTGGCTGTATAGACCATTGGCTCGAAAAGCACTCGAGCTGTCCCATTTGTCGGTGTAGGATAAGTGTCGAGGACGTTGCATTCTTTAAATCTAACAGTATAAGACTAATCAGGAACAACAGCCAGCCAGACCTGCCACAAGATTCACATATGGAGCTCTTTGTGCTGAGAGAGGAAAATCATCATTACTCTTCAAGGTCCAACGACGGAACCAGCTTCAGGAAAATAGGAAAAGCTGGTGAATACGAGAGTGACGAGCGAGTGCTCTTTCACAAGCATAAACACACGATTCTTGTATCTGACTTTGTTTTCATGAACAGATGA

Coding sequence (CDS)

ATGGGTAGGTTTAATAGAATCATTATGATCATTTTGATTATTTTTCTTTTTCCTGTCATTGCACAAGCACCTTCTCCACCAAAAGCTGGTTCTGTTATTCCACAAAACTTCACCATTGTTATTGGAATCCTCTCCATCATGTTCTCCATGGTTTTCATCCTTGTTGTTTATGCAAAATTCTGTCACCCGACTTCCCATTTTCGTGGCGAACCACAGGCTAATCTCAGGCATGGACTTCTCAGATCAGACTCAAGATTTTCTGGGGTTGATCAAAAGGTTATCGATGCACTTCCTTTCTTTAGATTCTCATCACTCAAAGGATCAAGGGAAGGGCTGGAATGTGCTGTTTGCTTATCCAAATTTGAGGACATTGAAGTCCTTCGGTTGCTTCCGAAATGCAAGCATGCCTTTCACATTGGCTGTATAGACCATTGGCTCGAAAAGCACTCGAGCTGTCCCATTTGTCGGTGTAGGATAAGTGTCGAGGACGTTGCATTCTTTAAATCTAACAGTATAAGACTAATCAGGAACAACAGCCAGCCAGACCTGCCACAAGATTCACATATGGAGCTCTTTGTGCTGAGAGAGGAAAATCATCATTACTCTTCAAGGTCCAACGACGGAACCAGCTTCAGGAAAATAGGAAAAGCTGGTGAATACGAGAGTGACGAGCGAGTGCTCTTTCACAAGCATAAACACACGATTCTTGTATCTGACTTTGTTTTCATGAACAGATGA

Protein sequence

MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKFCHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQPDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGKAGEYESDERVLFHKHKHTILVSDFVFMNR

Homology

[Close]

BLAST of IVF0024965 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-54
Identity = 122/263 (46.39%), Postives = 167/263 (63.50%), Query Frame = 0


Query: 8   IMIILIIFLFPVIAQAPSPPK---AGSVIPQNFTIVIGILSIMFSMVFILVVYAKFCHPT 67
           I+   IIFL  V AQ+P PP       +   +  I+ G+ SI+F++ F+L+VYAK  H  
Sbjct: 9   ILFFFIIFLDYVSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFH-- 68

Query: 68  SHFRGEPQAN---LRH-----GLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAV 127
           +  R E  ++   +RH     GL    SRFSG+D+K I++LPFFRFS+LKG ++GLEC+V
Sbjct: 69  NDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSV 128

Query: 128 CLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVED---VAFFKSNSIR 187
           CLSKFED+E+LRLLPKC+HAFHIGCID WLE+H++CP+CR R+++ED   V    S S+R
Sbjct: 129 CLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLR 188

Query: 188 LIRNNSQPDLPQDSHMELFVLREENHHYSSRSNDG----TSFRKIGK-------AGEYES 246
           ++  N      +DS +E+++ REE       +NDG    +SFRKI K        G    
Sbjct: 189 IL--NQSETREEDSRLEIYIEREEG------TNDGSSRFSSFRKILKKSLLLEREGNENI 248

[Close]

BLAST of IVF0024965 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-52
Identity = 119/274 (43.43%), Postives = 164/274 (59.85%), Query Frame = 0


Query: 9   MIILIIFLFPVI-----AQAPSPPKAGSVIPQ---NFTIVIGILSIMFSMVFILVVYAKF 68
           M  +  F  P++     AQ P P + G ++     +  +V G+L+IMF++ F+L+VYAK 
Sbjct: 1   MYQIFFFFLPLLHSYASAQTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKC 60

Query: 69  CH----PTSHFRGEPQANLRHGLL-----RSDSRFSGVDQKVIDALPFFRFSSLKGSREG 128
           CH      S  R      LR G+       S  RFSG+D+  I++LP FRFS+LKGS++G
Sbjct: 61  CHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQG 120

Query: 129 LECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVED--VAFFKS 188
           L+C+VCLSKFE +E+LRLLPKC+HAFHIGCID WLE+H++CP+CR R+S+E+        
Sbjct: 121 LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNG 180

Query: 189 NSIRLIRNNSQPDLPQDSHMELFVLREENHHY--------SSRSNDGTSFRKIGKAGEYE 246
           NS R +   +Q ++ +DS +EL++ REE            SSR + G SFRKI K G  E
Sbjct: 181 NSFRFL---NQSEIREDSSLELYIEREEEEERIHREELSGSSRFSIGESFRKILKLGNKE 240

[Close]

BLAST of IVF0024965 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 9.1e-32
Identity = 71/156 (45.51%), Postives = 100/156 (64.10%), Query Frame = 0


Query: 24  PSPPK----AGSVIPQNFTIVIGILSIMFSMVFILVVYAKFC--HPTSHFRGEPQ--ANL 83
           PSPP       S++P    +VI +L+  FS+ F+L++Y K C     S +   PQ  A  
Sbjct: 42  PSPPPRHNFTSSLMP-GIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAIT 101

Query: 84  RH-------GLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLR 143
           R+       G +    + SG+D+ VI++LP FRF +L G ++GLECAVCL++FE  EVLR
Sbjct: 102 RYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLR 161

Query: 144 LLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDV 165
           LLPKCKHAFH+ C+D WL+ HS+CP+CR R+  ED+
Sbjct: 162 LLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDI 196

[Close]

BLAST of IVF0024965 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-22
Identity = 62/164 (37.80%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 7   IIMIILIIFLFPVIAQ--APSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKFCHPT 66
           II+ + II      AQ  +PSPP   +    + T V  +L  +F +  +L VY + C   
Sbjct: 14  IILHVAIIIQSKANAQSFSPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHC--- 73

Query: 67  SHFRGEPQANLRHGLLRSD---SRFSGVDQKVIDALPFFRFSSLKGSREG---LECAVCL 126
              R  P ++ R+   R++   SR  G+D  V+++ P F +SS+K S+ G   LECA+CL
Sbjct: 74  --ARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICL 133

Query: 127 SKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVE 163
           ++ ED E +RLLP C H FHI CID WL  H++CP+CR  ++ +
Sbjct: 134 NELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAK 172

[Close]

BLAST of IVF0024965 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-21
Identity = 50/128 (39.06%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 40  VIGILSIMFSMVFILVVYAKFCHPTSHFRGEPQANLRH---GLLRSDSRFS----GVDQK 99
           +IGIL+    +V    + +K+CH           NL H   G   S  R S    G+++ 
Sbjct: 61  LIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNES 120

Query: 100 VIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSC 159
           +I ++  +++ S  G  +G +C+VCLS+FE+ E LRLLPKC HAFH+ CID WL+ HS+C
Sbjct: 121 MIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNC 180

Query: 160 PICRCRIS 161
           P+CR  ++
Sbjct: 181 PLCRAFVT 188

[Close]

BLAST of IVF0024965 vs. ExPASy TrEMBL
Match: A0A5D3DZA7 (E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00780 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.0e-120
Identity = 216/219 (98.63%), Postives = 217/219 (99.09%), Query Frame = 0


Query: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60
           MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF
Sbjct: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60

Query: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120
           CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK
Sbjct: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120

Query: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180
           FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ
Sbjct: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180

Query: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGKAGE 220
           PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK  +
Sbjct: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGKGSK 219

[Close]

BLAST of IVF0024965 vs. ExPASy TrEMBL
Match: A0A1S3CHH4 (E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo OX=3656 GN=LOC103500996 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 9.2e-120
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60
           MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF
Sbjct: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60

Query: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120
           CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK
Sbjct: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120

Query: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180
           FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ
Sbjct: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180

Query: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK 217
           PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK
Sbjct: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK 216

[Close]

BLAST of IVF0024965 vs. ExPASy TrEMBL
Match: A0A6J1CUV0 (E3 ubiquitin-protein ligase ATL42-like OS=Momordica charantia OX=3673 GN=LOC111014428 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.3e-92
Identity = 185/253 (73.12%), Postives = 208/253 (82.21%), Query Frame = 0


Query: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60
           M +F+RII+II    L    AQ  SPPKA S IP+N T++IGI+SIM S+ FILV+YAKF
Sbjct: 1   MSKFSRIILIITATLLVHANAQV-SPPKADSGIPENLTMLIGIISIMLSLAFILVLYAKF 60

Query: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120
           CH  S  RG P+A+L  GLLRSD RFSGVDQKVID+LPFFRFSSLKGSREGLECAVCLSK
Sbjct: 61  CHRNS--RG-PRAHLGVGLLRSDLRFSGVDQKVIDSLPFFRFSSLKGSREGLECAVCLSK 120

Query: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFK-SNSIRLIRNNS 180
           FEDIEVLRLLPKCKHAFHIGC+DHWLE HSSCP+CRCRISVEDVAFF  SNS+RL+RNNS
Sbjct: 121 FEDIEVLRLLPKCKHAFHIGCVDHWLENHSSCPMCRCRISVEDVAFFTCSNSMRLMRNNS 180

Query: 181 QPDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK-------AGEYESDERVLFHKHK 240
           Q +LPQD +MELFV REE+HH SSR N G+SF KIGK       A E +S+E V+FHKHK
Sbjct: 181 QSELPQDPNMELFVQREEDHHNSSRFNIGSSFGKIGKGSKEKDGARERQSEEHVVFHKHK 240

Query: 241 HTILVSDFVFMNR 246
           H ILVSDFVFMNR
Sbjct: 241 HKILVSDFVFMNR 249

[Close]

BLAST of IVF0024965 vs. ExPASy TrEMBL
Match: A0A2N9GBZ7 (RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24653 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-65
Identity = 138/252 (54.76%), Postives = 176/252 (69.84%), Query Frame = 0


Query: 7   IIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKFCHPTSH 66
           +++ +L  F F V AQ       GS  P + T+VIGILS+MFS+  +L+VYAKFCH    
Sbjct: 6   LLIFVLHFFFFHVKAQYTGD---GSASPGSLTVVIGILSLMFSLTILLLVYAKFCHRRGP 65

Query: 67  FRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEV 126
              +PQ      L+RS SRFSG+D+ VI++LPFFRFSSLKGSR+GLECAVCLSKFED E+
Sbjct: 66  IHSDPQ---NFALIRSSSRFSGIDKTVIESLPFFRFSSLKGSRDGLECAVCLSKFEDTEI 125

Query: 127 LRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFK-SNSIRLIRNNSQPDLPQ 186
           LRLLPKCKHAFHI CID+WLEKH+SCP+CR ++S ED + F  +NS+RLI   +Q +L Q
Sbjct: 126 LRLLPKCKHAFHIECIDNWLEKHASCPLCRHKVSAEDPSIFTYTNSMRLI---NQSELRQ 185

Query: 187 DSHMELFVLREENHHYSSRSNDGTSFRKIGKAGEYES------------DERVLFHKHKH 246
           DS++ELFV REE+HH SSR + G SFRK  K  + E+            +  ++ HKH H
Sbjct: 186 DSNIELFVQREEDHHGSSRFSIGNSFRKTEKGDKEENPLIQEEADNSFDENHIVLHKHNH 245

[Close]

BLAST of IVF0024965 vs. ExPASy TrEMBL
Match: A0A2P5CMI2 (Zinc finger transcription factor OS=Parasponia andersonii OX=3476 GN=PanZnF31 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.6e-63
Identity = 145/274 (52.92%), Postives = 179/274 (65.33%), Query Frame = 0


Query: 5   NRIIMIIL--IIFLFPVIAQAPSPPKAGSVIPQNF----TIVIGILSIMFSMVFILVVYA 64
           NR+ +IIL  I+F F  +      P   S    NF     +VIGILS+MF + F L+ YA
Sbjct: 18  NRLSIIILHFILFFFDNVKAQNVSPDFPSTDETNFQPSLAVVIGILSVMFVITFFLLAYA 77

Query: 65  KFCHPTSHFRGEPQANLRH-----GLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLE 124
           KFCH     R E   NL H     GL+ S +RFSG+D+ VI++LPFFRFS+LKGS+EGLE
Sbjct: 78  KFCH-----RTESAENLNHHQNQTGLISSSNRFSGIDKSVIESLPFFRFSALKGSKEGLE 137

Query: 125 CAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFK-SNSI 184
           CAVCLSKFEDIEVLRLLPKCKHAFHI CID+WLEKHSSCP+CR R+S ED+     S+S+
Sbjct: 138 CAVCLSKFEDIEVLRLLPKCKHAFHINCIDYWLEKHSSCPLCRQRVSSEDLNLITYSSSM 197

Query: 185 RLIRN-----NSQPDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGKAGEYE------ 244
           R + N     N+Q +L QDS++ELFV REE+   SSR + G+SFRKI K  + +      
Sbjct: 198 RFLWNNHSCSNNQSELRQDSNIELFVQREESRRGSSRFSIGSSFRKIEKGTDDDHDHRKE 257

Query: 245 ----------SDERVLFHKHKHTILVSDFVFMNR 246
                      D+R +FHKH H I VSDFVF NR
Sbjct: 258 EEVLIQNHDGDDQRKVFHKHNHKIAVSDFVFKNR 286

[Close]

BLAST of IVF0024965 vs. NCBI nr
Match: XP_031738779.1 (putative RING-H2 finger protein ATL12 [Cucumis sativus] >KAE8652892.1 hypothetical protein Csa_022677 [Cucumis sativus])

HSP 1 Score: 442 bits (1136), Expect = 7.24e-153
Identity = 224/257 (87.16%), Postives = 233/257 (90.66%), Query Frame = 0


Query: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60
           MG+F+RIIMIIL IFLFPVIAQAPSPPKAGS IPQNFTIVIGILSIMFSMVFILVVYAKF
Sbjct: 1   MGKFSRIIMIILTIFLFPVIAQAPSPPKAGSGIPQNFTIVIGILSIMFSMVFILVVYAKF 60

Query: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120
           CHPTSHFRGEPQA+L HGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLS 
Sbjct: 61  CHPTSHFRGEPQAHLGHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSN 120

Query: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180
           FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRI VED+AFFKSNSIRLIRNNS+
Sbjct: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRIGVEDIAFFKSNSIRLIRNNSR 180

Query: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK------------AGEYESDERVLF 240
            +LPQDS +ELFV REENHH SSRSN+GTSFR IGK            AGE ES+ERVLF
Sbjct: 181 SELPQDSRIELFVQREENHHNSSRSNNGTSFRNIGKGNKEKEVLIENEAGECESEERVLF 240

Query: 241 HKHKHTILVSDFVFMNR 245
           HKHKH ILVSDFVFMNR
Sbjct: 241 HKHKHKILVSDFVFMNR 257

[Close]

BLAST of IVF0024965 vs. NCBI nr
Match: XP_008462696.1 (PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis melo])

HSP 1 Score: 436 bits (1121), Expect = 1.93e-151
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60
           MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF
Sbjct: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60

Query: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120
           CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK
Sbjct: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120

Query: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180
           FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ
Sbjct: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180

Query: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK 216
           PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK
Sbjct: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK 216

[Close]

BLAST of IVF0024965 vs. NCBI nr
Match: KAA0046520.1 (E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa] >TYK28739.1 E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa])

HSP 1 Score: 436 bits (1122), Expect = 2.13e-151
Identity = 216/219 (98.63%), Postives = 217/219 (99.09%), Query Frame = 0


Query: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60
           MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF
Sbjct: 1   MGRFNRIIMIILIIFLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKF 60

Query: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120
           CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK
Sbjct: 61  CHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSK 120

Query: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180
           FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ
Sbjct: 121 FEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQ 180

Query: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGKAGE 219
           PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK  +
Sbjct: 181 PDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGKGSK 219

[Close]

BLAST of IVF0024965 vs. NCBI nr
Match: XP_031742649.1 (E3 ubiquitin-protein ligase ATL42-like, partial [Cucumis sativus])

HSP 1 Score: 427 bits (1098), Expect = 2.86e-147
Identity = 214/243 (88.07%), Postives = 221/243 (90.95%), Query Frame = 0


Query: 15  FLFPVIAQAPSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKFCHPTSHFRGEPQAN 74
           F FPVIAQAPSPPKAGS IPQNFTIVIGILSIMFSMVFILVVYAKFCHPTSHFRGEPQA+
Sbjct: 3   FFFPVIAQAPSPPKAGSGIPQNFTIVIGILSIMFSMVFILVVYAKFCHPTSHFRGEPQAH 62

Query: 75  LRHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRLLPKCK 134
           L HGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRLLPKCK
Sbjct: 63  LGHGLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRLLPKCK 122

Query: 135 HAFHIGCIDHWLEKHSSCPICRCRISVEDVAFFKSNSIRLIRNNSQPDLPQDSHMELFVL 194
           HAFHIGCIDHWLEKHSSCPICRCRI VED+AFFKSNSIRLIRNNS+P+LPQDS +ELFV 
Sbjct: 123 HAFHIGCIDHWLEKHSSCPICRCRIGVEDIAFFKSNSIRLIRNNSRPELPQDSRIELFVQ 182

Query: 195 REENHHYSSRSNDGTSFRKIGK------------AGEYESDERVLFHKHKHTILVSDFVF 245
           REENHH SSRSN+GTSFR IGK            AGE ES+ERVLFHKHKH ILVSDFVF
Sbjct: 183 REENHHNSSRSNNGTSFRNIGKGNKEKEVLIENEAGECESEERVLFHKHKHKILVSDFVF 242

[Close]

BLAST of IVF0024965 vs. NCBI nr
Match: KAE8647036.1 (hypothetical protein Csa_023000 [Cucumis sativus])

HSP 1 Score: 372 bits (954), Expect = 6.81e-126
Identity = 184/211 (87.20%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 47  MFSMVFILVVYAKFCHPTSHFRGEPQANLRHGLLRSDSRFSGVDQKVIDALPFFRFSSLK 106
           MFSMVFILVVYAKFCHPTSHFRGEPQA+L HGLLRSDSRFSGVDQKVIDALPFFRFSSLK
Sbjct: 1   MFSMVFILVVYAKFCHPTSHFRGEPQAHLGHGLLRSDSRFSGVDQKVIDALPFFRFSSLK 60

Query: 107 GSREGLECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVEDVAF 166
           GSREGLECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRI VED+AF
Sbjct: 61  GSREGLECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRIGVEDIAF 120

Query: 167 FKSNSIRLIRNNSQPDLPQDSHMELFVLREENHHYSSRSNDGTSFRKIGK---------- 226
           FKSNSIRLIRNNS+P+LPQDS +ELFV REENHH SSRSN+GTSFR IGK          
Sbjct: 121 FKSNSIRLIRNNSRPELPQDSRIELFVQREENHHNSSRSNNGTSFRNIGKGNKEKEVLIE 180

Query: 227 --AGEYESDERVLFHKHKHTILVSDFVFMNR 245
             AGE ES+ERVLFHKHKH ILVSDFVFMNR
Sbjct: 181 NEAGECESEERVLFHKHKHKILVSDFVFMNR 211

[Close]

BLAST of IVF0024965 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 7.1e-56
Identity = 122/263 (46.39%), Postives = 167/263 (63.50%), Query Frame = 0


Query: 8   IMIILIIFLFPVIAQAPSPPK---AGSVIPQNFTIVIGILSIMFSMVFILVVYAKFCHPT 67
           I+   IIFL  V AQ+P PP       +   +  I+ G+ SI+F++ F+L+VYAK  H  
Sbjct: 9   ILFFFIIFLDYVSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFH-- 68

Query: 68  SHFRGEPQAN---LRH-----GLLRSDSRFSGVDQKVIDALPFFRFSSLKGSREGLECAV 127
           +  R E  ++   +RH     GL    SRFSG+D+K I++LPFFRFS+LKG ++GLEC+V
Sbjct: 69  NDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKKAIESLPFFRFSALKGLKQGLECSV 128

Query: 128 CLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVED---VAFFKSNSIR 187
           CLSKFED+E+LRLLPKC+HAFHIGCID WLE+H++CP+CR R+++ED   V    S S+R
Sbjct: 129 CLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSSTSLR 188

Query: 188 LIRNNSQPDLPQDSHMELFVLREENHHYSSRSNDG----TSFRKIGK-------AGEYES 246
           ++  N      +DS +E+++ REE       +NDG    +SFRKI K        G    
Sbjct: 189 IL--NQSETREEDSRLEIYIEREEG------TNDGSSRFSSFRKILKKSLLLEREGNENI 248

[Close]

BLAST of IVF0024965 vs. TAIR 10
Match: AT4G28890.1 (RING/U-box superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 8.7e-54
Identity = 119/274 (43.43%), Postives = 164/274 (59.85%), Query Frame = 0


Query: 9   MIILIIFLFPVI-----AQAPSPPKAGSVIPQ---NFTIVIGILSIMFSMVFILVVYAKF 68
           M  +  F  P++     AQ P P + G ++     +  +V G+L+IMF++ F+L+VYAK 
Sbjct: 1   MYQIFFFFLPLLHSYASAQTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKC 60

Query: 69  CH----PTSHFRGEPQANLRHGLL-----RSDSRFSGVDQKVIDALPFFRFSSLKGSREG 128
           CH      S  R      LR G+       S  RFSG+D+  I++LP FRFS+LKGS++G
Sbjct: 61  CHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQG 120

Query: 129 LECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVED--VAFFKS 188
           L+C+VCLSKFE +E+LRLLPKC+HAFHIGCID WLE+H++CP+CR R+S+E+        
Sbjct: 121 LDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNG 180

Query: 189 NSIRLIRNNSQPDLPQDSHMELFVLREENHHY--------SSRSNDGTSFRKIGKAGEYE 246
           NS R +   +Q ++ +DS +EL++ REE            SSR + G SFRKI K G  E
Sbjct: 181 NSFRFL---NQSEIREDSSLELYIEREEEEERIHREELSGSSRFSIGESFRKILKLGNKE 240

[Close]

BLAST of IVF0024965 vs. TAIR 10
Match: AT5G05810.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-31
Identity = 65/137 (47.45%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 39  IVIGILSIMFSMVFILVVYAKFC--HPTSHFRGEPQ--ANLRH-------GLLRSDSRFS 98
           +VI +L+  FS+ F+L++Y K C     S +   PQ  A  R+       G +    + S
Sbjct: 6   VVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNS 65

Query: 99  GVDQKVIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLE 158
           G+D+ VI++LP FRF +L G ++GLECAVCL++FE  EVLRLLPKCKHAFH+ C+D WL+
Sbjct: 66  GIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLD 125

Query: 159 KHSSCPICRCRISVEDV 165
            HS+CP+CR R+  ED+
Sbjct: 126 AHSTCPLCRYRVDPEDI 142

[Close]

BLAST of IVF0024965 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 9.3e-24
Identity = 62/164 (37.80%), Postives = 94/164 (57.32%), Query Frame = 0


Query: 7   IIMIILIIFLFPVIAQ--APSPPKAGSVIPQNFTIVIGILSIMFSMVFILVVYAKFCHPT 66
           II+ + II      AQ  +PSPP   +    + T V  +L  +F +  +L VY + C   
Sbjct: 14  IILHVAIIIQSKANAQSFSPSPPDLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHC--- 73

Query: 67  SHFRGEPQANLRHGLLRSD---SRFSGVDQKVIDALPFFRFSSLKGSREG---LECAVCL 126
              R  P ++ R+   R++   SR  G+D  V+++ P F +SS+K S+ G   LECA+CL
Sbjct: 74  --ARSNPDSSTRYFRNRANDGSSRRGGLDNAVVESFPVFAYSSVKESKIGSKDLECAICL 133

Query: 127 SKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSCPICRCRISVE 163
           ++ ED E +RLLP C H FHI CID WL  H++CP+CR  ++ +
Sbjct: 134 NELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAK 172

[Close]

BLAST of IVF0024965 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-22
Identity = 50/128 (39.06%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 40  VIGILSIMFSMVFILVVYAKFCHPTSHFRGEPQANLRH---GLLRSDSRFS----GVDQK 99
           +IGIL+    +V    + +K+CH           NL H   G   S  R S    G+++ 
Sbjct: 61  LIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNES 120

Query: 100 VIDALPFFRFSSLKGSREGLECAVCLSKFEDIEVLRLLPKCKHAFHIGCIDHWLEKHSSC 159
           +I ++  +++ S  G  +G +C+VCLS+FE+ E LRLLPKC HAFH+ CID WL+ HS+C
Sbjct: 121 MIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNC 180

Query: 160 PICRCRIS 161
           P+CR  ++
Sbjct: 181 PLCRAFVT 188

The following BLAST results are available for this feature:

BLAST of IVF0024965 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SL78	1.0e-54	46.39	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]
Q5XF85	1.2e-52	43.43	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
Q5EAE9	9.1e-32	45.51	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q8W571	1.3e-22	37.80	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q9LF64	2.5e-21	39.06	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]

BLAST of IVF0024965 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZA7	7.0e-120	98.63	E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CHH4	9.2e-120	100.00	E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo OX=3656 GN=LOC103500996 P...	[more]
A0A6J1CUV0	1.3e-92	73.12	E3 ubiquitin-protein ligase ATL42-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A2N9GBZ7	1.0e-65	54.76	RING-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2465...	[more]
A0A2P5CMI2	3.6e-63	52.92	Zinc finger transcription factor OS=Parasponia andersonii OX=3476 GN=PanZnF31 PE...	[more]

BLAST of IVF0024965 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738779.1	7.24e-153	87.16	putative RING-H2 finger protein ATL12 [Cucumis sativus] >KAE8652892.1 hypothetic...	[more]
XP_008462696.1	1.93e-151	100.00	PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis melo]	[more]
KAA0046520.1	2.13e-151	98.63	E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa] >TYK28739.1 E3...	[more]
XP_031742649.1	2.86e-147	88.07	E3 ubiquitin-protein ligase ATL42-like, partial [Cucumis sativus]	[more]
KAE8647036.1	6.81e-126	87.20	hypothetical protein Csa_023000 [Cucumis sativus]	[more]

BLAST of IVF0024965 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20030.1	7.1e-56	46.39	RING/U-box superfamily protein	[more]
AT4G28890.1	8.7e-54	43.43	RING/U-box superfamily protein	[more]
AT5G05810.1	1.2e-31	47.45	RING/U-box superfamily protein	[more]
AT4G40070.1	9.3e-24	37.80	RING/U-box superfamily protein	[more]
AT5G17600.1	1.8e-22	39.06	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..155 e-value: 5.8E-7 score: 39.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 113..156 e-value: 9.3E-13 score: 48.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 114..156 score: 12.474524
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 88..164 e-value: 5.3E-22 score: 78.8
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 32..245
None	No IPR available	PANTHER	PTHR46539:SF1	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 32..245
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 113..156 e-value: 3.66159E-19 score: 76.1865
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 94..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024965.2	IVF0024965.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane